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Heatmap: Cluster_228 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.61 1.4 -1.68 -1.79 -1.39 -1.34 -0.31 -0.81 -1.82 -2.32 -1.87 -1.52 0.56 0.92 0.81 0.39
2.06 2.1 -2.52 -2.44 -2.5 -1.87 -2.83 -1.75 0.66 0.12 -0.97 -2.02 -0.2 -0.55 -0.61 -0.57
1.92 1.61 -1.31 -2.4 -0.92 -0.87 -1.53 -2.21 0.05 -2.44 0.06 -0.25 -0.43 -0.61 0.6 -0.15
0.33 0.47 -2.7 -2.14 -1.97 -2.45 -0.98 -1.53 -4.65 -3.27 -2.31 -1.53 1.7 1.31 0.98 1.72
-0.55 -0.89 -5.05 -3.72 -3.99 -4.09 -4.58 -11.02 -7.81 -7.75 -7.71 -6.23 1.11 1.77 2.95 0.27
2.5 2.5 -6.5 -5.84 -1.19 -0.71 -0.74 0.29 -0.68 -0.79 -3.81 -4.33 -2.35 -2.45 -5.62 -3.55
1.36 1.63 -1.67 -3.09 -2.13 -2.08 -0.49 -0.59 -2.09 -2.2 -0.91 -1.1 0.53 0.33 0.75 1.16
2.17 2.06 -2.83 -3.38 -3.6 -2.74 -1.04 -2.0 -0.43 -1.95 -0.25 -0.83 0.29 -0.42 -0.37 -0.02
0.9 1.35 -1.89 -1.35 -0.88 -1.47 -0.21 -1.14 -0.11 -0.9 -1.7 -2.52 1.29 0.51 -0.0 0.92
2.36 2.87 -1.92 - - - -1.27 -3.58 0.66 0.3 - - - - - -
0.96 1.86 -0.96 -1.15 -0.7 0.12 -0.25 -1.28 0.13 0.15 -0.26 -0.46 -0.2 -0.48 -1.21 -0.5
0.94 1.01 -1.36 -1.67 -1.23 -1.09 -0.98 -0.52 -0.71 -0.16 -2.68 -1.35 0.92 0.76 0.65 1.04
3.17 2.77 - - -4.99 -2.78 - - - - - - - - - -
1.32 1.39 -1.21 -1.05 -0.99 -1.25 -0.17 -0.89 -1.34 -1.28 -0.26 -0.36 0.37 0.19 0.15 0.73
1.24 1.58 -1.01 -1.05 -0.91 -0.68 -0.2 -1.03 -0.3 -0.4 -0.5 -0.08 -0.32 -0.02 0.18 0.01
2.52 2.64 - - - - -2.34 -1.1 1.11 -0.37 - -1.25 - - - -
1.18 2.02 -1.69 -1.77 -1.12 -1.33 -0.86 -0.99 -0.31 -0.12 -1.32 -0.87 0.03 -0.25 -0.21 0.82
0.99 0.84 -0.68 -0.17 -0.56 -0.57 0.14 -0.33 -0.06 -0.16 -0.01 -0.16 -0.27 -0.28 -0.53 0.45
1.53 1.24 -1.22 -1.22 -0.79 -0.54 -0.23 -0.26 -0.29 0.04 -0.45 -0.33 -0.56 -0.07 -0.35 0.19
1.2 1.75 -0.99 -1.37 -0.59 -0.55 -0.8 -1.16 -0.17 -0.62 -0.11 -0.13 0.02 -0.18 -0.17 -0.14
0.94 1.8 -1.27 -0.32 -1.71 -0.63 -3.65 -2.01 0.45 -1.59 -1.22 -0.95 0.86 0.57 -0.09 0.3
-1.86 -0.89 - - - - - - -2.84 -4.1 - - 1.9 1.28 2.0 2.27
0.89 1.24 -1.72 -2.46 -1.75 -2.35 -0.04 -0.85 -0.74 -1.1 -1.13 -0.47 0.62 1.02 0.75 0.83
1.05 1.72 -1.13 -1.17 -0.41 -0.49 0.22 -0.47 0.01 -0.39 -0.37 0.06 -0.44 -0.39 -0.68 -0.6
2.22 2.5 -3.26 -3.27 -2.09 -2.32 0.06 -0.95 -0.44 -1.15 -0.25 -0.7 -2.7 -3.33 -3.65 -1.0
1.23 0.81 -1.6 -2.5 -1.57 -1.64 -0.35 -1.72 -3.12 -1.35 -1.73 -0.52 1.09 0.92 0.94 1.14
1.0 0.97 -0.78 -1.26 -0.63 -0.63 -0.16 -0.74 -0.85 -0.71 -1.03 -0.41 0.56 0.44 0.33 0.83
0.7 0.75 -1.16 -1.1 -0.96 -0.73 -0.6 -1.0 -0.55 -1.1 -1.02 -0.84 0.8 0.94 0.6 1.09
1.54 2.15 - -0.94 - - - -2.96 -0.67 0.38 - - - - 2.6 -
0.86 1.01 -1.35 -1.25 -0.68 -1.4 0.05 -0.93 -0.83 -1.27 -1.19 -1.11 0.67 0.94 0.46 1.03
1.24 1.49 - - -2.06 -2.8 -1.05 -3.35 -1.18 -1.54 -2.09 -1.39 0.31 0.63 1.92 0.92
1.11 1.68 -0.52 -0.65 -0.84 -1.31 -0.64 -1.53 -0.07 -1.04 -0.72 0.0 0.09 0.47 -0.88 0.41
2.0 2.27 - - - - - - 0.21 -2.2 -0.58 -0.95 0.84 -0.49 - 1.07
2.29 2.19 -0.87 -1.18 -0.46 -1.26 -3.35 -6.32 1.01 -0.6 -0.44 -1.13 - - -1.79 -2.89
1.35 1.72 -1.57 -1.79 -0.98 -1.2 0.52 -1.04 -1.31 -1.27 -0.63 -0.75 0.12 0.11 0.16 0.39
2.03 2.72 -4.85 -2.49 - -1.15 -2.98 -2.15 -0.64 0.4 -0.66 -1.07 - -3.06 0.01 -3.09
0.35 0.59 -2.72 -2.56 -2.07 -2.71 -0.38 -0.86 -1.84 -2.51 -2.65 -1.92 1.45 1.64 0.95 1.34
0.7 1.25 -1.83 -3.12 -2.14 -1.84 -1.09 -1.47 -0.59 -0.2 -2.0 -1.77 1.02 1.06 0.96 1.09
3.08 2.74 - -1.71 - - -2.3 -2.46 - - -2.97 - - - - -
3.03 2.71 - - - - - - - - - 0.36 - - - -
3.16 2.82 - - - - - - - - - - - - - -
1.04 1.63 -1.51 -1.87 -1.52 -0.81 -0.71 -1.62 -0.17 -0.09 -0.44 0.07 0.13 0.43 -0.05 0.4
0.48 1.54 -2.09 -2.6 -0.98 -0.33 -0.04 -0.95 -0.42 -0.18 -0.59 -0.26 0.57 0.42 0.02 0.61
1.95 1.77 -3.01 -2.65 -2.44 -1.87 -3.12 -5.08 0.61 0.24 -0.35 -1.65 -0.38 0.36 0.12 -0.18
1.58 2.14 -2.25 -1.18 - -0.41 -1.33 -3.32 0.65 -3.19 -3.16 -3.26 -1.92 0.98 1.05 -1.04
1.87 1.92 -2.75 -3.0 -4.22 - 0.38 -0.59 -0.57 -1.36 -0.83 -2.75 0.15 0.28 -1.46 0.87
1.3 1.54 -1.78 -2.1 -1.16 -0.65 -0.02 -0.87 -0.74 -0.91 -1.27 -0.7 0.43 0.46 0.52 0.22
1.06 1.14 -0.95 -1.3 -1.19 -0.8 -0.04 -0.97 -0.74 -1.01 -0.88 -0.75 0.48 0.47 0.68 0.75
1.08 1.4 -1.69 -1.92 -1.19 -1.17 -0.93 -1.08 -0.38 -0.63 -0.24 -0.63 0.6 0.49 0.15 0.89
1.57 1.39 -1.75 -1.45 -1.52 -1.79 -0.41 -0.88 -0.24 -0.36 -0.58 -0.58 0.23 0.26 -0.04 0.61
0.79 1.27 -1.31 -0.71 -0.7 -0.47 -0.81 -1.19 0.24 -0.12 -0.2 -0.1 0.48 0.02 -1.01 0.75
2.11 1.99 -1.38 -1.7 -2.7 -0.29 0.05 -2.53 0.63 -0.89 -0.48 -0.96 -0.6 - - -0.24
0.75 0.93 -1.47 -2.34 -1.51 -1.07 -0.36 -1.25 -0.93 -0.96 -0.77 -0.93 0.8 1.15 1.01 0.77
1.96 1.93 -2.42 -1.95 -1.68 -1.7 1.16 -0.1 -0.67 -1.48 -0.16 -1.53 -0.74 -1.01 -2.01 -1.05
2.02 2.83 - - - - - -2.48 1.08 0.14 -1.41 0.07 - - - -
2.69 2.72 - - - - - -3.22 -0.51 -1.45 -1.41 0.48 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.