Heatmap: Cluster_16 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.33 - -0.23 -1.05 0.46 -1.34 -0.97 3.05 - - -2.89 -4.0 0.82 -0.27 -1.66 -0.06
- - - - - - 2.22 3.51 - - - - - - - -
- - - -0.51 - - 0.02 3.37 - - - - - - 1.99 -
-0.35 -1.35 -3.94 -2.61 -0.9 -1.8 0.17 3.33 -2.36 -1.3 -2.27 -3.38 -1.44 -0.66 - -0.57
- - -1.53 -1.19 -0.42 - 2.49 2.86 - - - - - -1.73 0.34 -
- - - - - -3.29 -1.93 -0.72 - - - - 2.35 1.87 1.21 1.98
- - -3.55 -2.16 -3.13 -2.71 0.89 1.32 -4.43 -5.9 - - 2.28 1.21 0.19 1.43
-1.95 - - - - -3.47 -1.31 1.05 - - - - 1.64 1.76 - 2.74
-4.44 - -2.48 -3.73 -1.43 - 1.37 2.4 - - -1.98 0.72 0.66 1.06 -0.43 0.23
- -3.95 -3.44 - -0.72 -1.89 0.88 3.63 - - - - -3.11 -4.2 -2.13 -1.64
-2.3 -3.05 -6.87 -8.35 -6.45 -4.96 -2.1 -0.16 -5.59 -6.15 -3.77 -3.78 1.83 2.53 0.9 1.65
-3.44 -6.28 -3.36 -2.86 -2.3 -3.89 0.56 2.6 -2.47 -2.23 -3.07 -1.55 1.34 1.3 -3.45 0.94
- - - - - - -2.31 -0.77 - - - - 2.27 2.7 - 1.96
-1.35 -2.51 -1.68 -1.43 -1.69 -0.97 0.6 2.67 0.84 -0.04 -1.05 -1.77 -0.15 -0.89 -1.56 -0.44
- - - - - - -1.17 -0.15 - - - - 2.09 1.72 1.68 1.97
-2.94 -4.03 - -4.76 -3.79 -6.12 -0.17 0.9 -6.5 -5.77 -2.16 -3.71 1.93 1.56 0.8 2.03
-4.91 0.62 -5.32 -4.66 -2.87 -4.02 0.76 3.41 -5.98 -3.3 -0.64 0.06 -7.0 - - -7.12
-2.63 -4.0 -1.22 -0.07 0.84 0.05 0.33 3.17 -6.69 -1.84 -2.3 -0.62 -5.61 -4.94 -5.64 -3.19
-6.02 -5.6 -3.98 -1.2 -1.29 -1.85 0.54 3.55 -5.62 -1.29 -1.71 -0.27 - -6.99 - -5.85
- - -2.72 - - - - 3.39 - - -0.05 1.74 -0.48 -1.44 - -
- - - - - - 0.79 1.41 - - - - 1.44 1.63 1.8 1.23
-1.79 -3.25 -1.31 -0.82 -1.55 -2.08 0.37 2.66 -1.51 -1.61 1.04 0.78 -0.66 -1.82 -1.27 -0.61
-2.21 -1.96 -1.41 -2.4 - - -2.82 3.17 1.01 -2.1 -2.06 1.15 - - 0.16 -
-0.0 -4.25 -3.03 -3.39 -2.42 -1.32 -0.46 1.93 -4.7 -6.34 -2.64 -0.84 1.35 0.8 0.47 1.67
-0.55 -6.21 -0.72 -1.31 -1.53 -2.87 -3.41 2.85 - - -4.39 0.05 0.69 0.34 -1.17 1.07
-3.23 - - -6.94 -8.13 -8.3 -3.32 -1.03 - - - -7.71 2.22 2.79 -1.47 1.74
-0.94 -1.09 -1.6 -1.64 -1.02 -0.47 0.3 2.1 0.48 -0.44 -0.94 -1.56 0.44 0.31 -0.05 0.09
-3.73 -3.91 -2.9 - -3.78 -2.93 -2.25 0.68 - - - -3.33 1.81 2.08 1.68 1.41
-1.19 -1.92 -0.2 -2.16 -1.71 -2.47 2.32 2.49 -2.18 -2.27 -2.44 -2.96 -0.48 -0.59 -1.14 -0.89
- - - - - - -0.26 1.38 - - - - - 1.27 3.34 -
-3.66 - - -3.49 -3.7 - - 3.63 - - -1.15 1.56 - - - -
-3.62 - - - 0.12 -1.27 -3.49 3.48 - - - - - - 1.66 -
-0.51 - - - - - - 3.44 - - - - - - 2.15 -
- - - - - - 0.64 3.85 - - - - - - - -
- - - - - - 0.51 3.18 1.67 0.91 - -1.14 - - - -
- - - - - - -0.23 3.92 - - - - - - - -
- - - - - - -0.34 0.9 - - - - - - 3.74 -
-4.29 - -5.27 - -5.17 -2.27 1.07 1.58 -3.64 -4.59 -2.95 -2.65 2.01 0.48 1.18 1.31
-6.18 - -5.36 - - - -3.45 -0.89 -3.78 -3.72 -4.68 - 3.14 1.58 - 1.75
-2.48 -2.49 -2.71 -2.97 - -0.17 0.76 3.28 -3.73 -3.67 -3.64 -2.16 0.62 -0.89 -1.41 -2.51
- - - - - - 0.04 0.47 - - - - - 2.64 - 2.88
-4.46 -3.89 -2.54 -0.83 -1.5 -1.1 1.09 3.07 0.63 0.56 -1.57 -1.62 -5.03 -4.75 -4.38 -5.89
- - - - - - -1.43 0.32 - - - - 1.74 2.06 1.58 1.95
-0.02 -0.22 -0.96 -3.7 -1.03 -0.89 0.47 3.0 - -4.37 -2.0 1.06 -2.15 -2.24 - -1.69
-4.98 -6.73 -4.6 -2.15 -4.05 -1.76 0.1 0.92 -5.61 -4.55 -3.93 -2.03 2.14 1.51 1.03 1.44
-2.59 -2.18 -1.38 -0.74 -1.15 -1.17 0.54 2.67 1.29 0.42 -1.05 -1.7 -0.42 -1.66 -3.2 -2.61
-3.66 -7.17 -4.52 -5.65 -4.45 -3.59 -2.51 -0.33 - - - -5.62 2.19 2.51 1.08 1.23
-1.65 -0.73 -3.13 -4.79 -0.76 -1.16 -0.89 2.47 -1.73 -2.48 - -1.97 0.76 1.58 0.75 -0.54
1.27 - - - - - 0.5 3.6 - - - - - - - -
-3.91 - - - - - -3.18 -1.2 - - - - 1.28 1.73 0.8 2.98
-0.03 - -1.19 -0.6 -0.71 -3.55 -1.52 3.45 - -2.89 -1.12 0.41 - - - -
- - - - - - -0.04 2.89 - -0.75 -0.72 - - -0.53 2.52 -
-3.8 -5.66 -3.25 -4.79 -3.57 -3.42 -0.39 0.46 - - -5.04 -3.82 1.21 1.4 2.75 0.73
- - - - - - -3.01 -0.05 - - - -3.36 1.69 2.29 0.55 2.39
-1.51 -4.85 -0.5 -2.39 1.0 -1.17 -0.02 3.3 - -0.35 -3.64 -2.16 - -2.49 - -2.52
- - - - - - -2.96 -2.54 - - - - 2.57 2.1 0.5 2.02
-0.18 -1.3 -2.71 -2.88 -2.14 -2.33 1.4 2.53 - - -6.78 - 0.37 0.6 -0.06 0.85
-3.42 -2.76 -0.31 -1.03 -0.28 0.05 0.3 2.84 - - -3.38 -0.51 -2.28 -1.38 1.29 -1.39
-5.27 - -0.8 -4.04 -2.68 -3.41 -0.15 2.18 - - -3.68 -2.79 0.69 1.71 0.5 1.65
-6.35 - -2.97 - -4.84 -5.0 -0.87 -0.49 - - -5.88 -3.99 2.01 3.05 0.14 0.04
-3.97 -2.14 -0.85 -1.61 -1.45 -0.7 1.7 2.87 - - -4.09 -1.61 -2.84 -0.24 0.45 -0.97
-3.09 -1.65 -2.94 -1.18 -2.49 -0.89 -0.44 3.07 0.33 0.15 -1.95 -2.47 -0.86 -2.21 -4.05 0.61
-0.51 -1.96 -3.13 -3.09 -2.14 -3.22 0.99 2.77 -2.56 -2.61 -0.52 -0.01 0.42 0.35 -1.82 -0.48
-1.26 0.54 -4.61 -5.41 -1.79 -2.95 1.18 3.37 -6.5 -4.04 -4.15 -1.08 -2.4 -3.44 - -2.37
- - - - - - -4.87 -3.4 - - - - 1.71 3.14 1.69 -0.83
-0.02 -0.62 -0.58 -0.21 -0.79 -0.72 1.16 2.27 0.53 0.31 -0.23 -0.89 -2.95 -3.47 -3.02 -2.5
-0.4 -1.11 -3.52 -2.19 -3.39 -1.69 -0.29 1.53 -1.73 -0.9 -0.28 -1.74 1.27 1.38 0.1 1.21
- - - - - - -4.28 -2.58 - - -4.8 -4.94 2.69 0.9 2.04 1.73
-1.89 -2.71 -1.55 -1.11 -1.5 -2.22 0.97 2.44 0.01 0.34 -1.12 -1.1 -0.19 -0.86 -0.72 0.67
-4.7 -7.03 - - - -6.54 -5.18 -1.21 - -5.29 -3.84 -4.14 0.99 1.58 2.6 2.09
-0.63 - - - - -0.46 0.49 3.01 - - - 0.14 - - 1.47 0.37
- - - - - - 2.58 3.32 - - - - - - - -
- - -4.86 - - - -0.64 0.01 - - - - 2.88 0.95 -1.49 2.22
-3.87 - -5.81 -4.89 -3.87 -4.04 -1.5 -0.66 - - -6.15 -3.93 2.16 0.93 -0.92 2.96
- -1.82 -1.44 - - - -2.11 3.33 - - - 1.42 - -1.63 1.03 -
- - -8.9 - - - 0.09 3.9 - - - - -6.99 -7.08 -6.01 -
-4.36 - 0.28 -1.44 -1.44 -1.62 0.11 3.52 -1.69 - -1.92 -2.02 - - - -1.68
-3.95 -1.6 -1.76 -1.57 0.91 -1.97 -0.23 2.27 -3.26 -1.0 -3.68 -2.13 1.08 -0.17 -2.68 1.62
-7.7 - - - -2.52 -2.14 0.59 1.03 - - - - 1.95 1.51 0.77 1.86
-2.07 -6.85 -4.76 -5.25 -2.78 -3.79 0.18 1.36 -7.12 -7.65 -2.59 -1.55 1.63 1.79 1.07 1.37
- - - - - - -0.27 1.44 - - - - 1.92 1.62 1.94 0.84
-4.51 -3.78 -3.19 -3.74 -4.11 -6.27 0.36 3.5 -0.18 0.58 -3.57 -2.36 -4.33 -1.9 - -3.86
-6.09 -0.46 - - -2.14 -1.84 0.06 2.0 - - -4.59 -3.69 1.64 0.98 0.43 1.65
-2.19 - - - 0.62 0.81 -1.05 3.47 - - -2.29 - -1.05 -2.15 - -
- - -1.45 - 0.55 -0.75 -1.38 3.28 - - - - -1.12 -1.22 -0.15 0.75
- -3.99 0.14 -1.1 0.46 -0.92 0.73 3.32 - - -2.61 -0.61 - - - -
- - - -2.03 - -1.66 2.11 2.91 -3.37 -1.31 0.43 0.79 - - - -
-4.16 -5.71 -0.48 -0.86 0.3 0.32 -0.98 3.32 -2.82 -2.17 -1.63 -0.11 - -6.37 -4.3 -
-1.82 -3.6 -1.72 -1.71 -0.12 0.26 -0.28 3.05 -7.73 -4.86 -1.8 -1.27 -0.14 0.4 -1.83 -0.76
-3.66 - -1.57 -0.24 -0.76 -1.93 -1.1 3.41 - - -1.64 1.25 - -3.07 - -
- -3.33 - - - -2.89 -0.62 3.79 - - - - -1.35 - -1.96 -0.74
-6.61 - -5.38 - - - 1.85 2.0 - - - - 1.48 0.37 0.6 1.46
- -8.11 -3.02 -3.48 -7.3 -5.11 -1.24 0.47 -2.89 -4.42 -4.11 -4.22 1.49 1.76 1.53 2.19
- - - - - - -0.22 3.92 - - - - - - - -
- - -4.55 -1.63 0.17 -2.78 -2.63 3.63 -1.39 -0.67 -1.42 -1.18 - - - -
- - - - - - 0.57 3.37 - - - - - 2.06 - -
-1.9 -0.5 - -2.73 0.76 -2.1 -1.15 3.34 -1.48 -2.42 - -0.49 - -2.06 -0.18 -
-3.75 - -3.18 -2.84 -3.38 -1.29 -0.22 1.13 - - -3.82 -2.34 1.5 -0.99 - 3.09
-0.72 - - - - - - 3.79 - - - 0.6 - - - -
- - - - - - -4.76 -2.34 - - - - 2.33 1.61 0.22 2.71
-2.23 -2.97 -3.03 -1.83 -1.58 -1.65 -0.4 1.48 - -3.99 -3.95 -3.06 1.47 -0.15 -1.73 2.78
-2.27 -2.76 -4.14 -4.78 -4.31 -4.17 -0.49 0.5 -4.06 -5.07 -2.44 -1.43 1.6 2.08 1.31 1.55
-9.79 -5.09 - -6.05 - -7.42 -2.32 3.65 -4.39 -4.16 0.1 0.98 - - - -
-7.24 -6.24 -6.29 -5.7 -5.02 -7.07 -1.86 -0.12 -5.24 -6.22 -6.95 -6.47 1.67 2.21 0.55 2.43
-5.53 -5.28 -6.08 -6.55 -6.76 -6.6 -0.46 0.67 -5.72 -5.93 -3.13 -4.74 2.07 1.46 0.11 2.43
- - -1.87 - - - -1.7 1.24 - - - - 1.46 1.09 1.01 2.62
- - - - - - -1.76 -1.38 -5.54 - - - 2.51 1.86 1.11 1.94
-2.02 -0.83 -0.95 0.41 - - -0.66 3.01 - - - - - -0.16 1.91 -
-1.42 -2.35 -0.92 -3.39 -1.61 -3.76 -0.79 3.42 - - -0.46 1.24 - - - -
- - -2.52 - - - 2.53 3.33 - - - - - - - -
- - - - -0.53 -0.69 - 2.74 - - - -0.09 1.25 - 2.22 -
-4.69 -8.02 -3.24 -2.59 -2.2 -2.43 -0.23 3.23 -4.14 -4.08 1.09 1.2 -2.97 -2.67 -3.0 -3.35
-4.41 -2.59 -0.77 -3.24 -1.87 - 0.27 3.72 -2.99 -2.93 -2.9 - - - - -
- - -3.07 -3.74 -1.62 - 0.84 1.83 - - -1.81 -0.18 1.3 1.07 0.4 1.62
- -2.69 -3.09 - -1.97 -1.13 -2.18 3.29 -0.51 - -0.09 1.57 - - - -1.31
- -1.02 - - - - 2.05 2.25 - - - - 0.73 0.86 0.12 1.02
- - -0.69 -0.36 -2.14 -2.31 -0.53 3.45 - - 0.13 0.51 - - - -
- -3.61 - -1.76 -2.96 -0.13 -3.76 3.53 - - -1.43 -0.54 - -0.69 -0.2 -1.3
-2.53 -2.35 - - - - - 2.44 - - - -0.13 2.04 0.3 1.15 0.78
- - - - - - 2.13 3.54 - - - - - - - -
0.21 -7.44 -3.46 -5.75 -2.18 -3.4 -0.61 2.56 -6.82 -3.18 -2.82 0.72 0.61 0.2 -1.36 1.52
- -0.42 - - - - 0.15 2.65 0.98 -0.55 - - 0.73 -1.37 0.7 0.61
- - - -6.52 - -6.9 -4.5 -1.62 - - - -4.29 2.79 1.13 -2.41 2.64
- - -1.07 - -0.95 - -0.75 2.91 - - - - 0.83 - 1.81 0.71
-3.14 - - - -3.26 - -1.06 0.46 - - - - 2.85 1.24 0.5 1.57
-2.81 -4.9 -0.37 0.06 -0.57 -0.06 1.0 3.3 -2.69 -3.63 -3.6 -2.12 - - - -
- - - 1.08 - - - 3.8 - - - - - - - -
-5.48 - -2.82 -3.95 -2.15 -3.15 -6.95 0.88 -4.71 -3.33 -4.03 -3.4 1.94 0.32 -1.81 2.99
-3.4 - -0.63 -0.72 - - 0.87 3.24 - -2.01 - -0.49 0.87 -0.81 - -
- - -4.27 - - - -2.35 -0.17 - - - - 0.97 1.95 1.79 2.48
- - -4.67 - - - -4.36 3.69 -4.04 -1.41 -0.77 0.99 - - - -
-2.61 -4.62 -4.27 -6.15 - - 1.05 1.84 - - - - 1.63 0.81 0.13 2.05
-2.15 -1.82 -5.96 - -4.65 -2.71 1.17 2.22 -3.8 -3.5 -3.15 -3.97 1.7 0.71 -0.7 1.33
- - - - - - -1.14 -0.94 - - - - 2.55 1.28 0.83 2.31
0.41 -0.69 -2.66 -2.21 -6.11 -3.69 0.81 2.36 -1.21 -2.02 -1.4 -1.87 0.95 -0.18 -1.03 1.04
-0.83 -2.23 -4.81 -3.73 -4.21 -3.75 -0.97 1.02 -3.87 -3.03 -1.57 -1.64 1.5 1.97 -1.04 2.13
-4.89 -4.06 -1.08 -1.58 -1.14 -2.79 -3.75 3.48 - - -0.6 1.39 - - - -
-3.39 -7.31 -2.08 -3.12 -1.89 -1.01 1.36 2.57 0.61 -0.83 -0.36 -0.17 -0.05 -1.15 -1.89 -0.23
-3.46 -5.5 -6.48 - -3.34 -3.08 -1.71 0.47 -3.39 -5.23 -1.93 -2.47 2.24 1.61 0.91 1.91
-4.68 -3.86 - - - - -0.55 1.1 - - - - 2.08 1.35 1.71 1.6
-3.33 0.03 -1.22 - -0.55 - 1.23 3.51 - - - - - - - -
-0.4 -1.29 -0.16 0.11 -0.82 -0.33 0.85 2.73 -5.67 -6.02 -1.49 -0.56 -0.82 -1.6 -1.53 -0.46
-4.13 - -2.78 -2.3 -4.23 -2.99 -1.87 0.36 -3.81 -5.33 - -5.4 0.14 1.8 3.13 -1.35
-6.1 -1.78 -0.75 -3.58 -1.87 -0.81 2.27 2.76 -5.64 -3.0 -3.55 -0.53 -0.63 -1.85 -2.36 -0.87
-3.6 -1.77 -1.89 -2.32 -2.38 -2.31 -2.84 3.57 -3.4 -1.76 -0.85 0.11 -3.06 - -2.09 -1.38
-6.04 -2.45 -1.68 -2.45 -0.79 -3.01 1.86 3.0 -5.06 -5.33 -0.84 1.2 -7.7 -5.47 -6.72 -7.82
-5.9 -4.06 -5.13 -3.47 -2.14 -0.23 1.16 3.54 - -5.5 -2.66 -1.87 -4.21 -3.72 -3.23 -2.33
-6.13 -4.89 -4.32 - -5.19 -2.35 0.01 3.72 - - -1.47 -0.58 -3.41 -1.33 - -
-2.45 - - -1.31 -1.51 - -2.31 3.89 - - - - - - - -
-0.4 - -2.72 - -3.53 -3.23 0.88 3.22 -6.18 -3.54 - -4.61 -0.59 -1.2 0.58 0.0
-1.12 - -5.9 -4.97 -4.45 -4.12 -1.67 1.28 -3.98 - - -3.31 0.56 2.22 1.71 1.63
-0.4 - -2.34 - - - 1.31 3.02 - - - - - 1.93 - -0.56
- - - - - - -3.28 -2.21 - - - - 1.93 1.55 0.16 2.97
-5.2 -3.36 -0.85 -1.2 -1.45 -1.43 1.28 2.8 -0.64 -0.76 -2.43 -1.65 -0.22 -1.74 -4.53 0.85
-4.15 -2.19 -2.09 -2.55 -2.39 -1.78 0.83 2.3 -6.66 - - - 1.01 0.82 0.52 1.53
- -7.51 - - - - 1.04 1.25 -5.73 -7.26 -4.64 -5.74 2.1 0.65 0.56 2.05
- - - - - - - 3.22 -1.24 - 1.35 1.41 - -1.58 -0.51 -
- - - - - - -1.53 -0.73 - - - - 2.63 1.54 2.02 0.92
- - - - - - 1.51 2.65 - - - - 0.87 0.77 - 1.75
-2.87 - -0.11 - - - 1.39 2.94 0.03 - - 0.02 1.39 - - -
-1.5 -1.62 -1.39 -0.83 -1.1 -1.69 0.12 2.96 0.49 0.2 -1.21 -1.53 -1.27 -1.86 -2.87 -0.77
-1.96 -6.79 -2.68 -3.93 -2.81 -2.21 -1.98 1.86 - -5.64 -3.02 -0.71 1.72 1.18 1.08 1.5
-1.13 -0.8 -2.03 -2.36 -0.95 -0.82 -0.35 2.91 -1.11 -1.66 -0.77 -0.46 -0.4 0.0 -1.04 -0.31
- - -0.83 -1.18 -0.09 -0.21 0.09 2.72 1.09 1.1 -2.42 -1.24 -1.55 -5.45 -4.96 -1.97

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.