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Heatmap: Cluster_71 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.93 - - - 2.42 - 1.3 -3.08 - 2.68 0.46 - - - - -
-1.14 0.15 -2.75 -3.61 1.72 -0.34 -3.03 1.14 1.02 1.95 -0.28 -1.02 -4.84 -2.13 -1.86 -4.96
0.4 -0.55 -0.47 -1.79 0.16 -0.27 -1.34 1.02 0.79 0.89 -2.19 -2.0 0.25 0.04 0.25 0.23
-0.82 -0.74 0.27 -0.39 1.13 0.74 -3.58 0.44 1.16 1.64 -1.89 -1.51 -3.0 -0.92 -1.02 -1.12
- - -1.28 -0.36 2.42 -2.09 - -1.19 0.18 2.87 -2.6 -2.71 - - - -
-4.88 - - - -2.9 - - - - -1.78 - - 2.89 2.04 - 2.01
-2.45 -6.88 -4.3 -4.97 -2.09 -1.23 -6.97 -3.12 -3.55 -0.75 -3.63 -3.03 1.76 2.66 1.08 1.16
-8.55 -5.73 0.19 -0.2 1.11 0.33 -3.94 0.28 0.42 1.99 1.08 0.86 - -5.91 - -
-1.15 - - - - -0.34 - -1.1 - 0.76 - - 2.02 1.51 0.99 1.89
- -1.11 0.24 -0.35 2.13 -0.78 -1.3 1.37 1.27 1.07 -0.93 -1.04 - -4.48 - -4.54
-4.2 -1.38 -2.35 -4.01 -1.9 -1.38 -5.02 -4.21 -0.59 0.0 - - 2.6 -0.08 1.12 1.89
-2.91 -3.8 -1.79 -1.68 0.9 -0.27 -6.26 2.17 0.3 2.56 -1.02 -1.58 - -4.77 - -
-0.62 - 0.15 -0.88 1.23 -0.97 0.79 -2.89 -1.81 1.45 -3.36 -1.25 1.23 0.67 -2.13 0.35
- - - - - 0.61 - -2.59 1.95 2.27 - - 0.98 0.88 - 0.85
-2.28 0.11 -1.14 -0.71 0.17 -1.04 0.14 0.02 -0.25 -0.43 -0.98 -1.34 1.26 0.61 0.46 1.09
-0.89 -1.53 -0.35 -0.12 0.28 0.27 0.12 -0.19 1.11 1.14 0.66 0.28 -0.73 -1.15 -2.09 -0.74
-0.55 -1.29 0.27 0.0 0.29 0.47 -0.9 -0.14 0.38 1.17 0.18 0.02 -0.5 -0.68 -0.29 -0.34
-1.58 -1.87 -1.79 -1.65 -0.87 -0.2 -0.4 0.3 -1.03 1.08 0.12 0.23 0.37 1.05 -0.15 1.17
0.04 -0.58 -0.45 -0.55 0.3 0.44 0.14 0.41 0.14 0.58 -0.21 -0.1 -0.15 -0.4 -0.25 -0.04
-0.7 -1.02 -0.32 0.12 0.3 -0.0 -0.12 0.02 0.91 1.08 0.07 0.21 -0.42 -0.49 -0.9 -0.65
-2.02 - -0.36 -1.58 -0.85 - - - - -0.27 - - 0.94 -1.14 2.5 2.39
-4.92 -0.06 -0.11 0.57 0.68 0.19 -2.17 -0.46 1.35 2.16 -3.82 -1.19 -1.37 -1.57 - -0.6
-4.46 -4.29 -0.92 -0.32 0.2 0.51 -0.13 -2.73 0.7 1.38 -0.74 -0.79 -2.42 -2.79 2.18 -0.58
-2.48 -3.68 -0.63 -0.92 0.82 0.33 -0.32 0.73 0.98 2.12 -1.59 -0.6 -0.54 -1.88 -3.27 -0.46
-7.29 - -1.77 -0.98 -0.26 -1.47 -1.44 -2.37 -0.44 1.47 -1.54 -2.8 1.71 0.6 -0.63 2.0
- - -2.14 -2.13 0.92 0.63 -0.68 1.08 -3.9 1.49 -1.22 -1.32 1.15 0.26 0.01 0.33
-1.16 -5.0 1.26 -0.44 0.47 -0.42 -5.14 - -0.2 2.39 -1.81 -3.91 0.03 -1.65 0.42 0.13
-2.58 -0.75 -0.21 -1.46 -1.66 -1.83 -0.88 -2.12 2.37 2.3 -1.12 - 0.12 - - -0.0
- - 0.2 - - 1.18 - -2.47 0.8 2.85 - 1.78 - - - -
1.98 - - - - 2.42 - - - 2.74 - - - - - -
-7.03 -0.45 0.25 -0.05 0.8 -0.31 -4.33 0.38 1.21 2.02 0.75 0.08 - - -3.35 -
- -2.01 - - -0.29 0.64 -3.93 -0.37 0.02 1.92 - - 0.01 0.34 1.06 1.75
-1.87 -1.72 0.22 0.38 1.03 1.04 - -2.97 1.46 1.92 -1.19 -1.01 -1.42 -3.11 -1.18 -1.55
-7.9 -7.38 0.8 0.53 0.58 1.15 -1.41 -0.39 1.25 2.15 -0.85 -0.86 -7.54 -7.63 -6.56 -
-5.94 -10.75 -2.85 -2.2 -0.19 -2.12 -1.64 -0.17 0.27 -0.27 -1.67 -2.51 1.9 1.43 1.15 1.11
- - - - - 1.18 - 1.35 - 2.86 0.9 - - 1.03 - -
-5.18 -1.8 0.3 0.54 0.81 1.51 -0.65 -0.16 1.7 1.43 -2.51 -2.78 -2.38 -2.96 -2.6 -2.92
-2.63 -8.17 1.02 0.96 2.34 -1.39 0.51 -3.42 0.35 1.57 -2.21 -4.02 -3.68 -5.77 - -1.8
-0.23 -1.26 -0.44 -0.91 -0.02 0.33 -0.36 -0.34 0.53 1.32 0.11 0.08 0.06 -0.15 -0.16 -0.42
- - 1.66 0.99 0.79 1.43 - -1.42 0.23 1.61 0.33 -0.78 - - - -
-6.04 - -2.55 -1.46 0.31 1.31 0.09 0.84 -1.23 2.5 0.64 -0.24 -2.87 -2.87 -4.71 -3.22
-2.08 -2.87 -0.74 -0.17 0.65 0.3 -0.88 0.11 0.86 1.05 0.73 0.06 -0.92 0.23 -0.02 -1.23
- 0.83 - -1.15 -1.35 1.06 -0.57 -0.81 2.25 1.73 0.03 -0.08 - - - -
-1.87 -4.85 0.19 -0.73 0.6 1.08 -1.18 -3.45 0.68 1.37 0.21 -0.66 0.06 -0.08 0.36 -0.89
-1.77 -0.46 -1.14 -0.87 -1.32 0.75 0.02 0.84 0.93 1.97 -0.54 -0.52 -1.27 -2.97 -0.54 -0.61
- - 0.57 0.67 0.43 -0.06 -2.71 -0.55 1.7 2.22 -1.34 0.53 - -5.54 - -
-1.26 - - -1.66 - -0.44 -2.67 -1.21 0.18 0.65 -1.32 -1.42 -0.09 1.4 - 2.79
- -0.2 1.38 - 1.48 0.05 -1.36 0.78 0.69 2.06 - -0.32 - - - -
-1.05 -1.52 -0.27 -0.71 0.27 0.81 -0.54 -0.17 1.13 1.34 0.33 0.23 -0.96 -1.19 -1.26 -0.56
- - -1.84 - - - - -3.52 -1.24 -0.6 -2.15 -2.25 2.39 0.97 1.63 1.94
- - 1.35 1.69 2.05 - - - - 2.6 - - - - - -
-0.28 0.11 0.06 0.3 0.7 0.03 -0.34 -0.44 0.64 0.86 0.07 0.37 -0.97 -1.34 -1.02 -0.87
- - - - - -4.3 - -4.94 - -3.62 - - 2.1 1.54 -0.38 2.98
-6.76 -7.99 -1.17 -1.12 1.06 -1.02 0.79 1.71 1.68 0.75 0.29 0.49 - - - -
-1.56 -1.42 -2.95 -2.25 0.08 0.53 -0.54 1.19 1.53 0.02 -1.14 -1.69 0.51 -0.06 -0.47 0.76
- - 0.84 - -0.03 - - 1.51 1.41 1.47 - - 1.75 0.66 - -
-4.64 -4.4 -2.17 -1.94 1.57 -1.53 1.15 2.37 1.45 -0.55 -4.71 -3.82 -2.07 -2.16 -4.09 -0.61
-1.36 -0.79 - -3.52 0.04 -0.35 -0.29 1.21 0.28 -0.5 -2.56 - 1.76 0.44 -0.43 1.28
- - 1.95 0.66 1.03 1.14 -1.68 -3.36 -0.4 1.83 0.28 -1.41 - - - -
-0.41 -1.83 - - -0.66 0.05 -0.52 0.53 - 1.46 - - - 1.24 - 2.59
- -2.19 0.43 -1.33 -0.53 0.21 1.02 -6.31 2.4 2.05 -1.41 -1.52 - - - -
-2.73 -3.0 0.34 0.28 0.85 -0.07 0.65 0.11 0.48 1.72 0.47 0.13 -2.26 -2.86 -3.26 -2.28
- - 1.4 1.74 -0.63 1.2 - -0.33 0.39 1.67 -0.1 -0.21 - - - -
- - - - - - - - - 4.0 - - - - - -
-1.1 -0.48 0.13 -0.02 1.42 0.36 -1.76 -0.54 1.13 1.2 -1.24 -1.28 -0.51 -0.7 -1.05 -0.56
-0.64 -0.1 -0.88 -0.7 1.1 -0.42 0.29 1.24 0.95 0.73 0.06 -0.13 -1.42 -2.21 -2.17 -1.17
- - - - - - - - - 0.66 - - 2.35 0.84 2.91 -
-1.82 -3.57 -1.37 -1.2 0.74 0.37 -0.18 -2.27 1.08 1.82 0.54 -0.1 -0.24 -0.48 -1.73 -0.24
-0.03 -1.67 -0.55 -0.94 0.26 -0.04 -0.15 1.23 0.69 0.8 -0.24 -0.67 0.17 -0.27 -0.99 -0.32
- -1.8 -0.28 -0.21 -1.91 0.27 -3.01 0.01 0.69 2.19 -0.01 0.64 0.33 -2.05 - 0.27
-3.45 -0.28 0.61 0.05 0.84 0.42 0.45 -0.31 -0.12 2.09 -0.03 -0.48 -3.42 -3.08 -5.25 -3.03
-5.42 -6.16 -0.07 -1.42 0.94 0.49 0.57 2.37 1.11 0.39 -4.0 -0.86 - - -0.77 -
-2.52 -0.47 0.69 0.6 0.59 -0.06 0.63 -0.29 0.05 1.03 -0.15 0.4 -1.13 -1.72 -2.15 -0.22
- -0.05 -1.11 -0.81 -1.58 -0.13 - -5.38 0.92 -0.03 -0.4 -1.1 1.7 -0.15 1.86 -0.22
-0.04 -0.54 -1.27 -1.09 0.89 -0.19 -1.07 -0.62 0.78 0.77 -1.51 -0.44 0.47 -0.04 0.22 0.65
- - - - - - - 1.76 - 3.1 - 2.03 - - - -
-1.07 -2.78 -0.61 -0.65 0.08 0.43 0.48 0.83 0.24 1.8 -0.47 -0.28 -0.15 -0.44 -3.43 -0.82
-1.95 -0.13 -1.94 -0.99 0.9 0.81 -1.61 0.55 1.35 1.87 -1.0 -1.25 -1.91 -1.12 -1.41 -1.28
-1.43 0.17 0.23 -0.22 0.65 -0.08 0.48 -1.03 1.05 1.12 -0.01 0.37 -2.28 -1.87 -0.19 -2.41
-2.46 -4.28 -0.68 0.43 1.16 0.94 -1.94 -0.61 1.34 1.46 0.77 -0.19 -1.91 -2.7 -2.62 -1.85
- -2.14 -1.53 -0.19 0.18 0.44 -2.2 0.8 -0.94 0.12 - - 0.38 0.28 - 2.58
-1.01 -2.77 -0.66 -0.47 1.1 0.24 -0.15 1.11 1.13 1.22 -0.35 -1.12 -1.19 -1.45 -1.12 -0.73
-1.71 1.28 -2.73 -2.4 2.04 -0.96 -0.15 -1.52 1.79 0.99 -1.07 - -1.82 -1.91 -0.84 -
-0.38 0.2 -0.22 0.35 0.56 -0.42 -0.22 -0.27 0.72 0.93 -0.24 -0.42 -0.14 -0.82 -1.03 -0.1
1.2 - - - - - - 1.69 - 2.09 1.12 2.02 - - - -
- - 0.92 -1.5 0.81 -1.5 0.25 -0.44 1.6 2.33 -1.17 0.09 - -2.82 - -
- - - - - - - - 2.99 2.45 - 1.39 - - - -
-3.33 - 0.13 -0.73 1.16 0.38 0.6 1.33 1.0 1.43 -0.31 0.02 -4.78 -5.88 - -3.91
-2.05 -1.13 -0.08 -0.91 0.22 0.72 -0.87 1.34 0.2 1.28 -2.34 -3.18 0.49 - - 1.41
-7.19 - 1.09 -1.09 0.94 0.14 0.9 0.7 -0.96 1.61 0.9 0.53 - - - -
-5.41 -1.4 -3.21 -2.72 -0.7 0.78 -2.03 0.9 0.68 2.32 0.99 0.91 -2.48 -3.28 - -2.6
- - - - - - - - 3.4 2.44 - - - - - -
-0.33 -0.98 -0.46 -0.58 0.8 -0.21 -0.68 -0.84 0.71 1.25 0.46 0.42 -0.57 -1.09 -0.34 -0.24
-1.23 -2.59 -1.15 -1.3 0.94 0.29 -1.29 1.34 1.44 1.21 0.02 -0.54 -1.03 -1.35 -1.93 -0.77
- - 1.36 -2.14 1.68 -0.03 - -4.2 0.6 1.8 1.58 -0.01 - - - -
-4.58 -0.97 1.25 -1.11 1.1 1.04 -2.66 -0.13 0.77 1.92 -0.47 -0.15 -5.2 -4.3 -3.23 -4.33
-0.32 -0.86 -0.23 0.24 0.82 -0.04 -0.52 0.84 0.71 0.73 0.24 0.76 -1.63 -1.67 -1.73 -1.8
-0.72 -2.54 -1.03 -1.04 0.05 0.49 0.57 0.72 -0.14 0.77 -0.46 -0.45 0.47 -0.17 -0.06 0.45
-2.43 -2.7 0.55 0.62 0.89 -2.33 0.8 -1.96 0.4 1.22 1.46 -0.12 -0.82 -0.92 - -2.53
-0.87 -1.15 0.33 -0.03 0.41 0.25 -0.18 1.65 0.2 1.59 -1.84 -0.65 -1.75 -1.37 -2.88 -1.54
-2.45 -3.61 0.11 1.33 1.75 -0.58 - -3.79 0.96 1.79 0.74 -0.11 - -4.85 - -
-7.64 - -0.22 0.01 -0.14 1.16 -4.81 1.38 1.4 1.71 0.5 -0.2 -3.96 -4.25 - -4.5
-0.71 -1.22 0.26 0.72 0.4 0.33 -0.42 0.41 0.68 1.82 -0.44 -0.96 -1.52 -2.19 -2.34 -1.69
-0.46 0.29 -0.18 0.18 0.27 0.04 -0.32 -0.88 0.89 1.07 0.04 0.15 -0.73 -1.26 -1.11 -0.17
-0.87 -2.4 -0.86 -0.25 0.3 0.41 -0.17 -0.59 0.49 0.77 -0.48 -0.15 0.5 0.32 -0.19 0.58
- - 1.07 -0.3 0.53 1.42 -2.04 1.09 -0.98 2.02 -1.49 0.75 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.