Heatmap: Cluster_10 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	stage A1 (Dhaka et al., 2020)	stage A3 (Dhaka et al., 2020)	M-81E strain-control (Sun et al., 2020)	M-81E strain-salt (Sun et al., 2020)	Roma strain-control (Sun et al., 2020)	Roma strain-salt (Sun et al., 2020)	root (Murray et al., 2022)	shoot system (Murray et al., 2022)	119 days old-Postflowering drought stress (Varoquaux et al., 2019)	84 days old-control (Varoquaux et al., 2019)	84 days old-Preflowering drought stress (Varoquaux et al., 2019)	35 days old-control (Varoquaux et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)
Sobic.001G056500.1	-2.14	-7.19	2.06	0.55	1.51	0.04	-0.08	-0.67	-5.03	-1.36	0.87	0.3	-2.11	-2.15	-3.72	-0.58
Sobic.001G059001.1	-	-	2.77	-0.01	2.52	-0.38	-0.6	-3.01	-	-	-	-1.36	-	-1.02	-	-
Sobic.001G088600.1	-0.23	-	2.78	-	1.88	0.77	0.09	0.86	-	-	-	-	-	-	-	-
Sobic.001G104100.1	-1.16	0.4	1.0	-0.0	1.28	-0.52	-0.09	-2.69	-2.86	-2.79	-3.02	-0.99	0.94	1.13	-	1.0
Sobic.001G233100.1	-	-	3.29	-	1.74	-	1.38	-	-	-	-	-1.88	-	-	-	-
Sobic.001G239601.1	-0.64	-1.13	2.98	-0.64	1.23	-0.59	-1.81	0.99	-2.56	-	-3.47	-1.25	-	-	-1.26	-
Sobic.001G275700.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G279701.1	-	-	2.94	1.82	-0.53	1.6	-1.32	-	-	-	-	-0.61	-	-	-	-
Sobic.001G322766.1	-	-	3.07	-	1.18	1.06	-	-	1.7	-	-	-	-	-	-	-
Sobic.001G326000.1	-	-3.5	3.73	0.76	-	-	-	-	-	-	-	-	-	-	-0.02	-
Sobic.001G345333.1	-4.27	-5.01	3.09	1.4	1.06	-1.21	-0.57	-3.25	-2.63	-	-1.54	-0.87	-	-2.49	-2.57	-3.71
Sobic.001G362900.1	-	-	3.2	-	1.46	-	-	-1.49	-	-	-	0.71	-	-	1.05	-
Sobic.001G382900.1	-4.78	-2.66	2.74	0.41	0.72	-4.01	1.65	0.77	-4.99	-2.93	-0.99	-2.68	-	-4.75	-1.68	-3.77
Sobic.001G439050.1	-	-	-7.16	-	-	-	-	-	-	-	-	-	1.41	2.01	2.32	2.1
Sobic.001G446800.1	-2.31	-3.48	2.03	1.5	0.68	-0.71	-0.52	-0.03	-0.05	-0.54	-0.69	-2.07	-0.17	-0.22	-2.73	-0.96
Sobic.001G449100.1	-3.73	-2.84	3.37	-0.23	1.52	-2.15	-2.79	-	-4.11	-	-2.21	-0.12	-	-	-	-2.91
Sobic.001G459000.1	-	-	1.77	-	-	-	-	-	-	-	-	-	-	-	3.65	-
Sobic.001G516200.1	-4.4	-	0.31	-0.26	0.78	-1.63	-3.27	-0.21	-	-	-	-3.03	2.13	0.03	1.62	1.19
Sobic.001G535900.2	-	-	3.78	-	0.59	-	-1.54	-	-	-	-	-1.29	-	-	-	-
Sobic.001G541166.1	-2.54	-1.42	2.28	0.41	0.68	0.63	-1.74	0.47	0.32	-1.62	-3.0	-3.1	0.14	-2.33	-	0.39
Sobic.002G082800.1	-	1.74	1.3	1.52	2.51	-0.52	-0.23	-6.98	-	-	-5.1	-4.72	-	-	-	-
Sobic.002G100832.1	-4.0	-	3.86	-0.54	-2.86	-4.33	-2.17	-	-	-	-3.29	-2.14	-	-	-	-
Sobic.002G105300.1	-	-	3.59	1.35	-1.33	-3.06	-0.18	-6.72	-	-	-	-	-	-	-	-
Sobic.002G144025.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G145550.1	-	-	0.93	-	-	-	-	-	-	-	-	-	-	-	3.82	-
Sobic.002G150301.1	-2.56	-3.58	2.26	-0.14	-0.11	-1.67	-3.67	-3.94	-3.78	-4.11	-2.04	-0.27	-1.62	0.6	2.46	-3.32
Sobic.002G157600.1	-	-	3.55	-	-	-	-	-	-	-	-	2.11	-	-	-	-
Sobic.002G163200.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G169000.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G175200.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G199300.1	-	-	-0.53	-	-1.4	-	-	-	-	-	-	-	0.38	3.09	2.35	-
Sobic.002G208800.2	-	-	3.68	1.68	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G219600.1	-	-	2.57	0.59	1.37	-	-	0.58	-	-	-	-	2.16	-	-	-
Sobic.002G228500.1	-1.07	0.82	1.73	0.0	1.65	-0.77	-0.12	1.47	-2.02	-1.61	-3.06	-2.32	-0.83	-1.0	-	-4.27
Sobic.002G243300.1	-	-	3.12	-	0.39	1.32	0.58	-	-	-	1.03	-	-	-	-	-
Sobic.002G249400.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G321800.2	0.85	0.02	2.16	-	2.22	-	1.4	0.51	-	-	-	-	-	-	-	-
Sobic.002G337400.1	-0.67	-2.49	3.29	1.18	-1.11	0.05	-2.99	-2.07	-4.42	-2.48	-2.59	-1.49	-3.65	-2.94	-1.67	-
Sobic.002G338450.1	-	-	3.11	0.77	2.31	-	-	-0.94	-	-	-	-	-	-2.46	-	-
Sobic.002G342400.1	-2.04	-	3.61	0.52	0.85	-2.41	-5.37	-6.15	-5.93	-6.87	-4.52	-5.94	-	-	-	-
Sobic.002G426900.1	-2.65	0.4	0.94	-0.95	0.93	-0.92	0.26	-0.27	-5.52	-6.3	-3.78	-1.95	0.98	0.45	0.45	1.36
Sobic.003G015500.1	-	-	2.77	-	2.3	-	-	2.09	-	-	-	-	-	-	-	-
Sobic.003G017000.1	-	1.77	3.23	-	-	-	1.14	-	-	-	-	-0.04	-	-	-	-
Sobic.003G043550.1	-	-	3.24	1.32	0.78	1.22	-	-	-	-	-	-	-	-	-	-
Sobic.003G106400.1	-	-	3.35	-	2.46	-	-	-1.94	-	-	-	-	-	-	-	-
Sobic.003G115700.1	-0.71	-0.75	1.55	-0.15	1.53	0.56	0.96	0.78	0.1	-1.02	-1.4	-1.86	-1.73	-3.11	-2.52	-2.77
Sobic.003G125751.1	-	-	3.35	0.82	-0.98	-	-0.78	1.13	-	-	-0.42	-	-	-	-	-
Sobic.003G136100.1	-	-	3.37	-	2.5	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G145500.1	-1.1	0.02	2.58	-	1.46	-	-0.5	0.52	0.87	-	-	0.87	-	-	-	-
Sobic.003G147200.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G157450.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G165700.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.003G232200.2	-6.26	-	2.76	0.94	1.5	1.17	-3.15	-2.06	-	-	-2.49	-3.34	-0.39	-2.08	-1.59	-2.1
Sobic.003G281200.1	-1.8	-0.83	2.23	0.32	0.42	-0.31	1.69	-0.85	-3.69	-2.88	-0.56	-0.63	-0.65	-1.34	-2.25	-0.99
Sobic.003G281300.1	-2.29	-5.76	2.96	0.42	-0.57	-0.72	-0.72	-0.19	-1.94	-1.48	-1.24	-1.52	0.31	-0.9	-2.65	-0.79
Sobic.003G293900.1	-3.88	-3.09	2.13	0.71	1.89	-0.64	-1.25	0.3	-2.27	-2.16	0.39	0.76	-4.47	-4.04	-2.25	-4.59
Sobic.003G294800.2	-	-0.17	2.82	-	0.62	-	-	1.14	-	-	-	2.1	-	-	-	-
Sobic.003G303200.1	-2.27	-4.66	2.63	0.85	1.12	-0.78	1.02	-1.1	-4.85	-5.79	-2.05	-1.05	-1.34	-2.8	-0.95	-0.55
Sobic.003G368550.1	-	-	-1.21	-	-	-	-	-	-	-	-	-	3.01	1.92	-	1.89
Sobic.003G376000.1	-2.31	-0.06	2.11	0.6	0.96	0.78	1.1	-2.46	-6.95	-	0.33	0.78	-	-5.71	-	-4.73
Sobic.003G385800.1	-	-	2.8	-	1.91	-	-	-	-	-	-	2.4	-	-	-	-
Sobic.003G395000.1	1.08	-	2.88	-	-	-	-	-	-	-	-	-	-	2.7	-	-
Sobic.004G014700.1	-	-	3.43	0.86	-	0.82	-	-	-	-	-0.79	0.1	-	-	-	-
Sobic.004G098650.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G121800.1	-	-	2.46	1.11	1.28	1.45	0.19	-3.63	-	-	-2.45	-0.97	-	-	0.33	-
Sobic.004G162800.1	-	-	1.58	-0.08	1.28	-	-1.1	-3.08	1.18	-	0.28	-	2.48	-	-	-
Sobic.004G168100.1	-	-	3.7	1.59	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G180200.1	-4.88	0.56	2.48	0.4	1.89	-4.14	1.58	-2.17	-	-	-1.45	-4.55	-	-	-2.22	-
Sobic.004G206900.1	-0.77	0.3	1.24	-0.75	0.22	-0.95	-1.95	-1.24	-0.52	-3.46	-1.42	-3.53	1.89	0.06	-1.19	1.29
Sobic.004G221200.1	-	-	3.36	-	2.1	-	0.18	-1.89	-	-	-	-	-	-	-	-
Sobic.004G318900.1	-	1.46	1.26	0.88	2.02	0.96	0.11	-4.58	-	-	-0.65	-0.34	-	-1.1	-	-
Sobic.004G333150.1	-	-2.68	3.4	-	1.97	-2.08	-	-	-	-	-1.37	-0.47	-	-	-	-
Sobic.004G340500.1	-0.87	-2.04	1.97	0.46	0.38	1.21	1.17	-0.22	-5.59	-5.53	-2.18	-0.5	0.46	-4.34	-3.23	-0.52
Sobic.004G345001.1	-1.59	-	2.8	1.51	0.92	-0.03	-2.1	-2.7	-	-2.34	-1.3	-2.41	0.48	-	-	-1.23
Sobic.004G346600.1	-	-	2.5	-	-	-	-	-	-	-	-	-	-	-	3.37	-
Sobic.004G348400.1	-5.28	-4.62	2.39	1.42	0.82	-0.23	1.01	-3.29	-	-	0.27	0.93	-	-3.66	-3.18	-
Sobic.004G356800.1	-0.85	-1.09	1.79	0.28	0.96	-1.3	-0.13	-0.37	-0.56	-0.84	-0.19	-1.82	0.59	-0.39	-1.09	0.18
Sobic.004G359900.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G002100.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G013700.1	-	0.01	2.8	-	1.91	-	0.11	-0.92	-	-	-	1.42	-	-	-	-
Sobic.005G039350.1	-	-	2.54	-	-	-	-	-	-	-	-	-	-	3.35	-	-
Sobic.005G042600.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G051050.1	-	-	3.17	2.11	1.36	-	-	-3.19	-	-	-	-	-	-	-	-
Sobic.005G094500.1	-4.78	-7.63	-6.04	-7.7	-5.11	-8.07	-5.25	-8.11	-7.46	-	-	-	2.55	1.9	1.01	2.09
Sobic.005G108601.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G110496.1	-1.39	-3.67	2.76	-0.52	0.59	-1.05	-3.86	-3.98	-6.6	-3.8	-1.64	-0.31	-2.8	-1.79	2.1	-5.08
Sobic.005G114900.1	0.78	-	3.28	-	1.18	-	-	-	-	-	-	-	1.23	-	-	-
Sobic.005G117801.1	-0.08	-	3.39	-	1.63	0.23	-	-1.64	-	-	-	-	-	-	-	-
Sobic.005G129780.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G166432.1	-	-	2.88	1.0	-0.58	-	-3.7	-0.82	-	-	-	-	-0.12	-1.21	1.44	0.34
Sobic.005G183700.1	-	-	3.86	-	-	-	0.6	-	-	-	-	-	-	-	-	-
Sobic.005G184400.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G184500.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G207550.1	-0.5	-1.24	3.18	0.23	-2.8	-	-2.66	-5.69	-	-	-	-	-	-	2.1	-
Sobic.006G010100.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G054000.1	-	-	1.94	-0.38	-2.18	-	-1.39	-0.51	-1.72	-0.08	0.96	-	0.61	0.1	0.58	1.48
Sobic.006G059150.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G099600.2	-	-	2.54	-	-	-	-	-	-	-	-	-	-	3.35	-	-
Sobic.006G106700.1	-0.11	-	2.13	-0.12	1.81	-1.1	0.57	1.03	-6.58	-4.93	-1.09	-1.76	-0.74	-1.97	-5.26	-0.74
Sobic.006G160500.1	-4.08	-4.96	0.02	-2.98	-2.78	-2.11	-4.61	-4.89	-	-7.76	-6.73	-5.25	1.7	1.73	2.71	0.25
Sobic.006G202900.1	-	-	-0.36	-	-	-	-	-	-	-	-	-	2.12	0.44	1.51	2.74
Sobic.006G206900.1	2.42	-	2.36	-	2.47	-	-	-	-	-	-	-	-	-	-	-
Sobic.006G233200.1	-	-	-1.03	-	-	-	-	-	-	-	-	-	2.84	2.33	-	1.72
Sobic.006G235650.1	-	-	1.31	-	-	-	-	-	-	-	-	-	-	2.13	3.2	-
Sobic.007G016500.1	-	1.57	1.89	-	1.6	-	-	-0.79	0.5	-	0.59	1.48	-	-	-	-
Sobic.007G044700.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G045300.1	-2.82	-3.29	2.13	0.18	0.83	-2.88	1.2	-0.53	-1.43	-3.19	-2.56	-	-0.39	-1.26	1.81	-
Sobic.007G056800.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G098000.2	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G098950.1	-1.84	-4.12	2.72	0.84	0.84	0.48	-3.12	-4.13	-2.49	-6.19	-1.34	0.04	-	-2.04	0.99	-3.67
Sobic.007G156500.1	-3.55	-	3.23	0.88	1.78	-0.19	-4.73	-2.81	-	-	-	-	-	-	-	-2.27
Sobic.007G177150.1	-	-	2.64	2.43	2.14	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G206250.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.007G219900.1	-3.91	-1.27	2.65	-0.29	0.98	-1.36	0.79	-0.31	-2.36	-1.93	0.21	0.8	-5.2	-4.49	-4.22	-4.51
Sobic.008G036500.2	-	-	3.09	-	2.9	-	-	-	-	-	-	-	-	-	-	-
Sobic.008G043700.1	-6.13	-	2.42	0.08	0.63	0.94	0.76	-0.11	-1.54	-4.65	-2.03	-0.27	0.31	-2.49	-2.41	-1.19
Sobic.008G066300.1	-	-8.08	-0.96	-1.98	-6.33	-	-2.63	-2.53	-3.68	-3.79	-3.06	-6.86	1.75	2.16	2.03	1.42
Sobic.008G075350.1	-3.67	-	3.25	0.04	0.95	-0.3	-	-5.19	-5.36	-4.3	-3.1	-2.91	-	-2.92	1.07	-5.15
Sobic.008G080300.1	-	-	3.34	-	2.41	-	-	-	-	-	-	-0.86	-	-	-	-
Sobic.008G112900.2	-	-	2.99	-	-	-	-	-	-	2.04	-	1.97	-	-	-	-
Sobic.009G071100.2	-	-	3.86	0.53	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.009G089000.1	-	-	2.31	1.64	1.44	-0.32	-1.95	-1.12	-	-	-0.62	-	-	-	1.61	-
Sobic.009G104850.1	-	-	0.72	-	0.84	-	-	-1.96	-	-	-	-	3.62	-	-	-
Sobic.009G124300.1	-	-	1.96	0.15	-1.12	-	-	-3.97	-	-	-0.48	-	-	1.16	1.65	2.13
Sobic.009G143600.1	-	-	0.93	-	-	-	-	-	-	-	-	-	-	-	3.82	-
Sobic.009G146800.1	-5.03	-3.28	1.95	1.53	1.36	-0.89	-0.06	0.81	-1.94	-1.09	0.04	-0.75	-1.35	-2.08	-4.56	-1.89
Sobic.009G159300.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.009G176333.1	-1.29	-	3.03	0.91	-	-	-0.1	-	1.17	-	0.27	0.16	-	-	-	-
Sobic.009G184500.2	-3.34	-4.17	0.41	-0.68	-1.3	-2.63	-	-	-	-	-	-	1.41	1.4	0.39	2.75
Sobic.009G196400.1	-2.94	-	3.34	1.41	0.83	-1.77	0.0	-5.87	-	-	-	-	-	-	-	-
Sobic.009G220250.1	-	-	3.92	-	-	-	-	-0.15	-	-	-	-	-	-	-	-
Sobic.009G248600.1	-	-	3.18	-0.49	0.68	0.51	0.01	-2.1	-	-	-0.28	0.15	-	-	-	-
Sobic.010G036750.1	-	-	3.66	-	-	-	-	-	-	-	-	1.74	-	-	-	-
Sobic.010G058000.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G075100.1	-	-	3.24	1.65	1.11	-	0.32	-	-	-	-	-	-	-	-	-
Sobic.010G092550.1	-	-	2.96	-	3.04	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G105350.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G154400.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G169250.1	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G218500.1	-1.48	-1.68	2.26	1.09	1.06	-1.4	0.86	0.45	-2.16	-0.25	-0.7	-0.64	-3.47	-3.24	-2.65	-3.4
Sobic.010G238500.1	-	-	3.55	0.83	1.35	-	-	-	-	-	-	-	-	-	-	-
Sobic.010G271400.1	-	-2.88	3.02	1.81	1.21	0.55	-2.9	-	-	-	-	-1.64	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.