Heatmap: Cluster_226 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	stage A1 (Dhaka et al., 2020)	stage A3 (Dhaka et al., 2020)	M-81E strain-control (Sun et al., 2020)	M-81E strain-salt (Sun et al., 2020)	Roma strain-control (Sun et al., 2020)	Roma strain-salt (Sun et al., 2020)	root (Murray et al., 2022)	shoot system (Murray et al., 2022)	119 days old-Postflowering drought stress (Varoquaux et al., 2019)	84 days old-control (Varoquaux et al., 2019)	84 days old-Preflowering drought stress (Varoquaux et al., 2019)	35 days old-control (Varoquaux et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)
Sobic.001G169300.1	-	-	1.39	2.54	0.83	-1.64	0.89	1.21	-0.93	-	-	-	-	-	-	-0.32
Sobic.001G181800.3	-2.11	-2.88	2.06	3.47	-	-1.29	-	-	-	-	-	-	-	-	-	-
Sobic.001G237400.1	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G272100.1	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.001G328850.1	-	-	-	3.42	-	0.47	0.83	-	-	-	-	1.07	-	-	-	-
Sobic.001G339000.1	-	-	2.37	2.56	1.04	0.87	0.05	-	-	-	-	-	-	-	-	-
Sobic.001G367000.1	0.14	0.52	0.47	1.3	0.27	0.08	0.12	-0.12	-0.52	-0.74	-0.12	-0.0	-0.59	-1.1	-1.0	-0.96
Sobic.001G422432.1	-	0.73	1.0	3.42	-0.87	-	-1.67	-	-	-	-	-0.42	-	-	-	-
Sobic.001G433500.1	-	1.62	1.19	3.11	-	-	-	0.99	-	-	-	-	-	-	-	-
Sobic.001G458400.1	-0.71	-1.08	0.76	2.81	0.38	0.85	0.51	-1.57	-6.42	-7.36	-2.37	-1.22	-3.76	-2.65	-1.4	-3.2
Sobic.001G458500.1	-4.13	-	1.12	3.1	0.37	1.54	-3.76	-4.22	-	-	-	-	-	-	-0.19	-
Sobic.002G002900.1	-0.32	-	-1.46	2.88	1.25	1.32	-0.55	-0.23	-	-	-	0.12	-	-	-	-
Sobic.002G016100.1	-	-	-0.22	3.12	-	-1.83	-2.47	0.4	-	-	-	-1.23	-	-	2.09	-
Sobic.002G071201.1	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G151800.2	-	-	-0.55	3.24	-0.43	1.73	-2.23	-	-	-	0.12	-0.99	-	-	-	-
Sobic.002G165200.1	-	-	0.18	2.47	-2.05	-1.14	-	-4.9	-0.52	-	-	-1.53	1.33	1.82	-	0.62
Sobic.002G232300.1	-	-	1.83	3.64	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.002G249101.1	-	-2.49	1.29	3.14	0.98	-0.49	-0.97	-2.13	-1.87	-	-2.78	-1.3	-	-	-	-1.68
Sobic.002G331450.1	-2.01	-1.8	1.72	2.62	-3.93	-0.87	0.33	-0.07	0.5	0.35	-2.31	-3.42	-	-	-	-2.26
Sobic.002G363466.1	-	-	1.46	3.4	-	1.45	-	-	-	-	-	-	-	-	-	-
Sobic.002G401566.1	-	-	2.08	3.01	-	-	-	-	-	-	-	-	-	1.89	-	-
Sobic.002G417101.1	-	-	1.94	3.3	0.64	-0.61	-3.07	-	-	-	-	-	-	-	-	-
Sobic.003G006866.1	-	-	-0.02	2.68	-	-	-	-	0.55	-	-	-	-	-	2.83	-
Sobic.003G074900.1	0.31	-0.18	0.83	1.17	-0.13	-0.47	-0.54	0.01	-1.33	-1.26	-0.43	-0.64	0.21	0.02	-0.2	0.36
Sobic.003G102300.1	-	-	0.19	2.89	-3.09	-2.26	-1.39	1.75	-	-2.6	-4.15	-4.25	-0.31	0.01	0.4	-
Sobic.003G129700.1	-	-	0.66	1.8	-1.21	-	-	-	-	-	-	-	0.57	3.17	-	-
Sobic.003G217566.1	-	-	-	3.62	-	-	-	1.88	-	-	-	-	-	-	-	-
Sobic.004G029200.1	-	-	2.46	3.39	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.004G070300.1	-	-	-	1.97	-	-	-	-0.45	-	0.2	-	0.16	1.46	0.37	-	2.34
Sobic.004G083000.1	0.05	-0.78	0.74	1.48	0.81	0.03	0.43	-0.51	-0.75	-0.88	0.26	-0.11	-1.35	-1.33	-1.13	-0.73
Sobic.004G105001.1	-2.48	-	2.22	3.15	0.53	-0.61	-2.26	-	-	-	-	-	-	-	-	-
Sobic.004G149433.1	-2.06	0.18	1.86	2.02	-	-0.26	0.56	-2.57	-	-	-	-	0.92	-1.41	-	1.15
Sobic.004G154532.1	-	0.51	2.19	2.54	-	-	-	-	-	-2.22	-	-	-0.0	0.71	-	0.46
Sobic.004G209450.1	-	-	2.32	3.27	-	-	0.31	-	-	-	-	-2.76	-	-	-	-
Sobic.004G239301.1	0.02	-	1.86	2.98	-	-	1.72	-2.6	-	-	-	-	-	-	-	-
Sobic.004G325500.2	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.005G092301.1	0.1	-0.4	1.76	1.98	-2.59	-	-0.98	-2.01	-1.73	-1.09	-0.32	-	-0.07	0.51	-0.42	0.29
Sobic.005G099400.1	-	1.27	2.11	3.0	-1.57	-1.14	-2.37	-5.37	-	-	-2.01	-	-	-	-	-
Sobic.005G150250.1	-	-	-0.23	2.91	-	-	-	-	-	0.42	-	-	-	-	2.65	-
Sobic.005G159400.1	-	-	1.95	3.2	-	-	1.42	-4.52	-	-	-2.18	-	-	-	-	-
Sobic.005G216700.2	-	-	1.97	3.0	-2.29	0.13	1.49	-	-	-	-	-	-	-	-	-
Sobic.006G066150.1	-	-	-	0.23	-	-	-	-	-	-	-	-	2.78	2.27	-	1.66
Sobic.006G149650.1	-	-	1.51	3.44	-	0.49	-0.17	-	-	-	-	-	-	-	-	-
Sobic.006G266850.1	-	-	-	3.36	-	2.41	-	-1.21	-	-	-	-	-	-	-	-
Sobic.006G279000.1	-	-	1.89	3.44	-	-1.39	-0.44	-	-	-	-1.67	-	-	-	-	-
Sobic.007G045750.1	-	-	-3.15	-1.21	-	-	-	-	-	-	-	-	2.34	1.24	2.31	1.63
Sobic.007G064250.1	-0.8	-	1.01	2.05	-	-	-	-0.84	-	-	-	-	2.25	1.64	-	-0.2
Sobic.007G124200.1	-5.92	0.11	1.75	2.0	-0.11	0.1	-0.36	-0.38	-0.0	-0.85	0.23	-0.56	-2.49	-2.78	-2.77	-3.03
Sobic.007G137201.1	-	-	0.45	3.59	-	-0.58	-0.22	-	0.04	-	-	-	-	-	-	-
Sobic.008G080600.1	-	-	1.44	3.42	-1.43	-0.6	-	-	-	0.66	-	-	-	-	-	-
Sobic.008G168866.1	-	0.92	0.63	3.65	-	-	-	-	-	-	-	-	-	-	-	-
Sobic.008G181100.2	-1.23	0.95	2.53	2.22	-	-3.95	-0.52	-	-3.32	-	-3.23	0.91	-	-	-2.05	-3.15
Sobic.009G018200.1	-1.97	-	-2.2	3.11	-0.48	-2.24	-	-0.73	0.1	1.79	-1.55	-2.23	-1.87	-	-	-
Sobic.009G245200.2	-	-	-0.32	1.82	-1.19	-1.36	-	-	-0.75	-	-	-	0.6	0.5	2.57	0.47
Sobic.010G002500.3	-1.02	-3.92	1.39	2.29	1.48	0.13	0.17	-3.11	-3.2	-2.09	0.65	-0.37	-4.67	-4.99	-5.84	-5.23
Sobic.010G043350.1	-	-	-	1.18	-	-	-	0.03	-	-	-	-	-	-	3.67	-
Sobic.010G101950.1	-	-	1.36	3.59	-	-	-	-	-	-	0.5	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.