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Heatmap: Cluster_224 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -1.51 -0.17 1.79 1.27 3.14 -4.17 - - - - - - - -
- - -0.72 -1.27 1.2 0.94 2.51 -0.12 -3.53 - 0.84 0.88 - - -1.26 -
-3.06 -0.54 -0.63 -0.53 0.81 0.61 2.19 0.12 -3.16 -4.91 0.39 1.06 -1.03 -1.63 -2.06 -1.57
-11.57 - 1.22 0.5 1.19 0.86 2.44 -5.12 -9.17 -8.11 -0.36 0.95 - - - -
-3.36 -3.11 -0.23 -0.63 1.31 -0.58 1.28 -1.66 -1.24 -1.5 -1.46 -3.57 -0.64 1.68 1.34 -0.35
-1.21 -2.11 -1.1 -0.83 0.67 0.3 1.72 -1.27 -0.6 -1.11 0.05 0.2 0.55 -0.38 -1.71 0.95
-1.17 -1.1 -0.88 -0.2 0.49 0.17 1.57 -0.41 -0.53 -0.4 0.18 0.67 -0.08 -0.43 -1.16 0.14
-1.02 0.04 -0.39 -0.02 0.86 1.24 1.82 0.36 -8.77 -6.13 0.96 0.37 -2.61 -3.99 -4.12 -2.29
-6.8 -0.97 -1.42 -1.6 1.02 0.92 2.2 0.5 - - 1.28 1.22 -5.35 -7.03 -5.96 -5.47
-1.63 - -1.62 -0.46 0.52 0.37 1.19 -0.41 - - -1.2 -0.76 1.64 0.15 -0.43 1.52
-5.04 -2.83 -1.78 -1.87 -0.71 -0.79 0.59 -1.91 - -7.78 -1.74 -0.39 1.09 1.32 2.15 1.12
-7.88 - -0.83 -1.97 1.16 0.73 2.03 0.74 - - -2.35 1.26 0.18 -0.32 -4.78 -0.03
- -1.31 0.11 0.15 1.58 0.86 2.63 -1.2 - - 0.31 -0.47 - - - -
- -6.57 -4.92 - 2.16 0.63 3.25 -4.56 - -6.26 -1.9 -3.16 - - - -
- - -3.17 -0.26 1.77 0.88 2.68 -4.23 - - -0.51 0.84 - - -0.28 -
-0.94 -1.4 -0.45 -0.97 1.47 -0.12 2.19 -1.62 -5.41 -3.96 0.43 0.95 -1.17 -0.44 -2.67 -0.8
- - 0.12 0.61 2.42 0.79 2.26 -3.4 - - -0.64 -0.5 - - -3.98 -
-6.92 -4.66 -1.58 -0.98 0.35 0.06 1.37 -1.0 -4.6 - -2.19 0.29 2.0 0.47 -1.27 1.28
-3.44 - -2.63 0.29 2.26 0.8 2.34 0.27 - -1.99 -1.96 0.26 - - - -
-1.25 -2.37 0.28 0.27 1.34 0.58 2.15 0.17 -3.59 -5.37 -0.89 0.35 -1.0 -1.61 -2.1 -1.31
-1.54 -4.91 -0.13 0.29 0.97 -0.03 1.87 0.97 -5.56 -4.28 0.38 1.14 -1.3 -1.96 -2.01 -1.25
-2.38 -0.42 -0.46 -0.34 1.67 1.56 1.6 0.83 -5.33 - -0.52 0.82 -5.61 -4.12 - -5.73
-6.35 - 0.33 0.03 1.14 -0.2 2.76 -1.52 - - 0.26 0.46 -2.65 -2.05 -2.09 -1.61
- - - -0.58 2.38 1.86 2.22 0.01 - - - -0.34 - - - -
-3.02 -5.11 -0.19 -0.74 0.33 1.14 1.63 0.28 -3.39 -1.14 -0.24 0.01 0.56 0.53 -1.45 -0.14
-1.48 -0.86 -0.64 -1.0 0.36 0.08 0.56 -0.3 -1.05 -1.72 -0.59 -0.16 1.07 1.12 -0.21 0.88
- -2.67 -0.81 -0.8 1.77 -1.85 3.08 -5.2 - - -2.47 0.52 - -3.32 -0.25 -
-3.7 -3.21 -0.16 0.3 1.17 1.09 2.13 -0.73 -0.02 -1.65 0.32 0.26 -2.87 -3.23 -2.48 -2.58
-2.81 -1.37 0.03 0.33 1.13 0.67 1.62 -1.58 -0.28 -0.46 0.16 0.8 -1.94 -1.55 -0.7 -1.39
-2.43 - 0.38 0.13 1.74 1.31 1.86 -1.77 - - 1.06 0.69 - - - -
-2.84 -2.85 0.22 0.59 1.3 0.87 2.08 -0.5 -2.25 -2.83 0.93 0.33 -3.53 -4.63 -3.56 -3.07
-0.54 -2.19 -0.55 -0.45 0.42 0.37 0.96 0.47 -1.67 -5.36 -0.4 0.67 0.85 0.04 -0.56 0.61
- -5.87 0.4 0.3 1.37 0.03 2.98 -1.95 - - 0.17 -0.89 - - - -
- - -0.98 -0.06 - 0.99 0.93 - - -0.33 0.29 -1.4 1.51 0.83 0.9 0.8
-1.85 -2.76 -0.06 -1.07 1.84 -0.43 2.86 -1.82 -7.07 -5.59 -1.1 -0.44 -1.32 -2.38 -3.26 -1.6
-2.71 -1.95 0.27 0.11 0.95 0.66 2.35 -1.51 -3.5 -3.86 0.31 0.96 -2.59 -2.57 -1.62 -1.49
- -8.24 -0.01 0.63 1.47 1.19 2.11 -1.66 -4.85 -3.01 1.11 0.51 - - - -6.83
-2.86 -5.48 0.13 -0.38 1.6 0.6 2.44 -0.17 - - 0.49 0.78 - - - -
-1.23 -2.55 -0.15 -0.3 0.34 0.81 1.73 -0.05 -6.77 -4.9 -0.7 0.28 0.13 0.44 0.02 0.06
-1.07 -0.9 -0.39 -0.4 1.19 1.32 1.52 -0.91 -2.06 -1.0 -0.26 0.33 -0.41 -1.24 -1.75 -0.04
- - -1.05 -0.61 0.78 0.92 2.48 -0.75 -0.09 -0.31 0.31 0.27 - -3.86 -0.27 -
-0.41 - 0.61 0.71 0.71 1.93 2.29 -2.7 -0.34 -1.29 - -1.35 - - - -
-0.58 -1.11 -0.27 -0.38 0.5 0.3 1.2 -1.14 -2.98 -2.36 0.2 0.12 0.73 0.11 -0.06 0.71
-3.24 -2.66 0.07 -1.03 1.26 -0.64 2.0 0.26 0.14 -0.44 -1.16 0.1 -2.15 -0.11 -0.59 -0.36
-0.38 -0.69 0.32 -0.09 0.38 0.52 1.47 0.76 -1.09 -2.5 0.24 0.93 -1.31 -2.56 - -0.14
-5.28 -4.61 -1.07 -0.32 0.62 0.06 1.34 0.06 -3.55 -0.32 -0.75 -0.43 0.7 -0.09 0.8 0.98
-4.83 -1.85 0.57 0.29 1.52 0.56 2.33 0.42 -0.43 -2.96 -0.4 -0.64 - - - -
-2.13 -5.27 -1.17 -1.18 -0.01 -0.47 0.5 -1.24 -1.49 -1.81 -1.29 0.05 1.02 1.39 0.46 1.68
-5.13 - 0.17 -1.11 1.57 0.95 1.85 1.23 - - -1.86 1.34 -2.03 -1.86 - -2.16
- - -2.22 -0.56 2.62 1.27 2.34 -4.87 - - - -1.07 - -2.4 -0.33 -
-8.08 - -1.46 -3.47 1.13 -0.05 2.66 -1.57 - - 1.27 1.72 - -5.45 - -
-5.01 -1.6 0.34 -0.32 1.4 0.78 2.31 0.93 - -6.76 -1.37 0.73 - -6.57 -1.7 -
-4.27 - -0.3 -0.33 1.18 0.08 2.2 -0.17 - - -2.8 -0.59 0.44 -1.07 0.42 0.64
-7.35 -5.33 -2.77 -5.59 0.71 1.27 2.59 0.42 -0.76 0.51 0.19 0.18 - - -3.29 -
- - -1.4 - 1.15 1.56 3.03 -5.63 - - - -1.43 - - 0.91 -
-4.13 -4.03 -1.72 0.19 1.15 1.5 2.63 -2.55 -1.53 -1.45 0.78 -0.87 -4.33 -5.43 - -
-3.55 - -0.69 -0.94 1.38 1.41 2.06 0.91 - - -2.59 1.04 -1.37 -1.66 - -0.91
- - -1.21 -5.1 1.87 -0.08 3.4 -5.2 - - -3.03 -2.06 - - - -
- - -0.03 -2.1 1.86 0.73 2.16 -4.54 - - 1.33 1.32 - - - -
-5.93 - -1.31 - 1.79 0.17 2.21 0.27 -0.92 -1.59 0.58 1.48 - - - -
- - -0.1 0.12 1.71 0.54 2.89 -4.79 - -5.69 -0.3 -0.24 - - -3.42 -
-2.76 -2.42 -0.45 -1.0 0.73 0.73 1.84 0.83 - - -1.47 1.41 -0.5 -0.6 - 0.45
-1.48 - - -2.83 1.7 1.45 2.75 -2.05 -1.01 -2.53 -0.5 -0.43 - - -1.27 -
-9.77 -1.86 -0.15 -0.36 1.74 0.4 2.09 -1.73 0.2 -1.8 0.66 0.86 - - - -
- - -0.7 -3.69 1.88 0.7 3.27 -4.12 - - -3.33 -2.44 - - - -
-7.72 -7.47 -0.66 -0.35 1.01 1.05 2.26 -2.73 -3.35 -2.53 1.48 0.81 -1.62 -2.86 -3.45 -2.55
- - -0.56 -0.89 1.58 0.76 2.98 -5.97 - - 0.72 -1.57 - - -2.43 -
0.37 - - -0.47 - 1.74 1.84 - - - 0.87 - - 0.01 2.08 -
-1.29 -2.96 -3.37 -1.88 0.93 0.09 2.08 -0.32 -1.58 -1.27 0.36 -0.24 0.5 0.0 -0.91 0.33
-0.28 -4.17 0.31 0.29 0.85 0.38 2.17 0.67 - - -0.89 0.51 -0.33 -2.84 -2.36 -1.46
- - -0.92 - 1.53 0.85 2.21 0.68 - - -0.26 1.44 -0.01 - - -
-2.16 -0.77 -1.06 -0.48 1.8 0.94 2.42 -3.09 -0.48 -3.88 -3.84 0.8 - -2.12 - -1.73
- - -0.16 -0.56 2.89 1.07 2.13 - - - -1.8 -1.91 - - - -
-2.79 -2.35 0.34 -0.53 1.41 0.85 1.58 0.46 -0.38 -2.96 0.01 0.49 -1.17 -1.73 -1.37 -1.2
-6.77 - 0.66 0.72 1.13 0.36 2.39 -2.66 -6.99 - 0.62 1.14 -4.65 - -4.67 -3.77
-3.8 -3.0 0.22 -1.2 1.0 0.44 2.39 - -2.25 -0.87 -0.15 0.74 - -0.98 -0.99 0.37
-2.75 -3.33 -0.78 -0.94 0.34 0.05 0.89 0.3 -3.58 -2.04 0.1 0.42 0.83 0.95 0.35 0.61
-1.83 -1.09 -0.66 0.34 1.53 0.54 1.88 1.08 -1.04 -1.83 -0.63 -1.35 -0.97 -1.37 -2.73 -1.45
-0.83 -2.52 0.35 -0.02 0.34 0.54 1.7 -0.91 -4.27 -4.34 0.17 0.16 -0.03 0.29 -0.58 0.37
-2.2 -7.16 0.7 0.18 0.71 1.03 2.0 -0.18 - - -1.51 0.6 -0.28 -1.6 -3.7 0.45
-7.63 -6.4 0.59 -1.25 1.47 0.9 2.6 -5.2 -4.52 -4.18 -0.95 1.3 -4.95 -6.3 -2.98 -3.51
- -8.82 0.52 -0.79 1.21 1.44 2.64 -5.04 - - -0.99 1.14 - - - -
-5.24 -4.93 -0.85 -1.05 0.43 0.91 1.87 -0.26 -2.4 -1.37 0.31 0.46 -0.15 -0.61 0.24 0.34
-1.54 -3.68 0.38 -0.1 1.06 0.56 1.65 1.35 -7.85 -3.47 -0.45 1.34 -2.56 -2.9 -3.95 -1.33
- - -2.71 -1.38 2.23 1.22 2.03 -1.29 -2.14 - 1.44 -1.14 - - -0.82 -
- - -0.93 - 1.35 0.99 2.06 0.48 - - 1.33 1.28 - - -1.21 -
- - -1.1 -1.16 1.13 1.36 2.34 1.26 -6.6 - 0.15 0.81 - - - -
- - 1.14 -0.1 0.66 2.35 1.46 - - - 0.27 1.17 - - - -
-5.53 -3.14 -1.8 -3.13 -1.75 -1.36 -1.01 -2.1 - - -3.8 -2.79 2.25 2.28 -0.99 1.9
-3.28 -0.8 -0.28 -0.55 0.83 1.13 1.5 0.38 -1.92 -1.96 0.09 0.59 -0.48 -0.88 -0.98 -0.23
-3.71 -3.37 0.68 -0.06 0.96 1.25 1.64 1.05 -0.72 -2.91 -0.92 0.79 -1.0 -5.9 - -2.12
-4.62 -6.87 -1.65 -1.03 0.11 -0.76 0.64 -0.88 -2.84 -1.4 -1.81 -1.09 1.81 1.82 -0.79 1.32
-2.22 -2.79 -0.41 -0.55 1.56 0.08 2.32 -1.48 - - -1.95 -1.32 0.8 -0.43 - 0.78
- -4.66 -0.3 0.01 1.79 0.73 2.9 -4.09 - - -0.9 -0.06 - - - -
- - 0.63 -0.79 1.7 1.17 2.82 -6.8 -3.53 - -1.85 -3.54 - - -0.24 -
- -4.23 -1.21 -0.45 1.56 1.25 2.33 -0.88 -2.4 -3.92 1.05 0.64 - - - -
-1.94 -1.1 -0.02 0.3 0.78 1.06 1.37 0.3 -3.79 -4.32 -0.3 1.01 -0.43 -0.56 -1.08 -0.72
-2.52 -0.91 -0.6 -0.89 0.43 0.61 1.51 -0.61 0.33 0.12 -0.04 -0.33 0.26 -0.15 -2.45 0.38
-1.02 -3.36 -0.7 -1.28 0.39 0.81 1.3 0.24 - -5.73 -2.05 0.1 0.81 0.92 -1.49 1.24
-4.25 -4.18 -1.76 -2.87 0.31 -0.9 0.86 0.18 -2.36 -2.37 -0.58 -0.15 -0.0 1.04 1.89 1.02
-3.01 - 0.17 0.27 0.56 1.21 2.5 -2.24 -3.56 -3.5 - 1.13 -2.25 -3.34 -0.27 -1.37
- - -1.05 0.87 1.66 1.09 2.14 -4.71 - - - -1.47 - - 1.84 -
-1.08 -1.35 -0.25 -0.82 -0.28 0.01 0.74 -0.27 -3.54 -2.37 -0.48 0.08 1.04 0.74 0.33 1.24

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.