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Heatmap: Cluster_246 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.85 0.04 -0.03 0.12 0.33 -0.13 0.03 -0.25 -1.95 -2.15 0.19 0.06 0.26 0.06 0.0 0.22
0.43 -1.48 -1.31 -0.68 -1.18 -0.67 -0.3 -0.31 0.07 -0.52 0.24 0.82 1.02 0.54 -0.39 0.72
1.28 -1.73 -0.3 -0.94 -0.67 -1.51 0.43 -0.46 0.19 -1.83 0.46 0.58 0.55 0.32 -0.61 0.3
1.33 0.68 -0.14 0.1 -0.17 -0.19 0.25 -0.94 -0.95 -0.91 0.09 -0.2 -0.1 -0.43 -1.24 0.43
2.46 - 0.55 -0.7 0.1 -1.39 0.26 -1.1 - - 1.48 1.12 - - - -1.57
0.65 -0.08 -0.04 -0.11 0.1 -0.04 0.01 -0.78 -0.25 -0.56 0.25 0.5 -0.22 -0.01 0.23 -0.32
1.04 -1.29 -0.34 -0.87 -0.45 -0.45 -0.15 -1.93 -1.44 -1.23 0.61 0.4 0.15 0.62 0.81 0.6
1.09 0.27 -0.34 -0.31 -0.37 -0.27 0.38 -1.34 -1.42 -1.87 0.61 0.24 0.34 0.03 -0.33 0.41
1.1 -0.08 0.0 0.03 0.13 -0.14 0.09 -2.1 -1.62 -1.91 1.09 1.42 -0.83 -0.73 -0.7 -1.23
0.12 -4.14 -1.59 -1.55 -2.19 -1.19 -0.68 -2.53 - - -1.09 -0.59 1.53 1.47 -0.19 2.34
1.5 0.05 -0.41 -0.84 -0.11 -0.21 -0.62 -0.97 -4.23 -3.44 -0.08 0.24 0.43 0.42 0.2 0.82
0.59 -0.0 0.11 -0.16 0.01 -0.3 0.16 -0.49 -3.54 -2.79 0.34 0.45 0.53 0.0 -0.72 0.96
0.63 -1.45 -0.91 -0.98 -1.05 -0.41 -0.43 -0.48 -0.23 -1.05 0.63 -1.34 1.46 0.43 -0.26 1.09
0.65 0.49 -2.57 -2.29 -1.07 0.23 -3.06 1.42 -1.27 -1.26 0.91 0.45 0.49 -0.02 -0.78 0.22
1.08 0.48 -0.02 -0.32 0.26 0.01 0.1 -0.78 -0.81 -1.0 -0.17 0.38 -0.25 -0.2 0.05 -0.27
0.98 -0.05 -0.57 0.04 -0.53 -1.16 0.21 -1.26 0.57 -0.24 1.89 0.03 -1.14 -1.99 -2.45 -0.49
0.11 -0.31 -0.72 -0.89 -0.31 -0.33 -1.0 -2.0 -0.41 -0.86 -0.12 0.03 1.18 0.58 0.45 1.17
0.88 -0.92 0.08 -1.86 0.0 -1.11 -1.54 -1.09 -2.62 -2.15 0.28 -0.22 0.72 1.09 0.7 1.1
2.65 - - - - - - 0.4 - - 1.9 2.23 - - - -
1.24 0.05 -0.22 -0.26 0.4 -0.46 -0.46 -0.18 -0.8 -0.89 0.91 1.3 -1.25 -1.51 -0.8 -1.12
1.37 0.53 -2.65 -1.9 0.47 -0.52 -1.11 1.05 -2.57 -2.46 0.98 1.69 -2.18 -2.86 -0.66 -1.39
2.6 - 0.01 - - -0.01 - - - - 2.3 1.6 - - - -
2.15 - 0.13 - - 0.12 - - 0.76 - 1.86 - 2.02 - - -
-0.14 -2.55 -1.94 -2.44 -4.81 -1.59 -1.71 -0.52 -1.57 -2.73 -0.33 -1.58 1.67 1.67 1.2 1.49
0.71 -0.69 -0.08 -0.5 -0.02 -0.68 -0.11 -0.38 0.78 0.61 0.36 1.24 -1.72 -1.44 -0.58 -0.82
0.99 -0.64 0.34 0.13 0.39 0.31 0.33 -1.1 -1.77 -2.27 0.41 0.61 -0.23 -0.07 -0.34 -0.35
2.97 - 1.28 - - - - - - - 2.53 - - - - -
0.32 -0.34 -0.53 -0.89 -0.27 -0.26 -1.26 -1.71 -1.25 -1.94 -0.45 -0.28 1.08 1.06 0.94 1.0
0.53 -0.35 -0.18 0.15 0.3 -0.11 0.47 -0.16 -0.09 -0.51 0.84 -0.04 -0.53 -0.68 -0.67 -0.0
0.71 -0.88 -0.37 -0.38 -0.26 -0.17 0.41 -0.21 0.04 -0.29 0.41 0.29 0.08 0.05 -0.09 -0.12
1.02 - - - -0.35 - 0.17 -0.14 - - 0.78 1.09 2.43 0.92 - -
-0.97 -3.22 -3.35 -3.01 -1.49 -3.38 -2.8 -4.02 - - 0.07 -0.27 2.06 0.52 1.12 2.28
1.15 1.0 0.37 0.35 0.86 0.65 0.24 -1.41 -1.45 -2.47 0.77 0.76 -2.51 -5.61 -3.53 -4.63
2.66 - - - - - - - - - 3.27 - - - - -
1.79 - - - 1.15 - 1.94 - - - 2.7 - - - - -
2.14 - -2.69 -3.78 -2.86 -2.88 -1.92 0.53 -0.08 -1.33 2.06 1.89 -3.84 -4.35 -5.86 -5.38
1.93 -5.2 -1.71 -5.12 -2.42 -5.59 -3.01 -0.88 0.38 0.57 1.31 1.82 -3.17 -0.02 -2.92 -0.11
1.16 0.79 -0.76 -0.14 -0.71 -0.07 0.41 -1.81 -1.15 -1.12 0.33 0.04 0.12 0.08 -0.65 0.48
1.84 -1.89 -1.12 -1.42 -0.23 -0.75 0.55 0.86 -3.22 -1.84 0.89 1.53 -1.23 -1.65 -2.19 -1.01
1.18 -0.24 -0.31 -0.53 -0.02 -0.1 -0.13 -1.0 -1.09 -0.72 0.49 0.3 0.38 -0.04 -0.23 0.27
2.21 1.3 0.02 - 1.5 - -0.2 - - - 2.08 - - - - -
1.37 -0.19 -0.06 -0.32 -1.52 - - -0.6 -1.08 - 1.6 -1.09 0.27 0.17 1.24 0.14
2.41 - - - - 2.2 - - - - 2.61 - - - - -
0.92 0.28 -0.11 0.38 -0.23 -0.7 -0.06 -1.26 -0.85 -0.89 0.86 1.13 -0.91 -0.52 -0.16 -0.73
1.13 -0.48 0.12 -0.4 0.27 0.48 0.09 -1.11 -1.82 -0.81 0.18 0.16 -0.07 -0.1 0.25 -0.08
1.56 -2.97 -0.6 -1.2 -4.87 - -1.58 -2.19 -2.42 -2.36 0.07 0.48 1.56 0.68 0.48 1.32
1.24 -0.63 -0.31 0.09 -0.16 -0.96 0.15 -0.85 -0.6 -0.23 1.19 1.36 -1.41 -1.52 -1.36 -0.78
1.38 0.65 -0.03 -0.07 -0.01 0.17 0.34 -1.21 -0.58 -0.3 0.25 0.54 -1.26 -1.22 -0.87 -0.85
1.03 0.08 0.35 0.28 0.15 0.5 0.1 -0.45 -3.83 -6.23 0.24 0.37 -0.2 0.08 -0.0 -0.75
0.57 -0.53 -0.24 -0.21 -0.0 0.05 0.17 -0.79 0.02 -0.27 0.44 0.47 0.33 -0.24 -0.41 -0.11
1.27 -0.15 0.04 -0.14 -0.14 0.17 -0.48 -1.41 -0.36 -0.22 0.57 0.94 -0.86 -0.7 -0.37 -0.61
1.03 -0.46 0.42 -0.02 0.2 0.31 0.04 -1.07 -0.92 -0.9 0.04 0.43 -0.35 -0.15 0.17 -0.39

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.