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Heatmap: Cluster_57 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -2.05 - 3.0 2.69 -2.43 - - - -2.17 -0.59 - - -2.33 -
-6.46 - -1.63 0.03 2.61 2.65 -2.56 -5.62 -3.65 -2.64 -0.16 -0.37 -4.1 -4.39 -3.54 -
- - - -1.88 2.77 2.79 - - - - - - - -1.4 0.67 -
- -7.17 - - -3.29 -1.74 -5.68 -6.0 - - -5.33 -7.02 1.78 2.19 2.22 1.52
- -6.08 -0.39 -1.67 2.35 1.87 1.69 -3.45 - -3.05 -2.53 -2.12 -0.8 -0.98 -1.1 -0.39
- - -1.29 -2.51 - -0.55 - -3.31 - - - - 2.18 1.5 2.31 1.21
- 1.37 -0.36 - 2.09 0.61 -1.03 -4.03 - - - - - 1.79 1.52 -
-2.58 -4.42 -0.06 -0.73 2.87 2.19 -1.19 -3.86 -1.43 -2.51 -2.42 -3.1 - - 0.01 -
- - -0.64 -0.95 2.92 1.53 0.44 -1.11 - - -9.8 - 0.15 -1.41 -2.48 -0.13
- - -0.7 -0.98 2.95 1.64 -1.21 -1.44 - - - - 0.93 -0.88 -1.68 -1.04
-0.88 0.49 -0.77 0.57 1.47 2.26 -3.03 0.14 0.23 - - -0.78 - - 0.53 -
0.54 -7.41 -2.11 -1.08 1.87 2.57 0.85 -4.35 -3.9 -3.49 -1.24 -3.12 -2.08 -2.63 0.15 -2.61
- - -0.39 -3.04 3.02 2.32 -1.27 - - - -2.67 -0.46 - - -0.52 -
- - 1.37 - 1.82 2.41 -3.22 - - - -1.81 1.4 - -1.74 0.33 -
- - - - 3.11 1.56 -0.45 - - 0.86 0.89 - - - - -
- - - - 3.23 1.89 -0.75 - - - - - - - 1.23 -
- - - - 3.28 2.48 -0.51 - - - - - - - - -
- - 0.52 1.24 2.6 2.42 -0.58 - - - - -3.43 - - - -
-2.74 -1.5 - - 2.3 2.38 -0.01 1.35 -1.34 - - - -0.0 -1.1 - -
- -3.84 0.83 -0.03 1.68 3.07 -2.35 - -3.34 - 0.22 -3.35 - - - -
-5.03 -5.25 -1.43 -3.29 3.03 2.48 -3.48 -12.13 - - -0.81 0.09 - - - -
- - - - 2.98 3.02 - - - - - - - - - -
- 0.08 - - 0.16 0.99 - -1.04 - - - - - - 3.5 -
- -0.15 0.38 -0.88 2.51 1.93 -0.88 - - - - - - - 1.68 -
-4.83 - -0.42 -1.73 2.22 2.24 1.26 1.14 - - -2.4 -1.51 -2.15 -2.66 - -
-4.99 -1.04 -3.2 0.13 2.68 1.89 0.25 -2.92 -3.64 0.88 -1.54 -0.84 - - - -
- -4.75 -0.92 - 2.75 1.67 1.79 -5.3 - -3.62 -0.78 0.48 - - - -
- - - - 3.0 3.0 - - - - - - - - - -
- - 0.26 - 3.42 2.0 - - - - - -3.7 - - - -
-5.66 - 0.24 -0.67 2.71 1.85 -0.5 -1.49 - - -2.86 -2.86 -0.03 -0.02 -2.74 -0.83
-5.59 -2.78 -0.94 -1.77 0.38 0.15 -0.51 -1.47 - - - -2.51 1.12 2.0 1.83 0.73
-0.32 -0.63 0.04 -0.61 1.97 1.27 -0.31 -1.9 - - -2.38 -1.77 -0.42 1.74 -1.41 -0.96
-0.8 -2.4 -1.09 -0.89 0.4 0.97 -1.58 -1.37 -2.89 -4.26 -1.55 -3.1 1.26 1.55 1.26 0.9
- - -2.97 0.09 2.41 3.19 -2.88 -6.95 - -4.06 -3.13 -4.05 - -8.26 - -
-1.97 -0.09 -0.75 0.07 1.67 2.12 -1.26 -1.88 -1.03 -0.97 -0.56 -0.36 -1.41 -1.39 0.57 -2.09
- - - - - 1.34 -0.3 0.52 - - - - - 1.19 - 3.16
- - - - - 4.0 - - - - - - - - - -
- -1.28 - - 2.84 0.8 1.17 - - - - - - - 2.14 -
-3.03 -2.94 -1.0 -0.46 2.31 2.23 -1.17 -1.83 -0.42 -0.44 -0.11 -1.05 -3.35 -3.01 -0.12 -3.36
- - - - 3.51 1.9 -3.28 -0.72 - - - - - -2.79 - -
-1.04 - - - 2.02 1.66 -3.05 -6.09 - - - - 1.52 0.23 1.08 0.98
- - - - 0.07 0.9 - -2.71 - - -0.39 - 1.85 0.76 1.83 1.73
- - -5.4 -3.48 0.67 1.5 -2.1 -1.49 - - - - 1.62 0.74 0.23 2.31
-2.45 -0.72 -2.94 - 2.88 2.73 - - - - - - - -3.13 -0.06 -
0.37 - - -1.43 2.95 2.73 - - - - - - - - - -
- - - 0.61 2.41 2.57 1.61 - - - - -2.48 - - - -
-4.38 - -0.44 -2.74 2.01 1.79 1.14 0.31 -4.48 - -3.38 -0.4 0.82 -1.47 - 0.16
- - 0.51 - 2.22 2.42 -0.65 -4.96 - - - -0.15 - - 1.59 -
- - -1.4 -1.56 2.82 2.73 -5.47 -8.44 -5.23 - 0.22 -1.54 - - - -
-4.03 -2.78 -3.13 -4.68 1.92 0.89 1.55 -3.95 -6.03 - -0.32 -0.31 1.16 -0.16 0.21 0.16
-2.64 -0.07 -2.28 -2.52 2.52 1.68 -1.37 -1.54 -1.68 -0.56 -4.17 -5.28 -0.5 0.34 0.48 -1.27
-9.98 -9.74 1.2 1.1 2.69 2.11 -2.2 -2.53 -7.25 -3.01 -1.91 -5.0 - - - -
- - - - 2.81 2.62 1.36 -3.29 - - -3.54 -3.65 - - - -
- - - - 3.27 2.61 - - - - - - - - -2.15 -
-4.43 - -0.05 0.83 2.89 2.32 -1.3 - - - -3.97 -2.49 - - - -2.84
- - - - 2.63 2.06 -1.17 - - - - - - - 2.38 -
- -3.42 - - 1.35 3.52 -1.54 0.15 - - -2.2 -2.3 - - - -
- - - - 3.26 2.68 - - - - - - - - - -
-4.6 1.51 -4.91 -4.25 2.25 2.06 -0.39 -1.68 -2.43 -1.03 0.94 -1.63 - -3.77 - -
-4.12 0.51 - - 2.7 2.84 - -1.49 -2.69 - -1.6 - - - - -
-7.2 - -0.74 -2.47 2.57 2.76 0.7 -6.24 - - -1.71 -1.91 -3.48 -3.99 -3.5 -4.6
-0.35 -6.34 -0.82 -2.64 1.44 1.6 0.06 -0.76 -0.81 -2.56 -0.72 -0.57 -0.17 1.02 0.57 -0.53
-1.66 -1.79 -3.25 -1.43 -0.4 -0.22 -1.62 -1.7 -2.28 -2.65 -1.8 -2.06 1.83 2.05 0.72 1.29
-7.44 - -1.02 -1.12 2.68 1.95 -1.33 -1.71 - - 1.0 -0.4 -1.57 -1.67 -2.77 -0.96
- - 0.11 0.3 2.64 1.43 -4.38 -9.53 -7.31 - 1.47 0.95 - -5.48 - -
-10.81 - -0.2 -0.76 2.61 1.4 -0.03 0.11 -8.47 - 1.16 0.57 -7.12 -8.22 -7.14 -5.24
- - -0.25 -0.98 2.29 2.29 0.48 -2.2 -6.64 -7.58 -0.07 1.16 -5.29 -6.39 - -6.41
-5.07 -4.81 0.63 0.09 2.53 1.22 -1.09 0.71 -1.72 -0.71 -3.65 -3.78 -2.41 - 0.89 -
-3.91 -1.73 -1.03 -1.07 2.63 2.25 0.62 -3.36 -2.15 -3.52 -0.56 -0.61 -3.82 -3.61 -2.15 -4.32
- - - - 2.65 1.82 -0.45 0.59 -1.53 -1.47 -1.44 - -1.18 -0.28 - 0.69
-5.74 - -2.4 -3.65 2.49 2.65 0.96 -2.3 -4.42 -2.36 -1.52 -0.62 - -4.16 -2.09 -3.19
-4.69 0.61 -1.68 -1.2 2.51 1.71 -0.32 -3.08 -0.59 0.5 0.07 -0.58 - - - -
- -1.42 0.06 -0.8 1.69 2.68 0.98 -0.0 - - -0.79 -0.31 - - - -
- - - - 3.59 1.94 - -3.51 - - - - - - - -
-0.26 -1.87 -0.34 -0.63 1.32 1.36 -0.88 -1.25 -0.84 -0.38 -0.02 -0.82 0.3 -0.07 -0.26 0.61
- - 0.61 - 2.09 2.29 2.41 - - - - - - - - -
-3.78 0.99 0.5 - 2.33 2.79 - - - - - -0.79 - - - -
-6.25 - 0.04 0.27 2.18 2.76 -1.35 -1.37 - - - - -0.8 -1.67 -2.24 -0.81
-6.36 -5.13 -2.31 -5.14 2.73 3.13 -2.63 -3.43 - - -4.78 -5.89 - -4.67 - -
-1.68 - -0.44 - 3.07 2.58 - - - -2.79 - -3.86 - - -1.55 -
- - - - 3.12 2.47 0.51 -1.48 - - - - - - - -
- - -7.96 -8.22 2.31 2.19 0.57 -0.62 - - - - 0.45 -0.82 -2.07 1.12
-6.33 - - - 2.79 2.74 -0.59 -0.91 - - - - -1.03 -3.13 -2.64 -1.28
- - - - 2.72 2.91 - 0.9 - - - - - - - -
-1.76 0.32 - - 2.73 2.82 -1.89 - - - - -1.05 - - - -
-2.52 -5.09 -0.91 -0.7 1.29 1.17 0.48 -0.39 -0.52 -0.27 -1.82 -1.46 -0.27 0.44 -0.03 1.3
-2.57 -2.76 0.09 -1.09 2.32 2.5 -1.95 -2.23 -5.76 -4.7 -2.5 -2.6 -1.41 -0.08 -0.85 -0.37
-5.1 -2.52 0.3 0.61 2.86 2.03 -3.58 -1.33 -2.94 -3.19 -3.29 -3.66 -2.43 -1.92 -2.38 -2.79
-7.41 -6.23 -1.13 -0.42 2.03 1.92 1.6 -0.39 -1.33 0.03 -0.27 -0.21 - - - -
- - - - 2.33 2.94 0.17 0.29 - - - - - - -0.08 -
- - -0.41 - 2.68 2.54 0.24 -3.35 - - -0.3 -0.08 - - - -
- - - - 2.65 2.41 2.04 - - - - -1.8 - - - -
- - -5.55 -5.38 2.34 3.44 - - -6.12 - - - - - -5.84 -
- -6.88 -0.54 -0.59 2.07 3.37 -5.47 -11.81 -5.01 -7.95 -5.78 -6.37 - - - -
-1.13 -0.57 - - 2.74 2.96 - - -2.4 -4.92 -2.57 -4.99 - - - -
- -1.26 -2.25 - 2.92 2.97 - - - - - - - - - -
-5.42 - -6.25 -5.72 2.39 2.92 -6.92 -3.43 0.1 0.88 -4.59 - - - -3.36 -
- - -4.86 -4.39 2.46 3.25 - -4.85 -2.68 -0.51 - - - - - -
- 0.08 - - 3.11 2.66 - - - - - - - - - -
- - - - 2.86 3.13 - - - - - - - - - -
- - - - 3.13 2.8 -3.49 - - - -2.45 - - - - -
-5.13 - -1.04 -0.12 2.31 2.13 1.49 -4.55 - - 0.66 -0.28 - - - -
-4.94 -4.68 0.04 0.4 2.27 2.25 -1.86 -1.24 -1.4 -1.67 -1.56 -3.09 -2.12 -3.03 0.67 -2.24
- - -0.4 0.73 2.3 2.91 -1.41 -4.95 -8.7 - -2.31 -1.16 -4.37 -6.47 - -5.17
- - -0.83 -2.98 2.32 2.01 1.62 -2.93 -4.07 -5.01 -0.8 -0.03 -2.72 0.23 - -2.85
- - - - 3.33 2.57 - - - - - - - - - -
- - -1.82 - 2.65 2.6 0.81 -1.64 - - - - -0.9 -1.46 -2.44 -2.03
-1.44 1.05 - - 2.62 2.89 - - - - - - - - - -
- - -2.71 -0.38 3.24 2.26 -0.21 - - - - - - - - -
-3.03 -3.86 -0.9 -0.51 2.36 2.16 -1.62 1.64 -2.57 -0.77 -0.81 - - -4.02 -3.46 -4.56
-6.15 - -2.05 - 2.35 2.53 1.25 0.33 - - -1.54 -0.17 - - - -
- - -1.21 -1.86 2.78 2.86 -2.54 - - - -2.12 -0.39 - - - -
- - -0.58 -1.47 2.4 2.51 1.48 -6.61 - - -2.16 -0.05 - - - -
-3.91 - -0.55 -0.14 2.52 2.33 0.22 -0.23 - - -0.36 -1.0 - - -1.83 -
-3.5 -6.42 -1.8 -1.97 2.67 2.38 0.13 0.37 - - - -0.2 -1.65 -4.07 - -2.51
- -2.35 -0.59 -3.5 3.23 1.8 0.91 -7.08 - - -2.42 -3.04 - -5.6 - -
-4.44 - -1.17 0.13 3.22 1.73 0.56 -5.7 - - -2.63 -3.06 - - - -
-4.27 -4.02 -3.49 - 0.73 0.93 - - - - - - 1.23 1.97 1.18 1.89
- -2.55 - - 3.48 1.82 - - - - - - - 0.21 - -
-2.4 - - - 2.96 3.0 - - - - - - - - - -
- 0.14 -0.46 -0.7 1.89 2.4 -0.71 0.37 -1.44 -0.8 - - -0.13 - - -0.26
-1.8 -4.12 0.08 0.62 2.69 1.75 -0.18 -3.14 -6.65 -6.59 -1.8 -1.7 -1.88 -1.47 -0.7 -1.45
-3.33 - -2.53 -2.2 0.92 2.93 0.5 -1.6 - - 0.14 0.36 - -0.71 0.36 -
-5.16 - -1.78 -1.71 2.41 1.79 0.96 -0.59 - - 1.39 0.0 - - -1.48 -
-2.63 - -1.72 -3.16 3.08 2.52 - -2.21 -3.6 -2.28 -2.2 -1.79 - -7.26 -3.6 -3.48
- - -1.83 -1.04 1.72 3.04 - -4.68 - - 0.83 -0.46 -1.92 -3.02 -0.36 -
-1.58 - - -0.0 -0.5 -0.95 -2.03 -2.32 - - - - 2.13 1.86 -0.06 2.01
-1.35 0.84 -0.55 -0.26 1.76 0.91 0.31 -0.45 -3.29 -4.43 -1.51 -1.36 -1.29 -2.16 1.67 -1.45
- - -1.07 -1.32 3.16 2.37 - - - - -1.23 -0.85 - - - -
- -0.86 -4.1 - 3.29 0.98 -0.25 1.07 -4.51 -4.45 -1.83 -1.71 - -4.29 - -
-5.4 -1.58 -1.97 -3.22 1.99 2.44 - 1.29 0.55 -0.1 -1.07 -0.81 - - - -
-1.78 -0.76 -1.27 -2.41 2.37 1.38 -6.24 -1.02 -2.14 -3.67 -2.32 -0.08 0.22 0.54 0.46 -0.35
-0.44 0.57 - -1.02 1.36 1.99 - - -0.35 - - - 0.97 1.05 0.95 -
- - -2.95 - -2.24 0.19 -3.04 -6.62 -3.36 -3.3 - - 0.28 1.38 3.1 0.83
-1.77 -3.79 -0.86 -0.98 2.19 2.3 0.23 0.38 -3.06 -1.96 -1.89 -1.51 -1.26 -0.93 -1.43 -1.7
-5.49 -4.43 0.21 -0.81 2.99 2.32 -2.21 -5.25 - -6.79 -1.0 -1.46 - -5.38 -3.31 -6.22
- - - - 2.34 2.93 -0.04 - - - - 1.22 - - - -
- - -3.52 - 2.6 1.97 2.54 -3.03 - - - - - - - -
- - 0.33 - 2.77 2.89 -0.93 - - - - - - - - -
- - -0.29 0.76 2.15 2.28 1.74 -7.2 - - -1.85 -0.79 - - - -
-6.7 - -3.33 -7.17 2.66 2.65 1.7 -6.06 - - - - - - - -
-4.99 -2.03 -0.42 0.18 2.19 1.72 0.58 0.8 -0.63 -0.59 -0.35 -0.76 - -6.76 -4.95 -7.17
- - - -5.91 1.09 0.58 -1.31 -1.13 - - - - 1.65 1.4 1.7 1.3
-0.64 -0.07 -1.19 -0.74 0.35 1.12 -1.45 -2.74 -1.61 -1.82 -1.3 -1.04 0.9 1.0 1.11 0.92
-3.85 -1.35 0.19 -2.73 2.93 1.5 -0.65 0.85 -4.49 - -3.4 -4.5 -0.83 -2.24 - -1.27
-4.96 -6.7 -0.97 -0.84 1.03 0.58 -0.01 -5.84 -2.83 -3.57 -1.9 -1.84 1.82 0.59 0.69 1.54
-2.43 -2.37 -2.27 -1.79 1.95 2.18 -1.36 -2.03 -0.21 -1.33 -0.44 -1.3 0.29 -0.27 -0.67 0.04
-0.57 -2.65 -1.11 -0.57 2.67 1.42 -3.47 -7.46 0.37 0.3 0.49 -0.08 - - - -
-3.33 -2.21 -0.24 -0.3 2.0 1.91 0.71 -0.08 -0.42 0.03 -0.5 -0.51 - -2.98 -1.65 -4.33
- - -0.6 0.52 2.52 1.64 -0.73 -6.34 -2.13 -3.91 0.84 1.11 -3.95 -3.05 - -
-0.16 0.41 -1.38 - 1.5 1.9 - - - - - 0.18 - - 2.51 -
-2.96 -4.47 -0.76 -0.47 0.95 0.68 0.03 -1.4 -4.23 -5.67 -0.81 -0.57 0.64 1.12 1.59 0.6
- - -3.18 - 2.58 2.9 - -5.37 - - - - -0.74 -0.66 -0.49 -1.14
-0.7 -1.3 -1.11 -1.06 2.05 3.15 - - - - -0.71 -1.41 - - - -
-1.28 -1.58 -0.88 -0.03 1.7 2.91 -0.26 -7.23 - - -0.11 -0.52 -2.7 -3.22 -4.87 -2.27
- - -0.35 -0.78 2.32 2.95 -0.74 -8.48 - - -0.74 -0.57 - - - -
-1.24 1.47 -1.42 - 2.95 1.72 - - - - - - 0.49 - - -
-4.26 -2.42 -3.48 - 3.27 1.78 0.31 -1.22 -1.33 -0.86 - - - - - -
- - 0.69 -0.11 2.91 2.57 - - - - - - - - - -
- - -0.53 - 3.03 1.94 - - -2.56 -2.49 -1.46 - - -1.08 0.78 -1.32
0.52 1.07 -1.04 -0.1 1.35 2.13 -0.4 -2.74 -2.06 0.11 -1.58 -2.11 -0.85 -1.46 -4.78 -1.49
-1.95 - - - 2.58 3.29 - - - - - - - - - -
-7.36 -6.11 -0.4 -0.67 2.29 2.4 1.66 -6.21 - - -1.24 -0.24 - - - -
- - -2.36 - 2.9 2.1 1.33 -6.01 - - -1.11 - - -1.54 -0.47 -
- - -2.57 -0.23 1.85 2.35 - 0.48 - - -0.09 -1.42 -0.13 -1.75 0.82 -0.77
-0.63 1.11 - -2.96 2.33 2.5 - -3.63 -1.72 - -2.63 - -1.38 -1.48 -0.41 -1.51
- 0.4 -0.37 -0.3 1.88 1.47 1.08 -0.4 - -2.32 -1.28 -1.39 -1.04 -0.14 -0.07 -1.17
- - -0.41 1.18 2.44 2.44 -2.41 -1.48 - - -1.07 - - - 0.15 -
- -2.11 0.38 -1.22 2.69 1.65 -1.22 -1.32 -0.97 -2.24 0.26 0.28 -1.96 -2.05 - -
- - -0.85 - 2.79 3.09 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.