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Heatmap: Cluster_223 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.9 -0.52 -0.8 -1.24 -0.41 0.11 0.38 -0.56 -0.81 -0.91 0.11 -0.61 0.57 0.59 0.2 0.72
1.6 -0.99 -0.27 -0.67 -0.56 -0.21 0.79 1.15 0.58 -0.01 -0.14 0.19 -1.82 -2.07 -2.38 -1.88
0.16 -1.82 -1.34 -2.25 -1.22 -1.4 -0.36 -0.01 -0.82 -0.84 -1.31 -1.55 1.11 1.28 1.28 1.33
0.79 -0.09 -0.77 -1.8 -0.76 -0.75 0.51 -0.16 -1.09 -1.53 -0.48 -0.36 0.48 0.96 1.17 0.06
0.88 -1.36 -0.9 -1.19 -0.15 0.04 0.14 -0.25 -2.0 -0.87 0.04 -0.48 0.54 0.62 0.44 1.02
0.05 -2.32 -2.53 - -2.6 -3.2 -0.46 -0.13 -1.95 -2.38 -2.08 -1.97 1.64 2.05 1.01 1.31
0.68 -0.94 -0.51 -0.77 -0.63 -0.11 0.12 -0.75 -1.41 -1.67 -0.58 -0.55 0.66 0.96 1.32 0.35
0.74 -2.15 -1.26 -1.84 -0.84 -0.86 0.09 -0.23 -4.89 -4.01 -1.25 -2.39 1.69 1.21 0.48 1.45
0.75 -0.3 -0.98 -1.97 -1.21 -0.9 0.35 -0.42 -1.95 -2.25 -0.9 -0.71 0.99 1.02 1.34 0.68
0.6 -0.9 -1.56 -2.01 -1.24 -0.83 0.02 -1.62 -3.27 -2.28 -0.86 -1.19 1.07 1.58 1.39 1.02
-0.63 -5.37 -4.75 -6.94 -4.68 - -1.07 -0.68 - - - - 1.94 1.86 2.01 1.41
0.58 -0.95 -2.09 -1.9 -1.02 -0.41 -0.02 -0.65 -1.01 -1.77 -0.82 -1.85 1.18 1.36 0.99 1.11
1.02 -0.04 -0.35 -1.42 -0.28 -0.08 0.62 -0.1 -1.27 -1.28 -0.41 -0.38 0.04 0.31 1.02 -0.05
0.67 0.0 -0.82 -1.07 -0.4 -0.69 0.22 -0.61 -0.39 -0.25 0.37 -0.48 0.2 0.18 0.71 0.71
1.06 -0.58 -1.33 -0.77 -0.9 -0.14 0.29 -0.05 -1.02 -2.78 -0.06 -0.49 1.01 0.57 0.48 0.51
0.47 -2.07 -1.03 -1.36 -0.91 -0.33 0.15 -0.6 -1.62 -2.49 -0.17 -0.6 1.29 0.97 0.95 1.0
0.11 -1.79 -3.66 -3.94 -2.26 -2.92 -0.59 -0.44 -3.77 -3.36 -1.53 -1.65 1.93 1.6 0.92 1.67
0.41 -0.83 -1.06 -1.84 -0.44 -0.18 -0.14 -0.62 -1.61 -2.54 -1.1 -1.88 1.68 1.72 -0.06 0.57
0.75 -0.95 -1.43 -0.79 -1.06 -0.98 0.07 -0.71 -1.96 -2.25 -0.94 -1.58 1.33 0.86 1.16 1.21
1.69 -0.68 -1.96 -1.59 -0.69 -0.26 1.12 0.88 -1.8 -1.12 -0.46 -1.24 0.44 -0.1 -1.56 0.65
0.74 -0.77 -1.4 -1.91 -0.63 -0.45 0.39 -0.28 -3.2 -2.74 -0.4 -0.22 1.22 0.78 -0.18 1.47
0.84 -1.05 -0.88 -1.16 -0.4 -0.51 0.27 -0.02 -2.26 -2.08 -0.12 -0.17 1.05 0.71 0.32 0.89
0.43 -0.93 -1.49 -1.68 -1.09 -1.0 -0.19 0.11 -1.57 -0.73 -1.43 -0.99 1.25 0.93 0.65 1.52
0.95 -0.77 -0.57 -1.15 -0.22 0.29 0.56 -0.01 -0.96 -1.79 -0.16 -0.5 0.61 0.25 0.44 0.41
0.84 -0.61 -1.62 -2.02 -1.08 -1.37 0.16 -0.3 - -8.47 -1.44 -0.14 1.34 0.98 0.54 1.57
-0.2 -6.28 -5.63 -8.89 -6.76 -4.56 -1.05 -0.45 -2.18 -1.89 -3.35 -2.27 2.02 1.8 0.45 2.04
0.77 -0.19 -0.75 -1.85 -0.71 -0.45 0.31 -0.47 -1.63 -2.1 -0.9 -0.72 0.74 1.06 1.41 0.18
0.69 -0.56 -0.79 -1.59 -0.69 -0.52 0.36 -0.48 -1.63 -1.95 -0.86 -0.59 0.67 0.9 1.52 0.44
0.17 -1.0 -0.7 -0.81 -0.8 -0.55 0.0 -0.58 -1.46 -1.63 -0.57 -0.57 0.96 1.1 1.22 0.86
-0.76 -4.13 -2.39 - -4.06 -3.23 -1.17 -1.43 - -4.57 -3.54 -4.64 2.24 2.03 0.16 2.02
1.4 -1.73 -0.53 -0.62 -0.05 0.08 0.57 0.3 -1.82 -3.07 0.23 -0.52 0.51 0.15 -0.56 0.58
0.53 -2.78 -2.54 -3.16 -1.9 -2.42 -0.27 0.05 -3.14 -2.96 -2.17 -0.95 2.04 1.47 0.82 1.11
0.24 -0.59 -1.8 -2.73 -1.45 -1.38 -0.02 -1.08 -3.83 -3.88 -1.66 -1.72 1.43 1.58 1.55 1.09
0.38 -1.02 -1.25 -1.66 -0.62 -0.6 -0.02 -1.01 -1.89 -1.71 -1.13 -1.24 1.24 1.25 1.05 1.27
2.28 -1.64 -0.52 -0.55 0.68 1.24 1.47 -0.01 -7.67 -6.61 -1.37 -2.32 -1.79 -1.04 -3.76 -2.12
1.99 0.17 -1.85 - -0.85 0.11 1.21 0.68 -2.87 -3.81 -0.32 -0.18 0.65 -1.62 -1.55 -0.06
1.04 -1.31 -3.64 - - - -0.96 -0.01 -1.42 - -1.34 -0.83 1.39 1.47 0.31 2.0
0.13 -2.07 -5.65 - -7.14 - -0.9 -0.05 -3.69 -4.63 - - 1.73 1.54 1.71 1.82
2.84 - - - - - 1.97 2.31 - - - - - - - -
2.26 -0.09 - -2.4 -2.6 -1.45 0.77 0.03 -2.17 - - -1.59 0.18 1.33 -0.84 1.06
0.47 -0.93 -0.61 -1.05 -0.59 -0.5 0.12 -0.63 -1.65 -1.62 -0.41 -0.46 1.03 0.92 0.84 1.0
1.48 - - - -1.19 -3.36 0.47 -0.79 -1.18 - - - 0.92 0.08 -0.43 2.72
0.55 -0.91 -1.37 -1.44 -1.32 -1.15 0.2 -0.3 -3.22 -4.2 -0.97 -1.03 1.15 1.17 1.21 1.32
-0.24 -1.93 -1.63 -3.62 -2.82 -0.9 -0.13 -1.48 -4.37 -3.31 -1.69 -1.58 2.13 1.87 1.11 0.64
1.23 0.74 -1.28 -2.06 0.01 -0.15 0.73 -0.69 -0.27 -0.16 0.62 -0.81 -0.07 -0.94 -1.12 0.46
0.74 0.35 -1.13 -0.8 -0.44 -0.03 0.39 -0.13 -0.11 -0.87 -0.17 -0.71 0.46 0.52 0.21 0.19
0.85 0.17 -0.43 -1.06 -0.54 -0.25 0.46 -0.46 -1.28 -1.54 -0.75 -0.58 0.25 0.86 1.15 -0.05
0.07 -2.78 -1.84 -2.78 -1.84 -1.6 -0.99 -1.33 -1.7 -2.04 -2.17 -3.36 1.88 1.79 1.42 1.11
1.14 0.02 -0.46 -1.05 -1.02 -0.76 0.65 -0.4 -0.98 -1.56 -0.75 -0.44 0.51 0.49 0.95 0.31
0.4 -1.54 -2.92 -3.15 -2.46 -1.83 -0.05 -0.4 -7.17 -5.11 -1.44 -0.73 1.83 1.32 0.25 1.87
0.59 -0.83 -1.2 -1.34 -0.8 -0.42 0.18 0.18 -1.13 -1.36 -0.65 -0.94 1.27 0.74 0.69 0.85
-0.39 -2.36 -2.41 -3.51 -1.45 -0.96 -1.45 -2.07 -3.26 -4.43 -1.97 -1.91 1.59 1.69 1.68 1.67
0.72 -1.06 -1.11 -1.62 -0.3 -0.56 -0.24 -0.89 -3.64 -2.85 -1.05 -1.2 1.3 1.04 1.24 1.12
0.93 -1.92 -0.9 -2.18 -0.58 -0.36 0.54 -0.75 -2.51 -2.63 -0.09 -0.45 1.15 1.2 0.73 0.48
1.24 -0.05 -0.23 -0.55 -1.33 -0.17 0.49 -1.31 -0.78 -1.0 -1.28 -0.94 0.42 0.6 0.43 0.87
0.97 0.25 -0.08 -0.25 -0.45 -0.06 0.62 -0.31 -0.77 -1.01 -0.28 -0.22 0.09 0.26 0.24 -0.25
0.81 -0.81 -1.17 -3.09 -1.16 -1.53 -0.91 -0.11 -7.21 -7.15 -1.38 -0.14 1.34 1.12 0.75 1.67
1.41 - -0.92 -0.98 0.12 0.63 1.06 -1.37 - - -1.22 -0.54 0.81 1.08 0.08 0.2
1.81 -0.76 -1.44 -0.89 -0.41 -0.77 1.23 1.59 0.33 0.11 -0.0 -0.68 -3.33 -3.36 -4.43 -3.33
0.7 -0.6 -1.97 -2.41 -1.96 -1.95 -0.19 -0.01 -1.59 -2.82 -0.81 -1.01 1.04 1.14 1.12 1.55
0.7 -1.28 -1.14 -2.07 -0.84 -0.24 -0.05 -0.69 -2.6 -3.54 -0.28 -1.13 1.01 1.13 0.99 1.36
0.7 -0.73 -2.28 -4.12 -0.69 -0.4 0.48 -0.71 -4.39 -4.82 -1.13 -2.21 1.08 1.07 0.64 1.85
0.79 -0.3 -1.33 -1.7 -1.08 -1.15 0.27 0.03 -1.49 -1.77 -0.73 -0.53 0.93 0.97 0.79 1.04

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.