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Heatmap: Cluster_300 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.47 -3.23 -5.51 -6.12 -4.59 -3.37 -1.7 -2.44 -4.16 -3.4 -2.33 -2.27 1.97 2.26 1.43 1.54
0.44 -0.5 -1.81 -2.27 -1.18 -0.74 0.7 -0.31 -0.68 -0.57 -0.05 -0.58 0.4 1.02 1.04 0.71
0.37 -1.03 -1.66 -1.52 -2.14 -1.39 0.19 -0.2 -1.21 -1.76 -0.65 -0.35 1.0 1.17 0.7 1.54
-0.01 -1.75 -1.21 -1.96 -1.22 -0.52 0.66 -0.36 -0.87 -0.19 0.47 -0.58 0.77 1.05 1.02 0.32
0.6 -1.84 -0.93 -1.13 -0.77 -0.1 0.72 -0.49 -0.38 -0.07 0.63 -0.42 0.5 0.48 0.32 0.35
1.08 -0.45 -1.22 -1.38 -0.82 -0.72 0.81 0.33 0.04 -0.27 0.47 0.14 -0.03 0.02 -0.33 0.05
0.64 -0.89 -1.11 -1.39 -0.99 -0.8 0.53 -0.31 -0.38 -0.67 -0.39 0.06 0.65 0.91 1.06 -0.01
0.27 -1.1 -1.03 -1.1 -0.61 -0.37 0.73 -0.13 -0.19 -0.34 0.66 -0.15 0.41 0.62 0.45 -0.04
-0.28 -0.94 -1.72 -2.03 -1.05 -1.12 0.19 -0.96 -0.91 -0.72 -0.36 -0.67 1.46 1.17 0.89 1.07
0.85 -1.09 -1.14 -1.54 -0.92 -1.07 0.67 0.22 -0.15 0.2 0.44 -0.66 0.84 0.46 -0.21 0.13
0.06 -0.27 -5.14 -7.26 -0.58 -1.1 0.92 0.06 0.49 -0.73 0.12 -0.36 0.97 0.33 0.28 0.78
0.03 -0.16 -1.26 -1.49 -0.77 -0.27 1.01 -0.45 -0.29 -0.44 -0.02 -0.15 0.69 -0.35 -0.15 1.26
0.23 -2.11 -2.39 -3.57 - -1.24 -0.32 -1.9 -2.28 -2.98 -1.02 -0.9 1.31 1.4 1.12 2.06
0.4 -1.53 -1.34 -1.25 -0.84 -0.27 0.41 -0.02 -0.51 -0.31 0.4 -0.35 1.04 0.54 -0.28 0.89
0.52 -0.64 -0.94 -0.97 -0.53 -0.47 0.36 -0.13 -0.45 -0.77 -0.28 -0.17 0.63 0.73 0.62 0.59
0.09 -0.69 -0.81 -1.38 -0.47 -0.04 0.42 0.03 0.27 -0.45 0.53 -0.02 0.17 -0.02 0.58 0.43
0.42 -0.31 -0.79 -0.4 -0.24 0.23 0.78 -0.11 0.26 0.21 0.89 0.0 -0.46 -0.86 -1.2 -0.08
0.44 -0.58 -1.24 -1.12 -0.76 -0.35 0.45 -0.4 -0.59 -0.27 0.18 -0.11 0.64 0.54 0.25 0.88
1.09 -1.71 -2.04 -2.57 -3.51 -1.27 0.77 0.03 -1.1 -0.78 0.11 -1.69 0.77 1.03 1.07 0.7
0.37 -1.0 -0.96 -1.38 -0.46 -0.13 0.29 -0.47 -0.38 -0.45 0.3 -0.02 0.42 0.73 0.8 0.33
-0.18 0.07 -0.97 -0.98 -0.93 -0.8 1.23 0.14 -0.22 -0.08 0.36 0.52 -0.04 0.16 -0.4 0.19
0.42 0.15 -4.26 -3.7 -0.61 -0.86 1.57 -0.4 0.02 -0.21 1.28 0.51 0.02 -0.86 -1.96 -0.1
-0.05 -0.19 -0.59 -1.01 -0.44 -0.43 1.05 0.17 0.06 -0.15 0.28 0.46 -0.08 -0.12 -0.18 0.07
0.72 -0.69 -1.13 -1.81 -0.45 -0.44 0.56 -0.47 -0.88 -0.81 -0.21 -0.71 0.86 0.71 0.98 0.4
0.14 -1.25 -1.61 -1.61 -0.88 -0.67 0.87 0.12 0.27 -1.01 0.14 -1.53 1.2 0.23 -0.8 1.35
0.97 -1.54 -1.56 -1.78 -1.56 -1.1 0.3 -0.32 -0.81 -1.48 0.34 -0.82 0.98 1.14 0.19 1.1
0.21 -2.3 -1.89 -1.53 -1.79 -0.02 0.98 -0.1 0.63 0.21 0.79 -1.26 0.36 0.32 - 1.3
0.68 -0.12 -1.74 -1.56 -1.12 -1.91 1.12 -0.08 -0.59 -0.29 0.2 0.01 0.14 0.59 0.6 0.3
-0.13 -1.87 -1.74 -1.65 -1.82 -1.47 0.84 -0.19 0.14 -0.67 0.06 0.11 0.77 0.9 0.46 1.06
0.4 -0.55 -0.72 -0.57 -0.43 -0.08 0.48 -0.32 -0.07 -0.29 0.38 -0.02 0.26 0.35 0.34 0.07
0.91 -1.12 -1.5 -1.99 -1.04 -0.79 0.35 -0.17 -1.06 -0.44 0.19 -0.81 1.03 0.5 -0.1 1.33
0.24 -1.55 -2.95 -2.94 -3.3 -2.6 0.37 -2.66 -2.06 -0.69 -0.18 -1.31 1.81 1.71 -1.39 1.68
0.18 -0.68 -1.16 -1.54 -0.56 -0.13 0.64 -0.19 0.04 -0.06 0.38 -0.2 0.56 0.44 0.13 0.43
0.53 -1.06 -1.74 -2.2 -1.91 -1.09 0.63 -0.72 -0.59 0.07 0.71 -0.09 0.82 0.82 0.61 0.4
0.03 -0.22 -2.52 -2.3 -1.39 -1.51 0.98 -0.14 -0.77 -0.07 1.06 0.16 0.49 0.32 0.21 0.66
0.27 -0.34 -0.44 -0.56 -0.36 -0.19 0.55 -0.29 -0.2 -0.14 0.34 -0.62 0.42 -0.04 0.25 0.55
0.59 -0.3 -1.41 -2.44 -1.47 -0.94 1.01 0.24 -1.07 -1.9 1.12 -0.13 0.31 0.38 1.02 -0.65
0.66 -0.83 -0.48 -0.5 -0.15 -0.29 0.41 0.04 -0.06 -0.23 0.5 0.35 0.2 -0.29 -0.21 0.03
0.5 -0.93 -1.89 -2.61 -1.14 -0.75 0.9 -0.04 -0.36 -0.31 0.69 -0.12 0.39 0.29 0.41 0.81
0.16 -0.78 -0.78 -0.71 -0.52 -0.01 0.87 -0.24 0.02 0.06 0.58 -0.26 0.37 0.32 -0.78 0.31
0.23 -1.03 -5.49 -10.07 -0.41 -0.51 1.34 0.26 0.46 0.44 0.5 -0.78 0.52 -0.1 -1.08 0.65
0.16 -0.8 -0.64 -0.52 -0.1 0.21 0.81 -0.03 0.18 0.33 0.35 0.15 0.16 -0.36 -1.23 0.07
0.65 -1.02 -1.37 -1.21 -1.07 -1.05 1.31 0.14 -0.74 -1.11 1.33 -0.58 0.78 0.02 -1.51 0.34
0.52 -2.03 -1.78 -2.81 -1.6 -1.29 -0.79 -1.14 -3.51 -0.99 -0.02 -0.32 1.57 1.06 0.98 1.44
1.03 -0.9 -1.5 -1.75 -0.63 -0.89 0.84 0.45 -0.59 -0.36 0.51 0.22 0.27 0.27 -0.39 0.28
0.68 -0.63 -1.19 -1.29 -0.91 -0.83 0.81 0.11 -0.6 -0.59 0.82 0.42 -0.02 0.37 0.23 0.14
0.8 0.3 -0.58 -0.71 -0.44 -0.8 0.97 -0.1 -0.13 -0.1 0.1 0.28 -0.15 -0.45 -0.63 0.18
0.16 -0.48 -1.52 -1.17 -0.22 -0.22 0.85 0.16 0.05 -0.32 0.41 -0.53 0.77 0.13 -0.57 0.49
0.59 -0.81 -2.01 -2.16 -1.42 -1.53 0.38 -0.29 -0.53 -0.42 0.14 -0.95 0.77 1.04 1.25 0.5
0.77 -0.7 -0.52 -1.22 -0.83 -0.53 0.47 -0.34 -0.0 -0.12 0.38 -0.31 0.13 0.31 0.5 0.43
-0.06 -0.89 -0.73 -0.24 -0.74 -0.88 0.75 -0.19 -0.47 -0.97 1.17 -0.28 0.72 0.18 -1.3 0.88
1.07 - -1.61 -1.64 -1.11 -1.4 0.52 0.19 -1.26 -1.56 -0.08 -0.93 1.3 0.34 0.45 1.33
0.42 -1.38 -1.62 -1.65 -1.09 -0.39 0.67 0.16 -0.39 -0.12 0.25 -0.4 0.87 0.46 0.02 0.87
0.56 -0.66 -0.88 -1.13 -0.78 -0.35 0.42 -0.44 -0.5 -0.55 0.02 -0.4 0.58 0.74 0.78 0.49
0.23 -0.41 -1.05 -0.75 -0.55 -0.54 0.9 0.17 -0.04 -0.27 0.98 0.42 0.06 -0.32 -0.49 -0.04
0.45 -1.19 -1.17 -1.24 -1.29 -0.76 0.21 -0.69 -0.62 -0.62 0.25 -0.66 1.07 0.72 0.53 1.17
0.55 -0.31 -0.57 -0.08 0.05 -0.0 0.72 -0.02 0.16 -0.14 0.5 0.03 -0.34 -0.55 -0.95 -0.03
0.26 -0.16 -1.23 -2.24 -1.1 -1.07 1.06 -0.52 -0.31 -0.28 0.17 -0.06 0.24 0.7 0.88 0.24
-0.28 -0.27 -1.95 -0.72 -0.36 -0.52 0.83 0.25 -0.15 -0.36 0.36 -0.12 0.32 0.6 0.4 0.09
0.03 -0.7 -0.95 -1.52 -0.93 -0.69 0.69 0.15 -0.1 0.06 0.3 -0.16 0.3 0.31 0.91 0.22
0.44 -0.37 -0.77 -0.65 -0.36 -0.35 0.63 -0.18 0.1 -0.01 0.32 0.3 -0.05 0.2 0.15 -0.16
0.83 -0.39 -1.0 -1.42 -0.75 -0.18 0.64 -0.14 -0.2 0.06 0.16 -0.64 0.51 0.15 0.23 0.34
0.22 -1.55 -0.98 -1.37 -1.08 -0.8 0.56 0.01 -0.36 -0.21 0.32 -0.16 0.63 0.6 0.88 0.48
0.42 -0.56 -1.12 -0.8 -0.31 -0.49 0.82 0.06 0.26 0.11 0.4 -0.12 0.11 0.04 -0.48 0.35
0.2 -3.47 -1.17 -1.4 -0.44 -0.64 0.74 0.05 0.86 0.43 0.38 -0.6 0.37 0.08 -0.39 0.7
0.15 -1.28 -2.05 -1.6 -1.96 -1.3 0.53 0.16 -0.94 -0.99 0.72 0.35 0.86 0.93 0.49 0.69
0.12 -1.78 -1.5 -1.97 -1.3 -1.04 -0.05 -1.03 -0.8 -0.4 0.28 -0.28 1.15 1.02 0.61 1.33
0.1 -1.81 -1.14 -0.96 -0.86 -0.18 0.87 0.1 -0.18 -0.29 0.75 -0.13 0.85 0.16 -0.55 0.53
0.55 -4.49 -1.87 -3.28 -2.05 -1.54 -0.04 -0.34 -3.24 -3.81 -0.3 -0.97 1.57 1.42 1.45 0.91
0.23 -1.25 -1.12 -0.94 -0.65 -0.54 0.29 -0.15 -0.16 -0.26 0.1 -0.54 0.89 0.7 0.51 0.65
-1.4 -0.76 -3.73 -2.94 -2.43 -2.27 -0.07 -0.44 -1.09 -1.18 -1.23 -0.53 1.52 1.51 0.96 1.6
0.31 -2.63 -1.5 -1.54 -0.79 -1.39 0.85 -0.81 -0.64 0.18 0.58 -0.16 0.89 0.36 -0.11 1.23
0.45 -0.66 -2.42 -2.49 -0.71 -0.47 1.1 -0.54 -0.86 -0.55 0.9 -0.73 1.15 -0.11 -0.5 0.94
0.36 -0.7 -1.16 -1.52 -0.72 -0.47 0.7 -0.09 0.1 -0.23 0.28 -0.2 0.49 0.23 0.58 0.41
0.59 -1.25 -0.96 -1.47 -0.89 -0.32 0.48 -0.47 -0.3 -0.62 0.49 0.24 0.54 0.64 0.55 0.3
0.37 -0.09 -1.17 -1.56 -0.54 -0.53 1.23 0.41 0.21 -0.36 0.43 0.76 -0.43 -0.49 -0.27 -0.6
1.08 -1.49 -1.24 -0.95 -1.34 -0.68 0.44 -0.33 -1.14 -0.58 0.33 0.31 0.56 0.61 0.27 0.66
0.15 -0.3 -1.05 -1.58 -0.78 -0.88 0.42 -0.38 -0.55 0.04 0.47 0.03 0.46 0.61 0.64 0.54
0.32 -0.51 -1.87 -1.43 -0.84 -0.28 0.95 -0.05 -0.19 0.04 0.38 -0.28 0.62 0.17 -0.65 0.84
1.08 -1.58 -2.67 -2.34 -0.83 -0.49 0.71 -0.47 -0.17 -0.53 0.13 -0.56 0.65 0.37 0.51 0.95
0.62 -1.48 -1.15 -0.18 -0.4 0.06 1.37 0.43 0.05 -0.21 1.2 0.28 -1.22 -1.69 -2.3 -0.56
0.49 -1.08 -0.83 -1.27 -0.69 -0.23 0.56 -0.22 -0.61 -0.13 0.47 -0.6 0.51 0.55 0.39 0.62
0.53 -0.73 -2.75 -2.93 -1.49 -1.85 0.53 0.13 -0.73 -0.85 -0.22 0.04 1.25 0.78 -0.15 1.3
0.7 -1.17 -1.18 -1.94 -0.7 -0.42 0.4 -0.37 -0.83 -0.72 0.09 -0.46 0.42 0.84 1.17 0.53
0.39 -0.9 -1.71 -1.47 -1.41 -0.78 1.03 -0.15 0.17 -0.4 1.13 0.48 0.22 -0.11 -0.41 0.36
-0.41 -0.28 -1.3 -1.33 -0.56 -0.46 0.85 -0.32 0.02 -0.38 0.04 -0.26 1.14 -0.0 0.13 0.74
0.94 -0.97 -0.94 -0.97 -0.54 -0.38 0.84 0.1 -0.05 -0.15 0.39 -0.1 0.19 -0.18 -0.1 0.21
1.26 -2.94 -2.86 -2.07 -1.87 -2.27 0.76 0.01 -1.21 -1.4 0.51 -0.23 1.13 0.91 -0.5 1.03
0.55 -0.37 -0.9 -0.65 -1.09 -0.88 0.76 -0.28 0.05 -0.26 0.8 0.56 0.2 -0.02 -1.07 0.44
0.47 -1.39 -2.05 -2.59 -2.23 -1.6 0.49 -0.37 -0.93 -1.13 -0.39 -0.27 1.04 1.21 1.32 0.72
0.39 -1.13 -1.16 -1.61 -1.03 -0.26 0.69 -0.96 -0.28 0.11 0.58 -0.11 0.27 0.45 0.75 0.5
1.04 -0.32 -1.52 -1.45 -0.98 -0.48 0.41 0.02 -0.7 -1.05 0.31 -0.34 0.81 0.34 -0.29 0.92
0.85 -1.86 -1.62 -0.93 -1.46 -1.96 0.76 -0.35 -0.55 -0.6 0.27 -0.03 1.01 0.87 0.12 0.6
0.41 -0.7 -1.05 -1.15 -0.55 -0.59 0.66 -0.24 0.02 0.06 0.57 -0.55 0.47 0.4 0.21 0.35
0.76 -0.98 -0.65 -1.33 -0.74 -0.49 0.9 0.02 -0.85 -0.31 0.6 -0.54 0.33 0.17 0.43 0.35
0.36 -0.94 -0.82 -1.0 -1.02 -0.7 -0.19 -0.53 -0.43 -1.05 0.3 -0.33 0.85 0.92 0.78 0.85
0.49 -0.35 -1.39 -2.06 -0.96 -0.55 0.5 -0.44 -0.66 -0.64 -0.46 -0.49 0.54 0.94 1.17 0.6
0.16 -0.68 -1.1 -1.26 -0.28 -0.75 1.28 -0.24 0.65 0.41 0.62 0.75 -0.95 -0.65 -0.24 -0.79
0.15 0.22 -1.16 -0.62 -0.82 -0.7 0.61 -0.23 -0.19 0.1 0.59 0.05 0.56 0.14 -0.46 0.34
0.39 -1.31 -1.35 -1.48 -1.14 -0.85 0.8 -0.43 -1.23 -0.11 0.49 -1.01 0.99 0.88 0.51 0.62
-0.27 -0.49 -1.47 -1.89 -0.64 -1.15 0.37 0.09 0.53 -0.23 -0.09 -0.06 0.98 0.98 0.19 0.13
0.15 -0.98 -0.97 -0.82 -1.0 -0.9 -0.01 -0.68 -0.96 -0.65 -0.18 -0.59 1.07 1.15 0.72 1.0
0.76 -0.95 -2.11 -3.59 -1.69 -1.53 0.7 -0.68 -0.9 -0.31 0.32 -0.26 0.56 1.02 1.21 0.39
0.66 0.08 -1.33 -1.13 -0.96 -0.46 1.22 -0.11 0.02 0.15 0.84 0.37 -0.76 -0.63 -0.79 -0.01
-1.18 - - - - - 0.3 -1.53 - - 0.17 - 2.33 0.82 2.3 0.2
0.77 -0.74 -0.7 -0.85 -0.44 -0.38 0.54 -0.6 -0.17 0.04 0.75 0.33 -0.02 0.02 0.13 -0.07
0.38 -0.73 -1.61 -1.94 -0.97 -0.49 0.56 -0.59 -0.59 -0.33 0.05 -0.29 0.84 0.89 0.51 0.82
0.41 -1.73 -2.76 -2.08 -1.54 -1.35 0.07 -0.91 -0.79 -1.13 0.03 -1.63 1.25 0.92 -0.06 2.02
-0.48 -0.36 -2.01 -2.29 -1.87 -1.92 0.75 0.03 -0.89 -1.15 -0.54 -0.01 0.96 1.07 1.2 0.85
0.31 0.23 -0.98 -1.35 -0.6 -0.62 0.86 -0.22 -0.28 -0.03 0.7 0.38 -0.05 0.07 -0.16 0.08
0.19 0.11 -1.08 -0.89 -0.62 -0.46 0.9 0.03 -0.48 -0.6 0.65 -0.03 0.3 0.14 0.09 0.24
0.13 -1.0 -1.39 -1.91 -0.9 -0.67 0.52 -0.42 -0.56 -0.66 0.55 0.07 0.96 0.64 0.57 0.67
-0.77 -2.04 -2.29 -2.79 -1.58 -1.65 -0.06 -0.75 -0.57 -1.6 -0.67 -0.51 1.55 1.11 0.51 1.91
-0.11 -1.83 -2.64 -2.6 -2.14 -1.65 -0.54 -1.23 -1.29 -1.47 -0.66 -0.74 1.73 1.4 1.27 1.29
0.7 -0.44 -1.55 -1.64 -0.69 -0.6 0.29 -0.05 -0.64 -0.65 -0.29 -0.31 0.82 0.55 0.55 0.94
0.16 -0.39 -0.74 -0.45 -0.21 0.11 1.07 -0.17 0.06 0.1 0.73 0.2 -0.08 -0.74 -1.44 0.03
0.47 -1.23 -1.17 -1.1 -0.88 -1.03 0.54 -0.18 -0.42 -0.17 0.14 0.03 0.6 0.71 0.59 0.58
-1.34 -0.92 -1.81 -1.71 -2.17 -1.88 0.03 -0.65 -0.91 -1.27 -0.92 -0.48 1.66 1.32 0.95 1.35
0.31 -1.36 -0.61 -0.65 -0.49 -0.02 0.67 -0.08 -0.06 -0.3 0.49 -0.05 0.47 0.4 0.14 -0.15
0.92 -2.04 -1.21 -2.04 -1.1 -0.99 0.19 -0.41 -1.05 -0.56 0.17 -0.23 0.79 0.96 0.84 0.77
0.77 -0.76 -1.23 -1.78 -0.79 -0.35 0.82 0.36 -0.44 -0.69 0.48 0.35 0.27 0.12 0.06 0.27
0.47 0.06 -0.51 -0.73 -0.31 -0.51 0.6 -0.87 -0.3 -0.29 -0.21 -0.26 0.24 0.3 0.65 0.47
0.53 -1.41 -1.75 -2.27 -0.79 -0.6 0.22 -0.51 -0.9 -0.28 0.5 -0.51 0.94 0.93 0.76 0.67
-0.05 -0.54 -1.25 -1.42 -0.52 -0.18 0.53 0.17 0.18 -0.27 0.23 -0.39 0.72 0.3 0.19 0.58
0.71 -0.67 -1.06 -1.33 -1.24 -0.49 0.5 -0.35 -0.71 -0.31 0.18 -0.57 0.31 0.78 0.63 0.84
0.04 -2.46 -1.54 -2.02 -0.91 -0.4 0.62 -0.26 0.05 -0.27 0.17 -0.65 0.96 0.41 0.51 1.14

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.