Heatmap: Cluster_118 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - -2.92 1.48 -1.63 3.21 1.47 - -0.45 - -
- - 0.83 - - - 0.15 - - - - - - - 3.71 -
- 3.93 - - - - - - - - - - -2.34 -2.44 -1.37 -
-2.8 - 0.64 -0.16 1.98 -1.8 0.21 -2.14 1.75 0.61 -0.01 0.83 - -5.29 -3.21 -
-6.05 - 0.07 0.45 1.06 -2.15 0.74 1.37 - - 0.78 2.35 -4.37 - - -2.91
-3.11 -3.85 0.98 2.84 1.18 0.71 -0.43 - - -1.72 0.31 -1.79 - -2.52 - -
0.87 2.57 - - -0.19 - - - - - - - - 0.5 2.57 -
3.9 -7.09 - - - - - - -0.15 -3.36 -5.91 - - -5.75 -3.68 -
-5.09 1.55 -3.31 -6.3 -1.91 -6.66 -4.3 3.51 -1.06 -1.0 -4.38 -4.07 - - -3.74 -3.84
- 2.62 1.58 1.91 0.71 0.55 - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - 4.0 -
-3.83 -6.16 0.94 1.38 1.29 2.18 -1.34 -3.71 -1.53 -1.18 0.72 0.6 - - - -
- -4.4 -2.31 -1.57 0.56 -0.03 2.23 2.76 - - -1.66 -2.35 - -1.07 -1.0 -
- - - - 3.28 2.48 -0.51 - - - - - - - - -
-9.27 -5.32 -8.5 -6.58 -5.04 -6.95 -3.31 2.49 2.55 1.6 -0.39 -0.93 - - -5.61 -
- - 0.61 -0.04 2.3 2.18 -0.21 -8.3 -4.12 -5.06 0.88 0.11 - -4.87 -2.8 -
- - - - - - -0.63 -3.64 0.66 0.71 2.33 2.81 - - - -
- - 0.94 0.37 1.99 1.35 1.49 -0.24 - - -0.09 0.71 - -4.4 - -
-4.36 -2.5 -3.38 -0.08 -1.92 2.14 -5.59 -4.19 3.21 -0.96 -2.49 -3.78 - - - -
- 3.16 - -1.25 - 0.7 1.06 - - -0.94 - - 0.32 0.23 - -
- - 1.87 2.12 1.02 -0.18 1.94 -4.36 - - -1.48 -0.23 - - - -
-6.35 -3.78 2.69 1.14 -0.67 1.88 -3.9 -1.84 -2.65 -0.52 -0.42 0.01 - - - -
-2.92 1.56 1.51 1.27 0.78 1.64 -4.09 -0.98 -0.36 -0.33 -1.67 -1.49 - -7.07 - -
-7.19 - 1.45 1.25 2.3 1.89 0.62 -4.87 - - -4.71 -1.17 - - -2.49 -
- 3.77 -0.03 - 0.1 - -2.7 -3.09 - - - - - - - -
- - - - - - -4.27 4.0 - - - - - - - -
3.11 1.03 - - - - - - - - - - - 2.42 - -
2.2 -2.68 1.41 0.34 -0.04 -1.16 -3.12 -3.52 1.52 -2.23 -2.36 0.69 - - -0.29 -
-1.16 - 1.78 2.26 0.75 -1.43 -0.06 1.39 -0.83 - - 0.16 - - - -
1.41 - -0.61 -0.27 1.53 - - 0.99 - - - -0.04 - 0.21 2.28 -
- - 1.41 3.25 1.92 -3.98 - - - - - - - - - -
- - -0.55 -0.43 0.69 0.29 - -1.33 1.98 0.68 2.37 -0.66 - - - -
-6.65 - -5.87 - -3.15 - -5.22 0.8 -2.98 -3.07 2.88 2.7 - - - -
-7.28 3.67 -4.91 -4.57 -7.36 - -5.16 -0.5 0.87 -0.69 - -6.93 - - - -
-5.04 -5.24 2.1 2.21 -0.05 2.35 - - -3.73 -3.31 -0.86 -2.02 - - - -
- 3.81 1.0 - - - - - - - - - - - - -
-3.49 2.83 1.77 0.68 0.59 -0.23 -2.58 -2.63 - - -1.47 -5.16 - - -0.83 -2.92
- - - - - - - - - - 3.48 2.27 - - - -
-1.27 -1.03 1.13 0.47 2.48 1.69 - - - - - - - - 1.43 -
-0.23 -0.3 -2.36 - - -1.07 -1.03 -2.31 1.67 1.08 2.39 0.52 - - - 0.02
- -2.49 1.29 3.14 0.98 -0.49 -0.97 -2.13 -1.87 - -2.78 -1.3 - - - -1.68
- - -0.14 -0.79 1.56 2.16 - -2.82 - 0.53 - - - 1.05 1.78 -
- - 1.79 2.12 1.92 0.75 0.7 0.14 - - - - - - - -
-4.2 - 3.11 1.42 1.32 0.38 -5.08 -2.17 -3.17 -3.78 -3.26 -2.37 - -5.92 -3.85 -4.94
- - -0.52 -1.18 - 3.45 -1.19 -0.1 - - - - 0.39 0.3 - -
0.37 - - -1.43 2.95 2.73 - - - - - - - - - -
- - 0.51 - 2.22 2.42 -0.65 -4.96 - - - -0.15 - - 1.59 -
-4.74 -3.2 1.19 1.51 3.01 0.64 -0.56 -3.96 -4.47 -5.85 -2.74 -2.56 - - -8.4 -
- -1.68 2.13 1.57 -0.64 0.85 -3.31 0.37 0.18 1.63 -4.43 -2.28 -5.18 - - -
- -6.93 1.06 1.56 2.2 2.26 -1.92 -5.74 -7.63 -5.25 -0.91 -0.48 - -8.38 -6.31 -
- - - - - - - - - - - - - 1.62 3.69 -
- - - - - - - 3.85 -1.69 - - -0.12 - -1.44 - -
- - - - - - - 3.37 2.5 - - - - - - -
-2.05 2.02 - -4.74 -1.24 -0.4 -1.93 3.3 - -2.85 - - - - -2.18 -
-6.48 - 2.1 1.46 1.89 1.68 -5.28 -7.77 - - -1.24 0.61 - - -4.23 -
- - - - - - - 0.05 0.83 - - - - - 3.72 -
-1.28 - - - - - - - - - - - - - 3.96 -
- - - - - 1.85 - - - - 2.56 - - 2.7 - -
3.9 0.14 - - - - - - - - - - - - - -
- - - - - - - - - - 2.96 - - 3.04 - -
- - - - 0.62 - - - 1.93 3.41 - - - - - -
1.43 -2.46 1.39 1.3 2.16 1.25 -1.26 -7.87 -4.99 -5.34 -2.14 -1.17 - - -4.28 -
-4.51 -3.81 - - - - -4.55 0.39 2.55 1.9 - -5.53 -1.43 -0.23 1.37 0.16
- 3.61 - - - - - - - - - - - 1.92 - -
- - - - - - - 0.91 - - 1.06 - - 1.21 3.28 -
-7.74 -5.22 -1.53 -0.83 -1.69 -0.94 -0.41 -1.91 1.64 2.29 1.39 1.37 -7.36 -8.45 - -7.48
- - 1.36 2.14 1.35 1.56 1.32 - - - - 0.04 - - - -
-3.31 -0.61 0.42 0.02 -1.78 1.18 1.79 -1.76 1.34 -0.85 0.36 0.67 - - - -0.7
- - - -0.63 - 1.01 - - - - - - - 0.84 3.53 -
-1.39 1.9 1.02 1.4 0.89 0.36 -1.43 -2.37 0.46 0.48 -1.26 -1.58 - - - -
- - - - - - - - - - - - - 1.62 3.69 -
-0.58 - 2.03 - 1.67 1.51 - - - - -0.11 - - - 2.11 -
-8.21 -5.69 0.94 1.69 1.02 3.06 -4.51 -4.78 -9.43 -4.79 -2.39 -2.67 -9.09 -10.19 -8.11 -
- - 1.95 2.61 0.67 1.94 -3.24 -5.09 - - -3.64 -1.87 - - -3.0 -
- - - - - 1.53 - - - - - 1.13 - - 3.45 -
2.68 3.25 -4.89 - - -5.9 - - - - - - - - - -
- - - -3.13 -2.32 0.59 -0.2 0.24 1.27 1.97 1.66 0.67 - - 0.08 -
-0.96 -0.03 0.49 -0.6 - - 1.27 -1.58 0.37 -1.89 0.95 1.21 0.99 - 0.38 -0.72
- -4.73 0.36 0.86 2.13 0.76 1.78 -2.66 -0.84 0.07 -0.16 -0.51 - - - -
-1.05 - - - -0.13 2.02 -0.94 - - - 1.4 0.29 - - 2.62 -
- - - - - - - - - - - - - - - -
1.02 - - - 2.95 1.78 - 1.49 - - - - - - - -
- -3.91 1.35 1.17 2.16 2.26 -0.4 -2.02 -4.14 -4.09 -2.04 -1.15 - -3.96 - -
-3.25 -4.56 0.86 0.19 -0.23 2.22 -1.52 -0.32 0.13 -0.17 1.15 1.01 - -5.99 - -
-5.66 -1.82 - - -3.75 - -5.55 3.43 1.52 0.65 - -3.32 - -4.06 -1.99 -
- - - - - - - - - - - - - - - -
- - - 0.97 - -0.4 - 0.87 - - - - - - 3.52 -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - 4.0 -
-10.61 -9.62 0.42 1.2 -0.07 -0.5 2.87 -4.28 -3.33 -5.69 0.34 0.95 - - -6.93 -
4.0 - - - - - - - - - - - - - - -
- - -2.99 -2.07 -4.55 -6.73 -6.04 -4.35 -0.14 1.13 3.2 1.7 - - - -
- - - - - - - - - - - - - - - -
- - 0.4 2.63 2.14 -1.64 1.87 -4.66 - - - -4.31 - - - -5.04
- -5.55 1.58 1.31 2.27 1.32 1.03 -3.28 - - -1.86 -0.57 - - -3.1 -
-6.2 - -0.49 -2.07 1.12 2.83 2.05 -4.6 - - -0.21 -0.51 - - - -
- - - - - - -4.8 3.99 - - -3.66 -4.98 - - - -
- - - - - - - - - - - - - - - -
- - 2.47 2.48 2.25 - - - - - - - - -3.69 - -3.72
-3.41 -5.98 - -4.02 -3.65 3.13 - - 2.08 -0.07 0.65 -2.2 - -4.55 - -
- 3.17 - - - - - - - - - - 2.8 - - -
- 2.82 -0.69 0.72 -3.06 -2.81 0.34 -5.84 - - 2.07 -0.13 - - - -
0.86 -0.65 1.27 1.94 1.91 1.38 - - -4.98 -2.92 -1.08 -1.82 - - - -
- - 0.08 2.15 2.0 -1.4 2.48 -4.88 - - -2.7 -1.56 - -6.76 - -
- - 1.2 0.73 0.1 2.14 -1.28 -1.27 - - 2.39 -1.04 - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - - - - - 4.0 -
- -2.73 -0.31 1.92 2.7 0.19 -3.86 -0.34 -0.74 -0.05 -1.79 -0.63 - - -1.89 -
- - 1.14 - -0.33 1.13 - - - - - - - - 3.43 -
-6.93 - 0.9 0.63 1.82 2.66 1.27 -7.05 -7.16 - -2.74 -2.64 - - - -
0.1 - - - - 3.9 - - - - - - - - - -
- -2.55 - - 3.48 1.82 - - - - - - - 0.21 - -
- - 0.69 1.83 2.13 0.66 - -2.99 - - - - - -1.52 1.59 0.47
-3.53 -6.31 2.36 2.33 0.12 1.63 -0.36 - - - -2.71 -0.68 - - - -
-9.8 -6.74 2.52 2.36 1.34 0.14 -1.35 -4.32 - -7.37 -1.23 -0.77 - - - -6.22
- - -0.81 -0.47 - -0.84 - -2.49 1.79 0.84 1.88 -0.23 - - 2.07 -
- - 0.31 1.27 2.47 2.45 -0.96 -3.52 -2.75 -2.69 -2.17 -3.5 - - -2.74 -
- - 2.5 2.25 0.69 1.07 0.38 -7.28 - - -3.6 -1.04 - - - -
-0.17 - - - 0.82 - 0.02 1.02 - - 1.39 2.28 - 1.5 - -
- 3.88 - - - - - - - - - - - - 0.41 -
- - -0.04 0.29 2.2 - 3.13 -4.43 -2.79 - - -1.8 - - - -
- 2.94 - - 3.06 - - - - - - - - - - -
- - -0.98 -0.01 0.09 -0.37 - -2.26 2.48 2.08 - - -0.1 - - 0.78
-6.93 2.66 -3.38 -3.33 -1.44 -0.85 -2.51 -2.98 1.97 1.48 0.05 -0.93 - - - -
-2.44 -7.23 1.47 1.38 1.72 1.33 1.02 -1.6 -3.73 -3.42 0.01 0.14 - - - -6.5
-0.05 - - - - - - - - - - - - - 3.91 -
- - -1.39 -1.84 0.44 0.99 1.21 -1.85 - - 2.59 1.75 - - - -
- - -2.16 - -1.03 0.13 - -4.82 - - 2.83 2.73 - -1.35 - -
1.99 - - 0.98 - -0.39 - - 1.81 - - - - - 2.53 -
2.14 0.98 - - -0.95 - - 2.94 - -0.46 - -0.53 - - - -
-9.19 - -1.66 -2.2 -3.96 -2.72 1.75 -0.86 -1.83 -4.47 2.88 1.86 - - -5.53 -
- - 1.36 2.79 1.9 1.27 -6.34 -6.17 - - -2.18 -3.09 - - - -
-7.35 -2.72 -0.73 -1.06 1.09 0.42 2.89 -4.42 - - 1.28 0.48 - - - -
- - - - - - - 4.0 - - - - - - - -
- 3.99 -5.78 -6.03 -5.91 -6.09 - -8.43 - - - - - -6.54 -4.47 -6.57
-4.99 -2.03 -0.42 0.18 2.19 1.72 0.58 0.8 -0.63 -0.59 -0.35 -0.76 - -6.76 -4.95 -7.17
-8.16 -9.64 2.64 2.13 1.96 0.55 -8.69 -7.75 -8.35 -11.1 -7.89 -7.47 -9.8 -9.9 -8.83 -9.49
- - - - - - - 4.0 - - - - - - - -
1.34 3.17 2.15 - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-7.45 - -0.18 -1.18 1.9 1.45 1.52 2.18 - - -2.01 -0.86 - - - -
-0.04 - 1.76 - - 1.73 -0.91 - - - - - - 0.58 2.65 -
- - - - - - - - - - - - - - 4.0 -
-5.64 - 1.01 0.71 2.23 0.82 -1.72 -2.82 -0.6 -1.92 1.34 0.34 - -3.94 -0.95 -3.05
- -6.85 2.17 2.34 1.2 -0.1 -1.62 -6.14 - -5.66 0.34 0.53 - - -3.41 -
-4.06 -9.13 1.05 0.84 1.44 1.76 1.03 1.55 -8.03 -5.38 -2.47 -0.42 -6.68 - -5.71 -
- - - - - - - - - - - - - 4.0 - -
-6.93 -4.83 1.55 1.51 2.5 0.23 0.52 -0.97 -2.1 -0.96 -1.49 -1.94 - -5.33 - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-2.82 - -3.75 -3.84 -3.03 -1.96 -8.42 0.72 2.89 1.65 1.3 -0.72 - - -3.86 -
-6.48 -10.75 1.83 1.76 2.29 1.86 -3.75 -3.57 -3.49 -3.47 -3.47 -3.28 - - - -
- - 0.47 1.03 1.26 2.42 -2.53 -2.44 -1.7 -1.9 0.67 1.16 - -4.04 - -
- - 0.5 -0.02 0.45 1.38 1.41 1.64 -2.09 -2.03 0.81 - - - - 0.7
- - -2.42 1.62 0.95 0.87 2.87 -6.09 - - -1.15 -0.84 - -1.61 - -1.64
- - - - - - - - - - - - 4.0 - - -
- - 1.08 - 2.17 0.2 0.41 2.06 -2.52 - -0.1 0.28 -1.18 - - -
0.19 - - - - 0.97 - -0.07 2.59 - - -0.01 - - 2.31 -
- 3.93 -2.63 -1.91 -3.72 -6.36 -4.08 -6.38 -3.22 -3.66 -7.4 -6.5 - - - -7.85
- - - - - - - - - - - - - - - -
- - - - - - 0.36 - - - - - 2.94 - - 2.82
-1.95 - - - 2.58 3.29 - - - - - - - - - -
-4.89 - 1.29 0.0 2.0 2.29 1.37 -1.87 - - -2.02 -1.77 - -2.73 -3.24 -
- - -1.79 -2.45 -0.54 -3.41 - - - - 2.94 2.82 - - - -
- - - - -3.2 - - 2.31 2.2 1.21 -0.34 0.82 - - 0.56 -
- -4.3 -0.47 -1.43 0.75 0.81 1.89 -1.15 -1.7 -2.28 2.24 0.75 -3.17 -3.68 - -2.71
- -5.3 -0.98 -0.9 2.02 -0.29 -0.52 2.6 0.27 1.0 -6.55 -3.27 - - - -
- - - - - - - - - - - - 2.2 1.69 2.6 1.08
- 3.99 - - - - -8.36 - - - -4.86 -8.13 - - -5.8 -
- 2.88 - - - - - - - - 2.09 0.99 - 1.24 - -
-4.56 1.35 -0.7 -1.79 -0.91 0.4 -2.26 0.78 1.64 2.07 -1.3 -3.73 -3.37 -1.47 -1.4 -3.5
- - -1.94 - - - -2.61 2.6 -0.36 - - - -0.02 - 2.95 -
- - - - 3.1 - 2.89 - - - - - - - - -
-7.31 - -2.07 -1.15 -0.64 2.32 -1.5 -1.78 1.09 1.87 1.12 0.08 - - - -
- - - - - - - 4.0 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.