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Heatmap: Cluster_42 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - 4.0 - - - - - - - -
- - - - - - - - - - - - - - - -
- - 0.79 0.86 0.98 -0.05 2.58 -3.98 - - 0.33 1.14 - - - -
- - - - - - - 2.11 - - 2.48 2.61 - - - -
- - - - - - - - - - - - - - - -
- - 1.72 - - 2.69 - -0.95 - - - - - 2.53 - -
- - - - - - -0.23 3.92 - - - - - - - -
- - 0.66 0.69 1.81 -0.47 3.07 -2.68 - - -4.68 - - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- - - - - - - - - - 3.05 2.95 - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
3.78 -3.91 -0.85 -0.43 -1.11 -1.97 - - - - -3.27 -4.37 - - - -
- - - - - - - - - - - - - - - -
- - 0.85 1.19 - - 2.84 -3.42 - - 0.96 1.44 - - - -
- - - 4.0 - - - - - - - - - - - -
-5.86 - 0.89 1.74 2.67 1.66 -0.61 -4.88 -2.12 -4.38 -2.54 -3.13 - - - -
- - - - - - - - - - - - - - - -
- 0.1 - - - - 3.31 - - - 0.97 1.6 - - - -
4.0 - - - - - - - - - - - - - - -
- - - - 0.88 0.75 3.41 0.88 - - - - - - - -
- 2.48 -3.15 -2.08 -1.17 -2.54 2.74 -4.65 - -1.43 -0.16 0.55 - - - -
- - - - - - - - 2.58 2.63 1.94 - - - - -
0.45 0.08 -2.32 -2.19 -0.82 -0.77 - - 1.32 1.24 1.93 1.73 - - - -
- - - - - - - - - - - - - - - -
- - 1.28 1.35 0.94 1.29 2.44 -5.56 - - -1.07 -0.46 - - - -
- - - - - - - 4.0 - - - - - - - -
- 0.16 -3.69 - - - - - 1.23 1.31 2.46 2.16 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 3.24 2.35 0.53 - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 0.44 - - - - - - - 3.11 2.59 - - - -
-4.48 3.99 -3.59 - - - - - - - - - - - - -
- 1.14 - - - - - 3.55 0.75 -1.2 - - - - - -
- - 2.62 1.96 -2.26 0.17 1.75 -3.05 - - - 0.2 - - - -
- - - - - - - - - - - - - - - -
- 3.96 -5.59 -3.08 -4.48 -2.36 -6.27 -6.71 - - - -4.99 - - - -
- - -2.68 -0.3 -4.75 - 2.75 1.39 0.79 1.85 -4.21 -1.93 - - - -
- - - 2.86 - - - - 3.13 - - - - - - -
- - - - - - - - - - - - - - - -
- - - 4.0 - - - - - - - - - - - -
- - 2.25 2.18 1.15 1.82 -5.89 -12.13 - - -1.41 -0.84 - - - -
- - - - - - - 4.0 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
2.65 1.76 - - 2.07 1.12 - - - - - - - - - -
-0.1 3.91 -5.55 -5.06 -9.46 -6.23 - - - -6.04 - -8.98 - - - -
- - 2.87 2.47 1.67 - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.