Heatmap: Cluster_36 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.68 -6.43 -4.44 -4.11 -0.08 -0.49 -4.05 -0.95 0.17 -0.92 2.51 2.65 - - - -
- - -0.74 - 1.5 1.1 0.32 1.88 -0.15 -1.68 0.94 -0.16 - - 0.55 -
-0.29 3.28 - 2.45 - - - - - - - - - - - -
- 3.98 - - - - - - - - - - - - -2.47 -
-5.73 - -2.29 -3.65 1.2 1.18 -2.22 -4.11 -2.14 -2.54 2.47 2.29 - -4.8 - -
- - - - - - - - - - - - - 1.62 3.69 -
- - -2.1 -1.48 1.02 0.05 3.04 -4.93 -6.28 - 1.09 0.91 - - -3.97 -5.07
-2.76 - 0.36 0.65 -1.03 -2.62 -0.98 0.76 0.75 2.92 -1.34 -1.03 - - - -
-0.61 3.88 - -1.83 - -3.42 - -7.64 -4.38 -4.32 - - -3.07 - - -
-3.73 -0.91 1.88 1.81 2.57 0.62 -0.76 -3.24 - - - -3.91 - - - -
-2.1 3.91 - - - - - -6.15 -2.36 -1.3 - - -2.59 - - -
2.98 - 2.91 - - - - -0.74 - - - - - - - -
- 0.36 - - - - - - -0.87 - 3.03 2.58 - - - -
3.03 2.93 -8.16 -7.83 -6.45 -6.61 - -6.82 -3.68 -3.94 - - - - -5.28 -
-4.73 -3.08 0.67 1.44 0.76 2.87 0.32 -0.42 -4.52 -4.2 -1.98 -2.38 - - - -
- 4.0 -8.88 - - -9.91 - -9.53 -9.31 - - - -7.97 - - -
- -3.84 0.83 -0.03 1.68 3.07 -2.35 - -3.34 - 0.22 -3.35 - - - -
- - 0.0 2.21 2.46 0.97 1.45 -2.24 - - - - - - - -
1.31 - - - - - - - 3.33 1.8 - - - - - -
- 2.14 - - 2.4 0.65 - - - - - 2.25 - - - -
-8.71 -7.29 1.45 1.46 1.8 0.31 0.87 -0.92 -4.86 -3.24 0.71 0.73 - - - -8.16
-3.61 - 1.59 0.03 1.92 0.81 1.09 0.5 -3.87 -2.81 -0.53 0.85 -3.52 - - -
- - -0.04 0.36 2.14 2.02 1.59 -1.22 - - -0.83 -0.35 - - -1.61 -2.71
- -0.43 1.11 1.8 2.14 0.99 1.19 -4.29 -6.78 -6.72 -2.29 -0.64 - - - -
-0.68 2.57 - -0.56 - 1.07 - 2.21 - - - - 1.02 - - -
- 3.8 -3.13 -2.22 -1.0 -1.33 - - - - - - - - -0.24 -
- 4.0 - - - - - - - - - - - - - -
- - 1.15 0.91 2.01 -0.31 -5.39 -5.09 -1.76 -5.39 1.21 2.12 - - -5.29 -
1.27 1.53 - - 0.85 -0.32 - - 0.28 1.34 - - - 0.55 - 1.52
-1.19 - -0.41 0.77 2.26 2.35 0.18 -0.43 - - - -2.18 - - 0.16 -
- - - - - - - - - - - - - - - -
-1.98 1.08 1.4 - - - 1.31 0.07 0.97 1.66 -0.52 - 0.73 - - -
-2.13 3.87 - - - - - - - - -0.7 - -1.03 - - -
3.0 - - - - - - - - - - - - 3.0 - -
3.97 - - - - - - -5.34 -2.44 -3.38 - - - - - -
- - - - - - - - - - - - - - - -
-1.57 - - - - - - 3.97 - - - - - - - -
1.59 - - - - - - - - - - - - - 3.7 -
3.38 2.36 - - - - - - -3.58 - -2.49 -3.59 - -3.37 - -
-3.23 -2.78 -2.58 -0.57 -1.69 -1.85 1.14 -1.23 -0.94 2.51 1.26 1.62 - - - -
- - 0.4 0.52 2.03 1.03 1.89 -4.67 -4.91 -4.12 0.61 0.72 - - -3.18 -
- - - - - - - - - - - - - - - -
- - - - - - 1.42 1.68 2.52 2.13 - - - - - -
-2.79 1.1 0.62 1.76 1.07 0.91 -1.64 -1.92 - -1.32 1.41 0.19 - - - -
-3.27 - 1.89 2.33 1.95 0.91 -1.51 -5.25 -6.4 -5.89 -0.96 -1.1 - -9.78 -7.13 -
- 0.41 - 2.17 0.52 - 2.14 0.44 - - - 0.43 0.72 - - -
-2.61 1.61 2.19 1.96 0.22 0.46 -0.76 -2.98 -1.95 -2.46 -1.7 -1.54 - - - -
- - 1.96 2.53 - 1.36 -0.3 - - - - 1.56 - - - -
-6.06 - 2.12 1.95 1.1 2.07 -5.57 -4.35 -4.73 -4.66 -0.78 -0.56 - -9.17 - -
-2.58 -0.75 -0.21 -1.46 -1.66 -1.83 -0.88 -2.12 2.37 2.3 -1.12 - 0.12 - - -0.0
- -4.52 -0.64 1.18 3.51 -2.83 - - -4.19 -4.13 -1.29 -0.03 - - - -
- - 4.0 - - - - - - - - - - - - -
3.99 -3.16 - - - - - - - - - - - - - -
2.41 3.42 - - - - - - - - - - - - - -
- - -1.01 -0.42 -1.44 1.58 2.49 -2.09 -5.37 -2.22 1.39 1.33 - - -2.47 -
-1.98 - - - - - -0.85 -2.25 - - 3.19 2.55 - - - -
-2.17 -6.68 1.08 1.45 1.76 0.44 0.22 -0.79 0.92 0.15 -1.59 0.03 - -6.95 -3.88 -5.98
-2.21 -1.76 2.06 0.82 - 3.13 -0.64 - - - -2.65 - - - - -
-4.35 -2.19 -0.04 -1.16 -0.97 -0.94 -1.7 0.59 2.47 2.03 -0.5 0.11 - -7.13 -5.06 -
-4.01 -2.51 -5.68 -4.36 1.86 0.71 -3.15 2.89 -5.15 -5.08 0.83 0.08 - - - -
0.23 - - - - - - - - - - - - - 3.89 -
- 0.47 - - - - - 1.4 2.38 2.43 0.48 - - - - -
- -4.77 2.43 2.48 1.57 0.82 -6.79 -6.17 -9.57 -8.19 -3.55 -2.85 -9.25 -9.35 -7.28 -
1.61 -0.36 - - 2.76 2.37 - - - - - - - -2.28 - -
1.9 - - - - - - - - - - - - 3.62 - -
3.65 0.35 -2.84 -2.51 -1.98 -1.87 - 0.3 - - - -3.86 - - - -
- 3.98 -5.91 -6.58 - - -3.05 -7.53 -6.34 - -5.24 - - - - -
- - 1.88 0.63 - 3.43 - - - - - - - - - -
-0.07 - 1.78 2.71 - 2.34 - - - - - - - - - -
3.96 -2.75 - - -3.53 - -4.32 - - -2.98 - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-8.79 4.0 -11.69 -12.53 -9.38 -14.89 - -11.36 - - - -12.7 -12.95 - -11.98 -
- - - -2.95 -3.15 - -1.37 -1.12 0.61 0.81 2.84 2.03 -1.37 - - -
- - - - - 2.61 - - - - 3.31 - - - - -
-0.19 - 1.84 -0.63 0.16 0.59 -0.05 - -0.39 - -0.29 - 0.95 - 1.92 -
-6.03 2.05 -0.55 -0.95 -1.74 -0.8 -2.07 -2.85 -0.74 -1.45 2.85 0.29 - -7.63 - -
2.45 - - - 3.4 - - - - - - - - - - -
-7.16 -5.91 2.44 2.13 1.12 1.04 -3.8 -5.69 -2.9 -3.6 -0.6 -0.09 - - -5.05 -
-9.03 0.89 0.77 0.82 0.02 2.36 -0.45 0.21 -2.07 -3.04 0.14 0.22 -7.34 -7.43 - -7.46
-1.82 - 0.98 1.64 - 3.41 - - - - - - - - - -
- -4.87 -2.84 -6.31 -0.81 1.1 -4.51 1.26 1.77 1.24 0.34 1.84 - -5.83 - -4.85
-9.25 - -1.04 -0.9 1.81 2.14 2.68 -5.05 - - -2.33 -1.23 - - - -
- -0.02 - - - - 0.64 0.25 1.28 2.34 - - - 2.25 - -
- - 1.52 1.39 2.03 1.72 0.12 -3.57 -2.14 -2.66 -0.67 -0.08 - - -5.98 -
- 3.96 -2.93 -2.73 -4.19 -5.5 -6.29 - - - -5.8 -5.91 - - - -
- - - -3.82 -3.34 -1.65 -3.44 -2.97 1.33 2.65 1.87 1.47 - - -3.58 -
- - - - - 2.28 - - 1.3 - - - - 1.55 - 2.52
3.05 -1.82 -2.08 -1.21 -0.21 -0.82 1.41 0.74 - - -2.99 -0.22 - - - -
- - - - - - - - - - - - 2.43 - 3.41 -
2.94 3.06 - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- -9.5 -1.51 -1.32 -2.62 -0.83 -1.38 -0.84 1.78 1.82 2.18 1.02 -6.5 -6.6 -6.59 -6.62
- - 1.37 -0.21 0.76 2.07 2.27 -2.49 - - -2.14 0.52 - - - -
-6.36 - -1.22 -0.21 -1.42 -0.72 3.27 -2.04 - - 1.28 0.31 - - -2.66 -
- - -3.14 -1.44 -0.42 -0.43 3.63 -3.75 -7.35 -8.29 -0.27 -0.5 - - - -
- 2.58 - - -0.1 1.35 - -0.09 - 2.03 - - - 0.59 - -
- - - - - 3.47 0.41 - - - 1.86 - - - - -
- - - - - - - - - - - - - - 4.0 -
- - 2.27 0.9 2.55 0.83 - -2.94 - - -0.18 -2.02 - - -1.26 -
- -3.21 1.02 1.75 0.72 2.04 1.56 0.62 - -6.5 -4.46 -4.57 - - -2.64 -
-7.53 -9.65 0.1 0.59 1.01 -0.03 2.69 0.99 -0.25 -1.91 -2.14 -0.66 - - - -
-4.17 -3.98 1.77 1.38 2.17 2.22 -1.84 -4.82 - - -2.47 -2.49 - - - -7.94
- -4.64 - - - - -10.33 -5.19 3.13 2.84 -8.0 - - - - -
-3.61 -1.77 -0.18 0.21 0.67 1.05 3.09 -2.38 - - -1.57 -0.18 - - - -
-5.39 3.0 1.77 -0.02 0.05 -1.64 - 0.91 -4.03 - -4.94 -2.23 - -4.78 - -
- 0.89 -1.19 0.46 -0.47 0.09 -2.86 0.52 1.97 -0.53 - -0.59 - -1.46 1.74 -
- -4.85 2.86 2.74 0.46 -0.65 - -6.2 - - - - - - - -
-1.4 3.79 - - - -0.66 - -2.62 - -2.81 - - -1.52 -1.02 - -
- -1.65 - - - -2.12 -2.75 3.46 - - - - - -0.27 1.8 -
-5.16 - 0.57 0.08 1.3 2.17 2.5 -3.02 -5.44 - -3.76 -1.45 - - -2.19 -
- - - 0.03 - -0.34 - 3.03 - - - - - - 2.59 -
- - 0.8 3.22 1.74 - 0.71 - - - - - - - - -
- 2.31 - - - 2.0 - - - - - - - 2.82 - -
- - 1.88 1.21 - -0.16 1.91 -0.08 0.45 - 0.54 - - 0.69 - -
- - - - - - - - - - - - - - 4.0 -
- - 1.11 2.2 -5.3 -6.48 -4.52 -4.56 -0.97 -1.43 2.74 0.54 - -5.62 -3.55 -
- -6.49 0.62 0.4 2.13 1.34 1.2 -1.85 -2.94 -2.78 0.06 1.11 - -7.01 -2.62 -
-5.22 - 1.05 1.19 2.16 1.11 -8.11 -10.08 0.39 -0.48 1.32 -1.13 - - -6.13 -7.23
2.16 -0.2 1.87 2.06 0.61 -0.15 - - - -5.1 -2.74 -2.81 - - -3.83 -
-9.1 -5.0 1.2 1.7 0.55 0.74 -1.29 -5.86 -2.58 -2.14 1.86 1.5 - - -8.45 -
1.32 3.37 - - - - - - - - - - - - 1.67 -
- - - -0.66 - 1.56 1.34 1.22 - - 0.67 1.15 - - 1.9 -
- - - - 2.82 - - 2.02 - - - 2.29 - - - -
-6.1 - -0.91 -0.44 0.56 0.5 1.23 2.41 -4.72 - 0.54 1.31 - - -2.41 -
1.82 3.64 - - - - - - - - - - - - - -
-2.38 - -3.2 -2.48 -2.17 -3.28 -0.9 0.81 2.45 2.14 0.92 0.17 - - - -
2.55 - 3.34 - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
1.75 -0.22 2.18 1.62 - - 0.05 -0.76 0.87 - - - - -0.46 - -
-3.44 - -5.46 -4.97 -2.07 -5.79 2.79 0.76 - -9.58 1.83 1.77 - -8.39 -7.32 -7.42
-1.11 - -1.32 -0.4 2.81 0.96 2.18 -2.97 - - - - -0.41 - - -
- - - - - - - - - - - - - - 4.0 -
- - - -5.83 - - -7.46 2.44 2.7 1.99 - - - - -3.9 -
-2.96 - 0.1 -0.09 1.73 1.92 1.34 -3.43 - - -1.13 1.85 - - -3.24 -
- - - - - 2.51 - - - - - - - 3.37 - -
- - - - - - - - - - - - - - - -
- - -0.67 -4.59 1.7 0.22 3.41 -4.49 - - -2.92 -3.35 - - - -
- - - - 2.61 - - - - - - - - 3.3 - -
0.67 2.24 0.06 2.0 - - - - - 2.22 - - - - - -
-7.47 -4.64 -1.71 -0.38 -0.67 0.6 2.45 -2.12 -0.16 -0.45 1.78 0.95 - - - -4.88
- - 1.1 0.87 2.94 1.45 -0.3 -2.26 -5.04 - -0.95 -4.05 - - - -
- - - - - - - - - - - - - 4.0 - -
-6.72 -6.47 2.26 1.42 1.51 1.28 0.3 -2.6 -3.56 -3.72 -0.1 -0.42 - -5.11 - -
- - - 0.52 -0.68 2.16 - -0.67 2.58 - -0.14 - - - - 0.98
-0.54 - 0.52 0.88 -0.39 0.84 - -1.65 0.14 1.19 -0.75 - - - 2.38 -
- -0.7 -0.75 0.9 -0.04 0.21 3.43 - - - - - - - - -
- 3.79 -2.22 - - -4.26 - - 0.6 - - - - - -1.33 -
-3.0 -6.4 2.12 1.87 0.79 0.45 - -6.05 -1.52 -3.9 0.86 1.26 - - -2.96 -
1.15 2.43 0.38 1.03 -3.07 0.75 -2.88 0.34 -0.32 -2.59 - -1.07 -1.29 - - -
- 4.0 - - - - - - - - - - - - - -
- - 0.07 2.0 0.2 3.04 - - - - - 0.65 - - - -
- - -1.78 1.14 0.36 0.18 1.64 2.63 - - -0.12 -0.23 - - - -
-5.25 -8.32 0.26 0.2 1.04 -0.12 2.33 -0.06 -7.26 -4.87 1.45 0.87 - -7.0 -3.93 -
- - - - - - -4.9 2.31 2.2 2.49 -0.98 -1.67 - - - -
- - -3.76 -3.04 - -0.82 -1.54 -3.56 2.25 1.67 2.05 1.36 - - -2.48 -
- - - - - - - - - - - - - 4.0 - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
0.22 - - - - - - - - - - - - - 3.89 -
- 0.92 0.95 2.17 - -1.9 -1.53 - 1.03 1.09 -1.19 1.29 - - - -
3.97 - - - - - - - - - - - - - -1.43 -
-2.84 - 2.36 1.12 2.61 0.86 -2.02 - -1.32 - - - - - - -
- - -0.69 -0.36 -2.14 -2.31 -0.53 3.45 - - 0.13 0.51 - - - -
- 3.54 0.16 -1.83 -0.03 -0.61 -1.03 - - - - - - - -0.28 -
- - -0.88 - -0.75 - - -3.53 - - 2.59 3.13 - - - -
- 2.27 - - 1.01 1.44 - - - - - - - 2.69 - -
-6.62 - 0.1 0.45 -0.14 -1.45 -6.53 - - -5.23 2.94 2.19 - - - -
- - 1.43 2.7 1.44 0.27 -0.24 - - - -0.17 -1.6 - - -0.26 -
- - - - -5.34 -3.92 -6.14 -2.47 2.65 3.22 -4.81 -3.92 - - - -
3.99 -2.78 - - - - - - - - - - - - - -
1.73 -0.35 - - 0.08 -1.09 - -1.74 2.04 1.05 1.38 0.02 - -1.82 - -
- - 2.39 2.17 -1.93 - 2.51 -1.9 - - - - - - - -
- - 1.31 2.74 1.62 0.05 0.16 - -0.93 - -0.83 -0.94 - - - -
0.43 0.03 - - - - - 1.35 1.82 2.79 -0.61 - - - - -
-1.23 2.34 1.15 1.9 - -0.47 1.22 -1.5 - - 0.23 - - - - -
- - - - - - 4.0 - - - - - - - - -
- - - - - - - - - - - - - 4.0 - -
1.07 0.91 - -0.84 - - -1.42 -2.22 -0.61 - 2.95 -0.2 - - 0.14 -0.96
- - 1.49 1.84 1.63 2.3 0.29 -6.87 - - -3.0 -2.75 - -7.0 -3.92 -6.02
- - 1.6 0.75 - - 1.44 -1.61 -1.68 - 2.16 1.68 - -2.0 - -
- - - - - - - - - - - - - - - -
- 3.97 - - - - - - - - - - - -1.51 - -
2.87 2.59 - - - - - - - - - - - - 1.41 -
3.94 - - - - - - -0.59 - - - - - - - -
0.42 -2.38 2.1 1.75 1.3 1.9 -2.13 -5.1 -2.48 - -4.38 -3.49 - -4.22 - -
-5.54 - 1.22 1.15 1.13 2.04 0.84 -1.36 -3.64 -2.58 0.19 0.16 -3.87 -3.38 -1.89 -
- 1.66 0.26 0.6 0.38 - - - - - - - - - 3.14 -
-4.67 - 1.2 1.5 1.52 -0.61 2.76 -1.81 - - -4.23 - - -3.49 -3.0 -
-6.16 -7.91 0.71 0.09 1.5 -0.27 -4.5 -6.92 -2.82 -6.72 2.0 2.44 - - - -
-2.39 -2.13 1.18 1.29 0.09 0.66 2.06 0.19 - - -0.39 -0.08 - - 0.26 -
- -4.23 -1.21 -0.45 1.56 1.25 2.33 -0.88 -2.4 -3.92 1.05 0.64 - - - -
- -4.55 0.85 -0.92 1.98 1.86 1.7 -4.38 - -3.43 0.69 0.08 - - - -
- 4.0 - - - - - - - - - - - - - -
- - 2.91 2.25 - 1.89 - - - - - - - - - -
-2.87 - -0.11 - - - 1.39 2.94 0.03 - - 0.02 1.39 - - -
-3.34 -1.77 0.71 0.34 0.57 -0.77 -0.14 -2.68 0.3 0.36 1.13 -0.3 0.34 -0.65 0.88 -1.68
- -4.72 1.46 0.69 1.17 1.07 -2.48 -2.27 -0.96 0.02 1.25 1.56 - - - -
- - - - - - - - - - - - - - - -
0.19 3.43 2.02 - - - - - - - - - - - - -
- -1.42 1.81 -0.44 - 2.9 0.13 - -0.17 -0.12 - - - 0.03 - -
- 3.05 - 2.95 - - - - - - - - - - - -
- - - 0.81 - 0.44 - 1.83 2.04 - - - 2.39 - - -
-1.26 -0.6 0.28 0.62 1.26 -0.49 2.46 1.49 - - -1.37 -1.47 - - - -
- - - - - - - - - - - - - - 4.0 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.