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Heatmap: Cluster_196 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.5 -2.52 0.19 0.53 0.84 1.54 -0.28 -1.81 -1.17 -0.54 0.21 -0.4 -0.32 -0.71 -0.75 -0.06
0.32 -0.72 -1.83 -1.5 -0.87 -0.59 1.65 0.04 0.41 0.68 0.81 0.29 -0.7 -0.76 -1.4 -0.63
-0.56 -1.19 0.26 0.88 0.68 1.03 -0.13 -0.09 -1.49 -1.29 0.79 0.3 -0.12 -0.71 -0.87 -0.83
3.38 -5.84 -3.86 -3.39 -4.95 -3.63 -3.07 -1.68 -2.44 -4.15 -3.32 -3.54 0.77 0.06 -0.92 0.24
1.28 -1.73 -0.3 -0.94 -0.67 -1.51 0.43 -0.46 0.19 -1.83 0.46 0.58 0.55 0.32 -0.61 0.3
0.33 -2.67 -0.36 -1.06 0.2 0.34 -0.2 0.11 -1.03 -1.34 -0.13 -0.89 0.93 0.83 0.18 0.85
-1.78 -2.04 0.98 1.43 1.05 0.23 0.29 -0.44 0.06 -0.52 0.65 0.07 -1.22 -1.76 -2.29 -1.69
-0.52 0.42 -1.06 -0.36 -1.27 -0.84 -1.41 -1.32 1.32 1.93 0.12 -0.15 -0.34 -1.02 -1.47 0.0
-0.98 -1.39 -1.12 -0.31 -0.11 0.44 0.3 -0.39 -0.11 0.43 1.53 0.08 0.01 -0.39 -0.97 0.1
1.42 -0.11 -1.18 -1.52 -0.73 -0.29 0.32 0.47 -0.18 -0.41 0.22 -0.4 0.53 -0.19 -0.76 0.11
1.28 -0.16 - - -2.56 -5.03 0.02 -0.28 -1.22 -1.17 -0.49 -0.71 1.6 1.09 0.2 1.1
1.45 -0.82 -0.8 -0.95 -0.43 0.39 0.03 -0.69 -1.03 -0.49 0.69 -0.59 0.64 0.07 -0.25 0.01
0.15 -0.14 -0.49 0.19 0.11 0.17 0.1 -0.67 0.71 0.73 0.65 0.7 -0.96 -1.68 -2.1 -0.54
2.13 0.16 -1.7 -1.29 -0.45 -0.4 0.78 -0.32 -0.69 -0.95 0.83 0.19 -0.69 -1.17 -1.66 -1.59
2.28 -1.94 -2.26 -3.06 -1.02 -1.14 0.16 -0.37 -1.08 -0.37 -1.61 -2.33 1.12 0.22 -0.33 0.86
1.01 -0.93 0.06 0.77 0.71 0.17 -1.01 -1.73 -1.24 -1.3 -2.94 -5.48 0.96 0.44 0.11 0.85
0.43 -0.79 -1.94 -1.93 -1.7 -1.45 1.46 0.8 -4.43 -4.37 0.29 -0.7 1.35 0.57 -1.7 1.09
-0.49 -0.85 -0.62 -0.14 0.05 0.28 0.22 -0.33 0.96 1.12 0.71 0.35 -0.94 -1.19 -1.19 -0.86
0.02 -1.02 -3.37 -4.03 -2.87 -2.92 -1.24 1.08 2.17 2.19 -2.05 -3.03 -0.67 -1.05 -2.11 -0.41
0.28 -2.62 -0.71 0.55 -0.06 1.2 0.19 -0.34 0.15 0.48 0.57 -0.28 -0.42 -0.65 -1.21 -0.44
0.09 -1.24 -1.77 -1.49 -0.89 -0.61 -0.11 1.07 0.73 1.19 -0.18 -1.02 0.26 0.08 -0.4 0.4
-2.43 -5.09 1.12 -0.4 0.51 0.04 0.89 -1.46 -2.23 -1.56 1.43 1.23 -0.28 -0.71 -1.26 -0.44
0.69 -0.89 -0.44 0.32 0.87 0.45 1.93 -1.02 -0.76 -1.19 0.31 -0.64 -0.92 -1.79 -2.0 -1.44
0.98 -0.49 -0.54 0.03 -0.37 -0.15 0.72 -0.06 -0.16 -0.37 0.69 -0.74 0.28 -0.42 -0.93 -0.07
-0.18 -1.42 -1.2 -0.55 -0.77 -0.3 0.62 -0.12 0.36 0.85 0.84 -0.36 0.42 -0.16 -0.67 0.33
0.22 -0.95 -0.13 0.58 0.17 0.83 -0.31 -1.38 0.01 0.73 0.76 -0.46 -0.25 -0.88 -1.08 -0.2
-0.64 -1.22 0.27 0.66 0.27 0.66 1.37 0.14 0.02 -0.2 0.4 -0.93 -0.58 -1.02 -1.57 -1.18
0.05 -1.66 -2.51 -1.82 -1.94 -1.15 0.51 -0.28 -1.22 -0.07 0.7 -0.52 1.29 0.71 -0.01 1.3
0.42 0.26 1.75 1.87 1.24 -0.42 -1.61 -1.62 -2.04 -4.74 -3.48 -2.58 -0.54 -0.9 -1.39 -0.85
0.75 0.68 -1.87 -1.7 -0.53 -0.86 0.98 0.12 0.17 0.22 1.06 0.32 -0.63 -1.17 -1.57 -0.36
-1.87 -3.89 0.63 0.97 0.02 -0.75 -0.0 -1.37 -0.06 0.4 1.36 1.04 -0.48 -0.95 -1.75 -0.45
-1.02 -2.12 -1.39 -0.81 0.62 0.12 -1.74 -1.26 0.34 0.45 1.81 1.16 -0.2 -0.71 -2.12 -0.14
-0.27 -2.28 -2.34 -3.07 -2.4 -1.13 -1.04 -0.27 0.21 2.4 -3.88 -3.98 1.08 0.62 -0.64 0.85
0.75 -0.74 -1.54 -1.74 -0.89 -0.15 0.3 -0.06 0.3 0.29 0.55 -0.04 0.42 0.17 -0.27 0.35
0.6 -0.73 -1.15 -1.51 -1.22 -0.11 0.72 -0.15 -0.27 -0.18 0.81 -0.57 0.74 0.18 -0.41 0.56
-0.51 -2.32 0.22 0.54 0.96 0.91 0.38 -0.4 -2.22 -1.61 0.74 0.11 0.29 -0.5 -0.98 -0.22
-1.5 -3.83 -1.06 -1.29 -1.89 -1.12 0.87 0.76 -2.79 -1.9 0.01 -0.74 1.55 1.03 0.47 1.04
0.78 -3.5 1.46 1.56 0.8 -0.0 -3.79 -3.38 -2.68 -4.22 -1.85 -3.7 0.63 0.3 -0.87 0.77
-0.46 -0.25 0.54 0.76 0.57 0.29 0.38 -0.48 -0.33 -0.54 0.52 0.76 -0.85 -1.09 -1.33 -0.93
-0.13 -1.68 -2.52 -2.5 -1.81 -1.05 -0.54 -1.13 -0.37 0.47 0.29 -0.41 1.4 0.46 0.71 1.44
0.37 -1.06 -0.38 -0.65 0.23 0.54 -0.03 -1.15 -0.87 0.35 0.54 -0.37 0.66 0.22 -0.27 0.18
0.41 -0.03 -1.71 -1.59 -1.15 -1.07 0.8 -0.05 0.22 -0.21 0.67 0.36 0.33 0.25 -1.23 0.71
-0.25 -1.33 -0.22 0.13 0.04 0.15 -0.02 -0.62 -0.42 -0.25 1.15 0.7 0.28 -0.58 -0.82 0.2
0.58 -0.78 -1.22 -1.41 -1.31 -1.1 0.83 0.18 0.36 0.39 0.33 -0.51 0.47 0.24 -0.12 0.37
-0.31 -0.64 -2.82 -2.02 -1.97 -1.17 0.78 -0.46 0.72 0.55 0.79 0.21 0.49 0.35 -0.36 0.64
0.89 -2.1 -1.71 -2.01 1.06 1.48 -0.12 -0.1 -2.44 -1.0 -0.53 -1.08 0.62 -0.1 -0.36 0.61
-0.66 -1.95 0.35 0.68 0.38 0.46 0.75 0.03 -0.37 -0.02 0.84 -0.42 -0.08 -0.84 -1.28 -0.64
-2.25 -6.03 -2.07 -2.31 -0.05 -1.9 -0.26 -0.88 -3.3 -1.58 -1.1 -1.07 1.75 1.31 0.96 1.83
0.96 -0.89 -1.5 -2.35 -1.05 -0.83 -0.09 -0.45 -1.29 -0.73 1.15 0.29 1.1 0.51 -0.17 0.43
-0.24 -1.87 -0.59 -0.33 -1.81 -1.39 -1.29 -1.11 -3.5 -4.5 -2.77 -2.98 1.91 1.32 1.21 1.55
-0.45 -2.3 -1.08 -1.63 -3.47 -2.36 1.31 -0.38 -0.83 -0.47 -0.01 0.07 1.39 0.57 -0.19 1.29
0.81 -0.23 -1.07 -1.06 -0.67 0.11 0.3 -0.4 0.24 0.29 0.5 -0.13 0.29 -0.09 -0.16 -0.07
-1.94 -3.87 -1.26 -1.11 -1.16 -1.13 0.29 0.62 1.22 1.41 0.28 -0.97 0.46 0.03 -0.46 0.37
-1.0 -1.4 -0.39 -0.24 0.13 -0.28 1.06 1.28 -0.15 0.66 0.73 0.2 -0.68 -1.23 -2.11 -1.03
1.46 1.14 -2.0 -1.63 -1.39 -1.11 0.23 -0.16 1.22 0.86 -0.17 0.0 -1.19 -1.54 -1.74 -1.22
-1.55 -1.95 -0.02 0.71 -0.02 -0.17 1.2 0.47 -0.27 -1.19 1.3 0.58 -0.54 -1.15 -1.73 -0.83
0.3 -1.04 -1.62 -1.09 -0.1 -0.39 -0.09 -0.41 0.07 0.99 0.67 -0.15 0.66 -0.17 -1.18 0.73

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.