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Heatmap: Cluster_45 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.68 1.85 -1.45 -1.2 -2.32 -0.93 -2.63 1.57 -0.4 -1.25 0.75 0.75 - - - -
- - - 3.53 - 2.16 - - - - - - - - - -
-5.81 - 1.36 0.94 -0.2 -0.07 2.3 2.08 - - -3.37 -1.16 - - - -
- - - - 0.57 - - - - - 2.7 3.01 - - - -
- -9.84 -0.5 0.75 -3.44 -3.3 -4.04 -0.42 1.6 1.5 1.75 1.76 - - - -
- - 1.82 -1.68 3.46 -3.64 -4.28 - - - -2.93 -0.23 - - - -
- - -0.97 -1.2 2.67 2.2 -0.94 1.46 - - -0.83 -1.94 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -4.09 -2.34 - - 3.25 -0.82 -0.61 1.68 -0.29 -0.05 - - - -
- - - - - - - - - - - - - - - -
- - 2.07 2.16 0.56 0.86 - - - - 1.43 -0.41 - - - -0.78
- - -0.94 -0.49 - - - -7.84 2.24 1.42 2.27 1.35 - - - -
- 2.38 - 3.35 - - - -0.67 - - - - - - - -
-7.21 - 0.1 0.57 0.39 1.9 -2.31 -6.34 -1.03 0.05 2.18 1.08 - - - -
0.66 - - 3.52 - 1.57 - - - - - - - - - -
-5.33 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - 4.0 - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-0.46 - 3.16 2.2 -1.87 -0.74 - - - - -0.72 -2.09 - - - -
- -3.46 -0.39 -1.54 2.32 0.96 2.93 -6.34 - - -3.0 -3.11 - - - -
-5.23 - 0.86 0.07 0.78 0.39 1.13 -1.74 0.27 0.06 1.05 1.71 - - - -
- - -0.53 0.59 3.73 -1.04 -5.81 -11.66 - - -5.39 -6.48 - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - 2.46 3.39 - - - - - - - - - - - -
- - 2.51 0.62 2.07 -0.92 -0.83 0.03 - - 0.46 0.11 - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 1.69 - - - - - 2.47 - - 2.86 - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
1.03 3.8 - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.65 - - - - - - 1.8 - - - - - - - -
- - - - - - - 3.8 1.06 - - - - - - -
- 0.41 - - - - - 3.87 - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- - - - - - - - - - - 4.0 - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- -2.21 2.11 2.08 -0.2 2.32 -0.15 - -1.07 - - - - - - -
1.19 - 2.02 - - - - 1.67 - - 2.7 - - - - -
0.22 - 1.06 - 1.19 3.03 - 1.2 - - - - - - - -
- - - - - - - - - - - - - - - -
-5.17 2.47 - -3.89 - - - -2.07 2.01 2.61 - - - - - -
- - - - - - - - - - - - - - - -
- - 2.47 2.07 1.28 1.95 - - - - - - - - - -
- - - - - - - - - - - - - - - -
-0.78 - - - 2.26 - - 1.98 1.71 1.76 - - - - - -
1.83 - 1.01 -1.51 1.26 0.96 1.58 -0.67 -0.98 - 0.12 -0.99 - - - -
- - - - - - - 2.25 2.18 2.74 - - - - - -
- - - - - - - - - - - - - - - -
-6.65 -2.17 1.45 1.67 1.79 1.81 0.03 -3.08 - - 0.06 -0.51 - - - -
- - - - - - 4.0 - - - - - - - - -
- - - 4.0 - - - - - - - - - - - -
- - - - - - - - - - - - - 4.0 - -
- - - 3.64 - - 1.83 - - - - - - - - -
- - -2.95 - -2.82 - -2.3 3.81 - -0.99 - -0.07 - - - -
- - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.