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Heatmap: Cluster_43 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.11 -2.04 0.08 -0.1 0.28 0.62 0.12 -0.69 -1.32 -0.04 1.0 0.2 0.31 -0.11 -0.43 -0.33
- - -0.7 -0.98 2.95 1.64 -1.21 -1.44 - - - - 0.93 -0.88 -1.68 -1.04
-5.27 -4.8 1.73 1.48 1.89 1.7 -2.8 -3.05 - -6.88 -3.03 -3.35 -0.15 -1.45 -0.7 -0.99
-2.77 -6.55 0.5 0.75 1.13 1.44 -2.01 -1.17 - -4.21 -1.55 -1.57 1.98 0.78 -1.52 -1.3
-2.08 - 0.27 -0.43 0.39 0.69 -1.19 -0.59 -4.2 -3.16 -0.95 -1.04 1.94 1.12 0.41 0.36
-2.93 - -1.51 -0.87 0.03 -0.02 0.26 -0.11 -1.06 0.57 0.51 -0.34 1.88 0.44 -0.02 -0.67
- - - - - - - -5.92 -2.68 - -2.58 - 3.17 1.72 0.62 0.85
1.31 -0.49 -0.2 -0.53 -1.02 -0.89 0.31 -0.74 -2.01 -2.1 0.08 -1.17 1.21 1.17 -0.03 -0.21
-1.42 -3.13 -3.6 -3.8 -3.17 -2.53 0.59 -0.48 0.03 0.06 0.63 -0.13 1.75 0.93 0.23 0.92
-3.21 -3.42 0.53 1.2 -0.48 -0.37 -0.16 0.13 -0.47 -1.34 -0.66 -0.77 1.17 0.65 -0.29 0.69
-0.39 -3.31 -3.76 - -1.31 - - -2.61 - - - - 2.61 1.64 1.13 1.62
0.49 -2.69 -0.6 -1.77 -0.39 0.24 -2.19 -1.22 -1.52 -1.46 -1.01 -1.79 1.92 1.38 -0.22 1.1
-1.47 -4.23 -2.66 -1.45 -0.68 -1.75 0.08 0.23 0.22 0.49 0.68 0.76 1.4 0.62 -0.35 0.13
-5.71 - - - - - -2.96 -3.68 - -4.22 -4.19 - 3.12 2.0 0.71 0.44
-1.09 -3.06 -0.17 0.85 1.21 1.06 -0.95 -0.49 -0.44 -0.35 0.35 -0.58 -0.04 -0.26 -0.54 0.19
- - -3.32 -3.98 -1.62 -1.76 - - - - - - 3.01 1.98 0.88 0.46
-2.67 - - - -0.67 - -2.46 -1.66 -0.19 - - - 3.44 1.02 - -0.01
-2.54 -1.6 0.85 1.92 -2.01 -3.71 0.74 0.93 -0.61 -2.44 -1.17 -1.5 1.44 -0.45 -1.84 -0.61
-2.98 -4.61 0.36 -0.25 0.53 0.84 0.23 -0.65 0.37 0.8 1.52 0.96 -1.57 -2.63 -2.73 -2.51
0.37 -0.42 -1.57 -0.78 -2.24 -1.37 1.81 0.75 -2.88 -2.76 -0.9 -1.07 0.74 0.35 -0.24 1.11
- - - - -2.97 -0.75 -2.7 -1.89 - - -2.33 - 2.99 1.05 1.38 1.02
-0.05 -3.92 1.05 1.45 1.3 1.01 -1.67 -0.92 -1.6 -1.17 0.29 -0.15 -0.47 -1.39 -2.4 -0.6
-0.2 -2.0 0.49 0.51 0.73 0.68 0.32 -0.63 -1.49 -1.47 0.06 -0.49 0.49 0.11 -0.14 0.04
-1.31 -2.24 0.67 -1.89 0.12 -2.06 -2.53 -0.55 0.81 1.92 0.05 0.41 0.26 -0.4 -1.4 0.13
- - -1.53 - - - -1.21 - - - - - 3.06 -0.55 - 2.63
0.76 -2.51 -1.34 -0.14 -0.75 -2.62 -1.88 0.18 -1.75 -1.89 -0.29 -0.09 1.79 0.32 0.06 1.38
-0.86 -2.31 -0.57 -0.66 0.66 0.87 -0.41 -0.47 -3.74 -1.68 -0.84 -1.94 1.59 1.45 -0.85 0.64
-3.1 - -0.12 0.22 - - 0.04 -0.77 -1.71 -2.65 -0.29 0.09 2.21 1.78 - 0.82
-7.81 -8.13 2.61 2.84 -4.8 -3.01 -0.24 -4.82 - - -0.29 -3.05 -2.08 -3.34 -2.58 -2.32
-0.66 0.71 -0.46 -0.61 0.02 -0.3 0.5 0.64 0.86 0.04 0.2 -1.68 0.35 -0.62 -0.87 -0.38
-0.15 -2.97 0.86 0.93 0.7 1.01 -0.47 -1.12 -2.19 -1.81 -0.63 -0.74 1.25 -0.77 -0.28 -0.16
0.64 -2.88 -0.44 -1.19 0.35 1.5 -0.5 -1.28 -3.12 -2.48 -0.86 -0.67 1.48 0.18 0.2 0.43
-0.35 -2.09 -0.54 -1.0 -0.02 0.14 0.62 -0.22 -0.41 -0.58 0.49 -0.72 0.78 0.4 0.3 0.68
-2.8 -5.83 -0.36 0.47 0.31 0.51 2.68 -1.71 -2.4 -2.4 1.37 -0.42 -2.0 -3.37 -3.7 -2.78
1.25 -1.56 -1.8 -2.13 -1.37 -0.37 -1.05 -1.4 -1.63 -1.24 0.15 -1.83 1.5 0.97 0.89 0.98
0.18 -2.07 -0.21 -0.48 0.52 0.75 0.23 -0.13 -1.82 -1.76 0.17 -0.12 1.06 0.63 -0.65 -0.07
- - - -4.16 - - - -0.43 0.24 1.94 - - 2.46 0.49 -0.61 1.38
-1.2 0.15 0.8 0.48 1.61 1.57 -0.77 -1.71 -0.73 -0.9 -0.17 -1.13 -0.72 -1.19 -2.38 -0.56
1.62 2.42 - -2.58 - -1.49 -3.26 1.52 -4.35 -2.29 -4.26 -3.36 0.46 -1.77 -0.02 0.05
-1.81 -3.21 0.67 1.35 1.71 1.23 -0.89 -0.74 -3.53 -3.49 -2.41 -3.53 1.5 -1.3 -1.23 -0.74
0.8 -0.66 0.66 0.42 -0.03 0.95 -1.08 -1.93 -4.29 -3.23 -3.2 -2.72 1.3 1.16 -0.39 0.25
0.72 0.4 -3.7 -3.22 -4.15 -2.91 -3.37 0.33 -6.31 - -1.57 -2.73 2.29 0.75 0.2 1.63
-2.23 - -2.23 - -1.54 -2.24 - -1.56 1.21 0.91 -0.5 - 2.47 1.03 - 1.13
-5.26 - 0.32 0.47 1.21 0.65 -3.42 -1.67 - - -3.62 - 2.21 1.28 -0.46 0.25
-3.86 0.8 - - - - -3.11 -3.52 -3.43 - - -3.45 3.02 1.04 -0.14 1.46
- - - - - - - - - - - - 3.27 2.01 - 1.22
-2.92 - -1.65 -1.81 -1.69 -1.99 0.62 0.68 - -3.29 -1.25 -3.36 2.35 0.42 1.07 1.26
- - -0.59 -1.58 0.64 0.9 -5.91 - -3.06 -1.26 -1.96 -2.66 2.13 1.33 0.23 1.35
-0.8 -1.31 -2.74 -2.91 -2.32 -0.43 1.66 2.31 -0.89 -1.96 0.9 0.04 0.21 -1.37 - -1.23
-0.25 -1.54 -2.59 -3.24 -0.04 1.47 -0.48 0.95 -0.18 -1.35 1.52 0.51 0.55 -1.49 -1.96 -1.0
-0.65 -1.46 -2.18 -2.0 -2.6 -3.19 0.7 -0.12 0.53 0.94 1.39 0.39 0.71 -0.33 -0.7 0.45
-0.43 -1.4 -4.56 -5.55 -4.76 -3.92 0.52 -0.58 -3.3 -5.24 -1.3 -1.67 2.08 1.43 0.81 1.63
-2.02 -2.43 0.79 -0.19 -0.02 0.39 -1.5 -0.86 -5.67 -4.03 -1.88 -1.88 2.0 1.07 0.54 0.66
-2.53 -1.89 1.6 1.73 1.34 0.42 -0.41 -1.37 -1.04 -0.71 0.07 -0.28 -0.65 -2.49 -2.35 -2.31
0.43 0.04 - - - - - - -1.64 - 0.64 0.13 2.26 1.49 0.65 0.55
-0.33 -2.64 0.35 0.07 0.55 1.55 -1.09 -1.79 -2.12 -1.61 0.37 -0.86 0.89 0.17 0.05 0.19
-1.36 -2.97 -1.11 -0.63 -0.7 0.18 -0.32 -0.36 -0.21 0.53 1.17 0.21 0.9 0.41 0.17 0.02
- - -1.88 -0.95 - -1.9 - - - - - - 2.84 1.11 - 2.49
-2.99 - -0.8 0.16 0.79 0.6 -0.34 -1.03 -3.01 -2.15 -0.46 -2.02 2.03 0.76 -0.13 0.71
0.33 -1.81 0.52 0.71 0.33 0.04 0.45 -0.02 0.13 -0.71 -0.13 -0.65 0.33 -0.1 -1.94 0.05
- - - - - - - - - - - - 3.12 1.4 1.24 1.21
-1.77 -3.55 -0.87 -0.53 1.42 1.24 1.21 -0.91 -1.93 -0.73 0.57 -0.76 0.63 -0.53 -0.45 -0.75
- - - - - - -2.64 - - - -0.28 -1.38 2.52 2.43 - 1.81
0.3 -0.3 -2.81 - -2.69 - -1.03 0.61 - -3.14 0.22 -0.89 1.68 0.44 1.39 1.41

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.