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Heatmap: Cluster_73 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -2.05 - 3.0 2.69 -2.43 - - - -2.17 -0.59 - - -2.33 -
- - 2.07 2.81 1.61 -0.14 - - - - - - - -0.29 - -
0.55 -0.21 - - - - - - - - - - - - 3.77 -
0.31 -0.51 -0.34 -1.21 -1.63 -0.22 - -4.53 -1.52 -1.47 0.38 2.37 -0.51 -1.26 1.53 -1.24
- -5.08 0.29 0.5 0.23 1.66 0.69 -2.3 1.85 0.66 0.15 -0.25 - - -4.58 -
- - 3.8 - - - - 1.07 - - - - - - - -
- - 4.0 - - - - - - - - - - - - -
0.97 1.52 0.47 -1.01 -4.81 -3.35 - -2.34 2.46 0.55 0.42 -0.88 - - - -3.12
-8.64 -5.78 -1.31 -0.68 0.05 0.07 -3.68 -0.12 1.72 2.91 -0.85 -0.95 - - -5.99 -
- - 0.03 -1.19 1.92 1.25 2.21 -3.83 - - -2.67 1.78 - - -3.75 -
-1.69 -2.16 1.43 1.27 1.84 2.21 0.96 -7.36 - - -5.04 -2.82 - - - -
- - -3.17 -0.26 1.77 0.88 2.68 -4.23 - - -0.51 0.84 - - -0.28 -
- 4.0 - - - - - - - - - - - - - -
0.8 -2.82 - - - -3.47 -1.78 -4.49 - - - - 0.07 -0.02 3.46 -0.64
-2.02 -1.04 -0.04 0.16 -0.32 -0.67 -2.38 -2.81 2.13 0.54 -0.33 -0.94 -2.56 -2.73 1.9 -2.24
-3.02 -2.57 0.15 0.21 0.39 1.55 -0.02 -2.41 -0.02 0.01 0.07 -0.82 -3.66 -2.4 1.95 -1.75
-1.55 1.65 0.28 -0.68 -0.11 0.59 2.06 -4.67 -3.76 - -2.66 0.99 - -1.52 0.56 -
-1.08 - -0.25 - -0.12 - - - - 0.4 - - - - 3.64 -
- 4.0 - - - - - - - - - - - - - -
-3.03 -2.94 -1.0 -0.46 2.31 2.23 -1.17 -1.83 -0.42 -0.44 -0.11 -1.05 -3.35 -3.01 -0.12 -3.36
- - - - - - - - - - - - - - - -
-3.55 -2.98 1.96 1.84 0.49 1.41 -1.94 -1.8 -1.55 - 0.6 -1.34 -2.81 -3.91 -0.25 -1.35
- 3.12 - - - 2.87 - - - - - - - - - -
- -3.02 -0.21 1.74 1.17 0.94 2.51 -3.79 -3.3 - -0.29 -1.98 - -4.03 -0.96 -
- 3.97 -3.72 - - -3.75 -3.97 -7.96 - - -3.64 - - - - -
- - - - - - - - - - - - - - - -
-7.19 3.96 -4.77 -2.76 -3.1 -4.19 -5.65 -9.27 -8.48 -8.42 -6.57 -7.49 - - - -
0.19 3.21 -1.74 -2.41 -1.02 -0.19 -0.41 - -2.17 - - - -0.82 - 1.15 -
-4.39 -0.22 - -4.98 - -6.34 -1.31 -0.49 2.72 2.79 -3.04 -4.73 - - -2.29 -3.54
-4.07 -3.46 -1.85 -1.63 -1.77 -0.22 -2.59 -1.85 1.93 1.96 1.02 -0.4 -0.69 -1.36 0.45 -0.35
-1.11 - -0.76 -1.02 2.25 0.94 2.2 - - - - 0.79 - - 0.55 -
- - 0.03 2.36 2.87 0.13 - - - - -2.63 -2.73 - -1.47 -0.4 -
- -3.22 -1.67 -1.93 -4.13 -2.71 -3.81 -1.06 1.97 0.57 -0.27 0.35 - -3.45 2.8 -
-3.4 -2.27 0.2 0.41 -0.23 -0.02 -0.59 -0.92 0.42 1.34 0.35 -0.34 -0.55 -0.83 1.25 -0.65
-4.17 - -0.86 -0.38 -0.55 0.58 1.96 -1.74 1.46 2.05 -0.25 -1.05 - -5.17 - -
-2.98 -4.88 1.23 1.41 -1.2 -0.33 2.29 -1.92 -2.75 -3.09 -1.1 -2.49 -2.08 -2.14 1.49 -1.85
-7.88 -10.01 -0.69 -0.38 0.26 2.0 -0.88 -1.65 -1.73 -0.46 1.92 1.66 -3.86 -4.17 -1.56 -3.25
-4.01 0.77 0.73 0.41 0.48 1.68 0.5 -1.53 -4.26 - 1.32 1.05 - - -1.93 -
-5.54 - 0.38 -0.14 0.08 0.44 -4.22 -3.76 0.65 1.2 2.43 0.98 - -7.12 - -
- - 2.12 1.43 -0.13 0.54 -1.04 -3.55 -1.18 -0.44 -0.82 - -0.57 0.21 1.14 -2.28
- 0.37 - - - - - - - - - - - - 3.88 -
- - 0.49 1.7 3.0 1.16 -6.54 -7.53 - - -1.3 -0.5 - - - -
- -2.12 0.88 1.63 2.08 2.11 -0.62 -2.24 -3.33 -5.59 -1.19 -0.23 - -8.21 -6.14 -
- - - - - - - - - - - - - - 4.0 -
-5.79 -4.96 0.25 0.12 -1.17 -0.24 -3.44 -2.59 -2.03 -1.21 -2.09 -2.78 -2.45 -3.13 3.37 -1.16
1.07 -4.7 1.03 1.03 0.8 0.99 -2.73 -1.81 -3.0 -2.98 -1.09 -2.27 -2.68 -1.34 1.99 -2.8
-0.56 0.4 -4.07 -2.41 -3.36 -2.94 -4.16 -4.27 2.12 1.18 1.32 1.23 - -2.41 0.61 -2.01
4.0 - - - - - - - - - - - - - - -
-4.41 -1.2 2.09 2.03 1.19 1.46 -0.89 -2.57 -2.67 -2.46 -1.08 -1.79 -5.34 -5.7 -2.08 -4.43
- -3.89 0.92 1.83 0.71 0.36 0.98 -3.1 -0.22 -1.2 1.2 0.9 - - - -
-7.41 -6.23 -1.13 -0.42 2.03 1.92 1.6 -0.39 -1.33 0.03 -0.27 -0.21 - - - -
-4.93 0.9 0.08 -0.59 0.97 0.93 -1.05 -2.08 -5.05 -4.57 -2.08 -2.32 0.73 -0.34 2.03 -0.39
- - 1.39 2.37 1.62 1.54 0.91 - - - - - - -1.6 - -
-1.6 -0.03 -0.44 1.08 0.28 0.77 1.1 -1.32 -2.88 - -0.79 - -0.52 -0.75 2.13 -
- - 0.9 0.96 - - - - -2.02 -1.36 2.96 1.92 - - - -
- - - - - - - - - - 3.61 1.92 - - - -
-1.64 -0.96 -0.01 0.3 -1.71 -1.12 -0.64 -0.34 0.68 0.29 0.4 -1.14 -0.21 -0.3 1.8 0.0
-4.79 -5.91 -6.26 -5.93 - -7.89 -2.36 3.97 -7.33 - -5.21 - - - -3.99 -
0.33 -0.1 0.59 0.71 -2.81 -0.81 -0.95 0.11 -0.97 -1.89 0.99 0.45 -1.61 -1.66 1.81 -3.73
- -3.8 -0.25 0.51 -4.1 -3.73 -2.0 -3.35 0.61 0.91 2.63 1.85 - - - -
-2.2 -3.16 0.3 -0.21 -0.26 0.51 0.66 0.38 -0.49 -1.23 -0.46 -2.02 0.25 -0.37 1.48 0.64
-6.94 -6.92 2.19 1.94 1.85 1.42 -2.08 -3.24 -2.31 -3.28 -2.46 -2.76 -4.19 -3.88 -3.08 -3.46
-0.77 0.15 -1.58 -0.7 -2.19 -1.31 -0.05 -0.14 -6.01 -3.63 -3.33 -4.43 1.07 0.63 2.26 1.13
- 2.87 -4.39 -6.06 -4.45 -6.2 -5.95 3.06 -2.47 -6.34 -8.31 - - - - -
-1.95 - - - -1.04 - - 3.72 - - 1.07 - - - - -
-2.54 - - 1.4 1.72 1.4 0.59 -1.81 -1.16 - 0.93 -0.17 - - 1.15 -
- - - - - - - -1.53 - - - - - 1.94 3.01 1.91
- - -2.52 - - - 2.53 3.33 - - - - - - - -
-2.3 3.3 -1.94 -1.19 -4.39 -2.56 -2.02 -1.36 -2.96 -2.9 - - - -0.2 1.69 -
-1.81 - - - 3.01 - - - - - 2.63 0.53 - - - -
- - 0.55 1.02 - 0.56 3.11 -4.08 - -0.38 - -1.83 - - 0.34 -
-6.62 -5.7 0.64 0.96 2.44 1.14 -0.42 -2.18 -2.85 -1.45 -2.07 -3.9 -1.63 -2.51 1.28 -3.09
-4.1 - 1.88 2.28 -0.45 0.43 -1.52 -4.18 -6.23 -6.17 -3.14 -3.44 -1.01 -2.42 1.91 -2.09
- - - - - - - - - - - - - - - -
-7.87 -0.05 -2.07 -0.93 -3.09 -0.95 -2.51 2.95 -3.78 -3.71 -4.9 -6.59 -0.26 -1.48 1.89 -0.69
0.97 3.81 - - - - - - - - - - - - - -
0.15 -0.61 - - - - - 3.64 - - - - - 0.8 - -
- - 1.57 1.44 0.45 1.08 - - - - - -0.62 - - 2.63 -
-1.2 -4.4 1.45 0.13 1.23 0.14 - -0.59 - - 1.27 0.55 - -2.08 1.57 -1.11
2.93 2.93 -5.63 -6.62 -4.23 -4.18 -4.37 -4.38 -4.39 -3.63 -2.05 -3.49 - - -5.06 -6.16
- - -1.95 0.38 -2.82 2.56 -3.62 -2.6 -1.39 0.26 2.16 1.06 - - - -
- -7.93 1.91 2.69 1.19 -0.04 0.45 -6.71 - - -0.99 -0.57 - - - -
-4.07 -4.79 2.07 2.01 -0.71 -0.37 1.79 -1.93 -3.25 -2.54 -1.18 -2.08 -3.0 -3.6 0.33 -2.92
-5.95 -4.11 -1.58 -0.51 -1.23 -0.81 - -4.01 - -3.54 -4.55 - -3.25 -0.03 3.65 -3.38
-2.33 -1.11 -0.17 0.22 -1.28 -0.62 -0.97 1.54 0.39 0.59 -0.1 -0.88 -0.4 -0.94 0.84 0.52
-2.17 -3.49 -0.49 -0.0 0.71 0.88 -1.39 2.14 -1.11 -1.47 -0.42 -1.57 -2.87 -2.9 1.67 -1.48
- -2.71 -0.19 -0.86 0.27 2.0 -2.86 -1.67 - - - - - - 2.7 1.19
-1.24 -1.18 -0.04 0.13 0.37 0.73 -0.02 0.04 -0.05 -0.5 -1.46 - -0.02 -0.92 2.06 -1.34
-7.36 -4.81 -0.17 -0.19 -2.8 -2.14 -2.72 -2.84 1.5 0.35 1.9 0.05 -4.6 -2.37 2.1 -3.14
- 2.29 1.43 -0.46 -0.26 0.97 - -1.44 - -0.61 0.6 -0.17 - - 0.54 -
-6.24 -5.3 0.93 1.19 -1.68 -0.57 -1.79 -3.97 -1.39 -1.15 1.43 0.63 -3.35 -2.33 2.3 -2.74
2.07 0.26 - - - - - - -2.69 - -2.6 -0.12 0.64 0.72 2.62 -
1.42 -0.04 -1.42 - - - - - - - - - - -2.22 3.56 -
3.01 -2.39 0.04 0.29 -2.15 -0.76 -4.19 -1.36 0.15 0.42 -1.71 -2.47 -5.69 -3.98 0.14 -2.82
-1.22 1.92 -0.74 -0.82 -0.02 -1.19 0.18 2.54 - - - -0.17 - -1.92 0.15 -
-2.93 -3.59 1.11 1.71 1.08 1.54 -2.54 -2.13 -0.98 -4.74 -1.33 -2.17 -1.61 -1.98 1.51 -1.54
-6.51 - -1.23 0.13 1.72 0.95 2.96 -4.35 - - -1.43 -0.13 - - -2.81 -
-6.58 3.79 -2.74 -5.19 -4.44 -3.96 - -3.58 -4.91 -4.86 -4.81 - - - 0.78 -
-2.65 -6.39 1.66 0.67 0.25 -0.44 1.43 -1.94 -0.82 -0.31 1.56 0.01 -5.97 -4.26 -0.47 -3.51
-5.17 -2.09 -1.76 0.05 -0.13 -0.94 0.89 -1.81 0.48 -0.25 0.41 1.07 -0.11 -0.21 1.61 -1.7
-3.98 -1.14 0.76 1.29 1.04 0.66 -3.14 -1.63 -0.9 -2.17 0.33 -0.07 -0.55 -1.39 1.69 -
0.54 3.35 - - - - - - - - - - - - 2.11 -
- -4.43 -1.26 -0.11 0.83 -0.52 -3.85 -6.57 -0.39 -1.13 2.24 2.61 - - - -
- - 1.51 1.54 0.74 2.45 -0.7 -2.13 -1.96 -0.73 -1.28 -0.8 - -3.74 -1.67 -
- - 0.91 1.88 0.52 0.75 -3.93 -3.31 -3.7 -1.64 -3.6 - - -3.43 2.64 -1.46
- - -1.25 -2.5 3.03 2.18 - - -1.27 - - 0.32 - - 0.11 -
-4.07 3.44 -2.35 -3.36 -4.78 -2.77 -4.85 -4.48 -3.6 -3.28 -5.81 -5.94 -4.55 -1.94 1.95 -3.13
3.25 -2.03 -2.12 - - - -1.06 -4.06 -3.11 -3.05 -2.01 -1.12 - - 2.17 -
-5.89 -6.22 1.79 2.08 2.03 1.82 -6.36 -5.53 -4.54 -3.15 -2.5 -2.04 - - -4.8 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.