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Heatmap: Cluster_34 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- 3.79 - - - -5.5 -6.13 0.43 -3.89 - - - -3.55 -3.63 -0.99 -3.67
- - -4.57 -0.28 - -2.28 -3.07 -1.14 - - 0.36 3.67 - - -1.68 -
-4.23 3.36 0.19 -0.22 1.02 -0.04 -2.55 -6.09 -4.54 -3.8 -4.45 -4.29 - - -1.74 -
- - - - - - - -0.62 - - - - - - 3.94 -
- - 2.61 2.2 -0.13 0.64 0.25 -3.86 - - -4.25 -4.35 - - 0.56 -
- - - - 0.14 - - - - - - - - - 3.9 -
- - - - - - - - - - - - - - 4.0 -
- - 0.76 0.75 1.37 0.69 1.94 -1.77 -0.67 -1.25 0.76 0.43 - - -2.4 -
-4.76 -2.98 0.72 1.52 1.1 1.85 -4.46 -0.32 0.5 1.55 -3.3 -2.47 - - -3.26 -7.36
- - 0.09 -0.69 2.6 -0.32 2.61 -5.28 - - -2.94 - - - 0.27 -
- - 1.84 1.36 -0.8 0.96 -3.33 - - - 1.73 1.66 - - -0.36 -
-4.06 -0.27 1.55 2.03 2.59 0.15 -4.22 -4.73 -5.66 -7.35 -2.15 -1.25 -5.2 -5.53 -2.84 -5.0
- 1.2 - - - - - - 0.26 - - 0.25 - - 3.5 -
- 1.2 - - - - - -3.39 - - - - - - 3.77 -
- - - - - - - -3.25 - - - 0.01 - - 3.9 -
-4.87 - 1.59 0.48 1.91 2.12 -0.61 -0.02 - - -0.88 -0.28 - - -1.14 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - 2.22 3.05 0.55 -1.88 - - 0.44 -
- -2.19 0.37 1.96 0.36 2.66 0.29 -8.87 - - -0.96 -0.07 - - -1.74 -
- -4.09 - - - - -4.84 -4.67 3.48 2.05 -4.48 -3.0 - - -1.28 -
- - - - - - - - - - - - - - 4.0 -
-6.01 -5.32 -0.01 0.9 -0.45 3.24 -6.03 -7.25 -1.16 0.29 -0.32 -1.48 - -7.35 -3.7 -
-6.14 - 1.41 0.3 1.84 1.04 -5.94 0.97 -0.18 -0.4 -0.45 0.92 - -5.46 -2.39 -
- 3.1 - - - - - 0.81 0.93 -0.6 - - - - 1.64 -
- 0.13 - 1.93 - - - -1.11 0.88 - - - - - 3.14 -
- -2.75 -0.59 -0.26 0.76 0.11 0.96 -3.25 - - 0.08 -1.61 - - 3.03 -
-1.64 -3.41 1.52 1.99 -0.09 2.12 -1.89 - - - - - - - 1.67 -
- - - - - - - - - - - - - - 4.0 -
-0.1 - - - - - 0.64 - - - - 0.31 - - 3.62 -
- - - 0.44 2.53 0.08 - - - - - - - - 2.97 -
- - - - - - - - - - - - - - 4.0 -
- - -1.67 - -1.55 1.31 1.36 - - - - -1.07 - -0.86 3.21 -
-7.94 - 2.11 0.58 2.58 1.0 1.04 -7.48 - - -5.49 -4.1 - -7.92 -3.85 -
- 3.66 - - - - - - - - - - - - 1.76 -
-1.14 -3.47 -3.19 -2.79 -2.35 -1.41 -1.04 -0.29 - - -3.84 -3.3 0.62 1.23 2.91 0.8
- - -0.17 0.18 -0.06 - - - - - - - - - 3.7 -
- - 2.46 1.11 1.28 1.45 0.19 -3.63 - - -2.45 -0.97 - - 0.33 -
- - - 0.99 -0.82 3.13 - - - - -0.23 - - - 1.94 -
- 3.22 - - - - - - - - - - - - 2.73 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
- - 2.53 2.22 -1.0 -1.5 -0.51 -1.52 -4.04 1.08 -0.17 -0.92 - - -3.78 -
- - 0.29 1.21 0.11 2.02 2.12 -2.95 -5.53 -4.25 0.36 0.47 - - -3.23 -
-6.61 2.04 0.26 0.06 0.19 1.93 -1.37 - 0.47 -0.55 -0.58 0.22 - - -1.35 -
- 2.24 1.96 1.48 -0.01 -2.98 - - - - -2.26 -1.37 - - 1.52 -
-11.06 - 1.18 1.14 2.06 0.69 2.36 -5.45 - - -2.26 -1.36 - - -7.34 -
3.06 0.04 - - - - - - - - - - - - 2.73 -
- - - - - - - 1.84 - - - - - - 3.63 -
- - 0.71 -0.13 2.83 -0.37 1.95 -5.6 - - -3.24 0.11 - - -1.05 -
- - - - 0.61 1.06 - - - - - - - - 3.63 -
- -5.91 1.59 1.5 -2.04 1.76 - - -3.6 -1.4 2.12 0.54 - - -2.09 -
-1.24 -2.58 -1.02 1.12 1.43 -0.06 -1.69 1.72 - -0.39 - 0.13 - - 1.86 -
- - - -6.29 - - - 1.64 1.94 3.15 -5.95 - - - -2.74 -
-0.12 3.17 -0.35 1.01 -0.94 -3.33 -1.3 - -2.72 -2.24 -0.3 -0.73 - - -0.99 -
-1.9 3.43 - -0.3 -2.52 -1.09 - - - - - - - -1.83 1.56 -1.86
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
- - 1.81 1.48 0.93 2.54 0.05 -8.67 - - -3.67 -0.41 - - -3.1 -
- - - - - - - - - - - - - - 4.0 -
- - 1.71 1.88 1.42 2.48 -3.42 -4.85 - - - -3.15 - - -0.87 -
-5.21 -6.54 -0.24 0.75 0.53 2.82 1.02 -0.33 -2.78 -3.61 -0.16 -1.21 -4.47 -3.48 -1.47 -3.88
- - 1.16 0.14 1.17 2.14 2.03 -1.63 - - -2.46 0.24 -4.04 - -3.07 -4.17
1.95 2.09 0.39 0.22 1.56 0.73 - - - - - -4.51 - - -0.59 -3.28
- 0.32 - - - -0.13 - - - - - - - - 3.79 -
- -2.09 -1.58 0.52 -2.45 1.47 -0.89 - - -1.96 -1.93 0.04 0.92 -1.76 2.63 -0.79
0.7 -2.07 1.56 0.9 1.0 1.53 - 0.79 - - - - - - 1.44 -
-6.45 -5.21 0.52 1.14 1.26 2.0 0.19 0.61 -3.46 -4.98 -0.49 0.99 - - -1.16 -
-7.85 - 1.86 1.37 2.25 -1.09 0.35 -1.74 -0.11 0.89 -4.78 -3.27 - - -4.15 -
- - 1.77 0.6 2.14 1.46 - - - -1.68 -0.65 - - - 1.57 -
- 3.87 -2.15 - - - - - - - - - - - 0.14 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.