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Heatmap: Cluster_234 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.82 0.61 -0.68 -0.3 -1.18 -1.35 0.63 -0.18 0.36 0.34 0.06 -0.32 0.03 -0.48 -0.32 0.11
1.23 -0.29 -3.1 -3.06 -2.53 -2.14 0.21 -0.08 -0.57 -0.33 0.31 0.25 0.7 0.49 -0.08 1.15
-0.22 -1.99 0.15 -0.13 0.27 0.6 0.05 -1.17 -0.25 -0.11 0.56 -0.13 0.15 0.06 -0.11 0.5
-1.6 -1.84 -1.63 -1.23 -1.0 -0.45 -0.77 0.63 1.74 1.45 -0.05 -0.74 -0.17 -0.25 -0.58 0.29
1.35 0.79 -1.95 -2.35 -1.1 -0.89 0.05 -1.5 -0.19 0.34 0.15 -0.68 0.69 0.26 -0.47 0.55
0.05 -0.05 -1.51 -1.7 -0.86 -0.52 0.36 -0.35 0.74 0.51 0.75 0.54 0.02 -0.18 -0.4 0.19
0.12 0.26 -0.74 -0.4 -0.06 -0.38 1.0 0.69 0.12 -0.12 -0.46 -0.5 0.18 -0.74 -0.28 0.04
0.39 -5.18 -5.14 -5.22 -4.93 -5.79 -3.08 0.52 -7.3 -6.83 -6.47 -4.44 2.16 1.85 0.54 1.77
0.51 -0.46 -0.66 -0.56 -0.09 0.09 -0.38 -0.84 -1.18 -0.43 -0.41 -0.67 0.86 0.83 0.02 1.02
1.38 -1.17 -6.01 -4.1 -2.46 -1.8 -5.57 1.73 -3.86 -5.65 -3.47 -3.79 1.44 1.35 0.19 1.27
1.21 -0.3 -1.92 -2.1 -2.14 -2.23 1.02 -0.29 -0.35 0.12 0.82 0.82 0.07 -0.11 -0.86 0.24
0.86 0.85 -1.93 -2.65 -1.7 -1.12 -0.66 0.03 0.13 -0.46 -0.75 -1.48 0.72 0.55 0.74 0.99
-1.18 0.14 -2.09 -2.96 -0.89 -0.18 -1.65 0.23 -7.19 -5.13 -1.44 -1.02 1.62 1.35 0.76 1.57
0.74 -0.14 -1.24 -1.1 -0.72 0.12 0.59 -0.66 0.19 -0.23 0.37 -0.84 0.28 0.29 -0.1 0.57
-0.59 -0.95 -0.5 -0.61 -0.15 -0.59 0.85 -0.15 0.15 -0.61 0.45 -0.19 0.42 0.31 0.07 0.64
-0.21 -0.64 -3.44 -2.27 -2.65 -2.98 0.94 0.1 1.05 1.19 0.33 0.11 0.2 -0.18 -0.2 0.41
0.99 -1.01 -1.18 -2.04 -0.91 -0.25 -0.31 -1.01 -0.8 0.26 0.8 -0.17 0.68 0.71 0.05 0.57
1.65 -0.12 -0.56 -0.73 -0.2 -0.65 0.01 -0.42 -0.45 -0.32 -0.65 -0.46 0.25 0.09 -0.01 0.32
0.63 0.49 -2.75 -1.99 -1.42 -1.42 0.6 -0.35 0.48 0.73 0.49 0.13 0.11 -0.26 -0.47 0.52
0.07 0.38 -0.99 -0.97 -0.84 -1.14 0.56 0.67 0.7 0.39 -0.56 -0.59 0.38 -0.45 -0.45 0.59
0.68 -0.05 -3.29 -2.87 -2.68 -1.97 0.47 1.09 0.34 0.76 0.23 0.16 0.14 -0.41 -1.99 0.94
-0.39 -1.59 -1.4 -1.03 -2.15 -1.46 0.39 -0.53 0.2 0.71 1.02 0.86 0.39 0.2 -0.25 0.6
-1.65 -1.22 -3.04 -2.89 -2.86 -2.6 -1.9 2.39 1.82 1.87 -1.84 -2.01 -1.51 -1.57 -1.65 -1.1
-1.54 -2.56 -4.66 -4.66 -4.27 -4.85 -3.03 3.09 0.93 1.2 -4.89 -4.07 -0.88 -0.74 -0.57 -0.86
-1.55 -1.34 -2.17 -2.22 -1.53 -1.31 -0.61 1.49 1.4 2.18 -1.33 -0.99 -0.7 -0.9 -0.75 -0.34
0.41 0.16 -0.55 0.01 -0.97 -1.21 0.87 -0.2 0.1 -0.19 0.3 -0.48 0.25 0.05 -0.52 0.5
0.12 0.41 -1.5 -1.62 -0.82 -0.77 0.44 -0.02 0.49 -0.07 -0.23 -0.08 0.56 0.2 0.16 0.59
-0.92 0.32 -1.3 -0.79 -0.53 -0.83 1.52 0.3 -0.03 0.29 1.34 1.46 -3.43 -3.64 -3.78 -2.6
0.67 0.48 -1.73 -1.7 -0.44 -1.05 -0.2 -0.18 0.64 0.48 -0.3 -0.38 0.04 -0.14 0.19 0.86
1.1 0.2 -0.66 -0.98 -0.66 -0.71 0.02 -0.44 -0.23 -0.45 -0.32 -0.3 0.49 0.42 0.07 0.65
0.33 0.06 -1.1 -1.09 -0.39 -0.5 0.18 -0.71 -0.32 -0.05 0.38 0.22 0.61 0.33 0.21 0.46
0.73 0.36 -0.36 -0.0 -0.71 -0.89 0.25 -0.57 -0.26 0.03 0.16 -0.03 0.28 -0.26 -0.18 0.48
0.47 0.7 -1.95 -2.1 -1.69 -1.64 0.7 -0.47 0.05 0.37 -0.06 -0.54 0.51 0.18 0.08 0.94
-0.37 1.13 -1.5 -1.63 -0.88 -0.59 0.53 0.74 1.16 0.92 -0.07 -0.51 -0.72 -0.97 -1.49 -0.35
1.3 -0.04 -1.35 -2.09 -1.15 -1.29 0.08 -0.4 -0.8 -1.32 -0.32 -0.41 0.88 0.62 0.38 1.05
0.74 -0.46 -0.71 -1.98 -0.48 -0.8 0.03 -1.54 -3.48 -1.75 -1.01 -0.57 1.24 0.94 0.39 1.56
0.48 0.82 -3.25 -2.75 -2.1 -1.92 -0.32 0.57 0.96 0.54 -0.07 -0.3 0.49 -0.02 -0.88 0.77
0.73 -0.18 -1.42 -1.58 -0.89 -1.04 0.46 -0.62 -0.19 0.04 0.0 0.22 0.63 0.34 -0.07 0.89
0.4 -0.95 -1.94 -2.35 -2.02 -2.3 0.14 0.13 -0.52 -0.94 -0.16 -0.38 1.19 0.87 0.63 1.33
0.17 -0.36 -0.26 -0.23 -0.38 -0.58 0.6 0.0 0.5 0.38 0.7 0.53 -0.33 -0.53 -1.39 -0.32
-0.89 -0.87 -2.86 -2.86 -1.71 -1.25 -0.37 0.18 1.84 2.18 -0.21 -0.54 -0.71 -0.81 -1.24 -0.43
1.07 -0.29 -2.44 -2.28 -1.68 -1.43 -0.16 -0.03 0.5 0.81 -0.48 -0.16 0.67 0.23 0.01 0.66
0.36 0.63 -0.3 0.39 -0.28 -0.37 0.59 -0.25 0.49 0.06 0.32 0.18 -0.87 -1.08 -1.12 -0.32
-0.84 -0.99 -4.62 -4.57 -3.82 -2.61 -0.86 1.71 2.34 1.92 -1.94 -3.12 -1.26 -1.72 -2.38 -0.63
1.0 0.81 -0.63 -1.31 -0.22 -0.19 -0.08 -0.42 -0.96 -0.77 -0.41 -0.2 0.24 0.13 0.14 0.73
0.38 0.85 -1.12 -1.26 -1.0 -0.5 0.17 -1.07 -0.49 -0.27 -0.6 -0.35 0.54 0.53 0.43 1.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.