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Heatmap: Cluster_138 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - - - - - - - - - -
- - - - - - - - 2.38 3.43 - - - - - -
- - 1.25 1.09 1.05 0.84 1.26 -0.68 -1.49 -1.43 -0.19 1.59 - - - -
-1.7 - -0.3 -0.54 0.83 1.05 2.81 -0.15 - - -1.2 1.01 - - - -
- -4.42 1.99 2.24 0.88 1.33 -3.28 -2.99 -1.77 -3.35 0.11 0.24 -8.0 -7.51 -7.02 -7.12
-0.9 1.29 - - 1.09 2.1 -4.47 - -0.22 1.0 -1.13 -3.23 - 0.02 1.09 -
- - - - - 0.61 - -2.59 1.95 2.27 - - 0.98 0.88 - 0.85
3.12 - -1.31 -1.7 1.69 -1.69 1.53 -5.46 - - -3.44 -4.55 - - - -
-4.57 - 0.74 1.17 1.33 2.88 -5.72 -3.96 -2.45 -4.4 -0.08 -0.22 - -5.23 - -
- - - - - - - - - - - - - 1.62 3.69 -
-2.0 0.2 -1.9 -3.89 -4.09 -1.45 1.98 -0.99 - - 1.93 2.38 - - -1.33 -
- - -7.62 -2.36 0.42 3.16 -3.23 -11.28 -6.46 - 1.71 1.07 - - -5.73 -
-4.15 - 1.79 2.12 0.61 -1.18 -0.13 0.11 -1.39 0.48 0.29 0.25 - - - -
- -1.14 - -1.93 1.9 2.46 1.41 -2.45 -1.66 - 0.03 0.91 - - - -
- -0.72 - - 1.03 3.46 0.23 0.23 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-2.29 - - -3.15 -0.03 -0.71 1.85 1.91 -2.91 -2.85 -2.81 - -1.57 1.42 1.73 -
2.76 - - - 2.36 - - - - - - - - 2.04 - -
-7.09 -2.47 -0.78 -0.69 -0.26 -0.57 - - 3.33 1.53 -2.97 -5.66 - - - -
-1.76 2.17 0.8 0.92 -3.09 -1.41 -1.63 -1.77 0.94 0.99 0.23 0.45 - - - -6.79
-1.33 -1.43 - - -0.61 - - 3.76 -1.18 - - - -0.87 - - -
- - - - - 2.3 1.47 - - - - - - 3.06 - -
- - - - - - - - - - - - 2.15 1.64 2.13 2.03
-2.4 -1.63 -6.18 -5.85 -5.05 -4.04 -2.53 2.34 2.56 1.91 -4.92 -5.61 -3.68 -2.36 - -2.81
0.11 1.9 - - -4.89 - - - 1.08 3.17 - -4.46 - - - -
- - 1.42 1.4 2.31 1.89 -6.0 -4.2 -3.47 -2.22 -1.26 0.26 - - -5.61 -
-1.44 -2.19 2.57 1.6 2.24 0.78 - - - - - - - - - -
3.6 - - - - - - -1.51 - - - 0.71 - - - 0.93
-4.15 - -3.38 -0.8 -0.04 -0.13 3.36 -2.57 - -4.76 -0.55 1.15 - -4.56 - -
-6.08 2.54 -0.7 -0.17 0.79 -0.63 1.91 0.19 -4.09 -2.68 -1.47 -0.46 - -3.9 - -
- - -1.05 -0.72 - - - - 2.69 1.17 - - 1.86 1.35 - -
-4.03 -4.1 -1.85 -1.9 0.07 -0.38 1.75 1.54 - - 1.38 1.93 -3.64 - -1.66 -1.18
- - 0.64 0.92 1.66 1.89 - -4.25 0.42 -2.52 -1.9 -1.59 -1.26 -0.55 0.72 -0.38
-8.95 - -6.57 -5.5 -8.03 - -2.64 1.97 2.02 2.96 -6.49 - - - - -6.37
-10.0 -9.37 -8.1 -7.02 -3.32 0.17 -8.78 -7.54 3.45 1.74 -2.17 -2.09 -10.73 - - -
- - 1.08 -0.7 -1.49 - 0.41 0.99 0.77 0.83 1.86 0.95 - - - -0.83
- 0.82 -1.1 0.82 -0.34 2.33 0.7 -1.42 -3.24 -4.18 1.14 -0.55 -1.3 -3.98 -0.91 -3.01
1.59 - 0.77 1.69 - 0.32 - -1.88 0.93 - - - - - 1.66 0.57
- 3.99 -6.11 - -5.98 -4.13 - - - - - - - - - -
- - 1.33 -0.45 0.57 1.51 2.63 -0.63 - - - -0.8 - -1.55 - -0.58
3.49 - - - - - -2.29 -3.27 -1.04 - - -1.05 - 1.79 - -
- 1.39 1.21 1.54 1.57 1.82 -1.34 - - - - - - - 0.35 -
- - - - - - - - 4.0 - - - - - - -
- -6.08 -3.11 -3.0 2.16 1.67 -5.85 -5.14 -0.01 -0.82 1.96 1.37 - - - -
-0.78 -1.57 -2.61 -2.6 -3.35 -3.09 -3.0 2.75 0.08 -0.06 -5.8 -2.94 -0.09 0.47 1.24 -0.3
-5.55 -8.83 2.64 2.05 1.39 1.45 -5.23 -6.83 -6.35 -7.62 -4.49 -2.96 -7.35 -5.86 - -7.47
- - - - - - - 2.46 2.04 2.26 - - - 0.69 - -
- -2.11 0.27 0.25 1.29 1.23 3.07 -6.2 - - -2.87 - - - - -
-6.2 -3.37 0.4 0.83 0.15 0.92 -0.01 -1.52 0.29 0.75 1.53 1.11 -3.49 -2.59 - -2.03
- - - -4.44 - -3.81 - - 2.06 2.92 1.09 -0.13 -2.85 -3.95 -0.88 -1.39
-3.2 - 1.01 2.33 1.43 0.3 1.8 -3.37 - - -1.21 -0.84 -2.66 -2.76 - -3.79
- - 0.9 0.99 -1.09 2.3 -3.48 - -2.21 -0.57 1.79 1.23 - - - -
-1.11 - -0.31 - -0.18 -0.35 2.82 -2.97 - - - - 1.6 1.5 - -
-2.08 - -1.21 - 1.23 -1.24 3.54 -2.3 - - -0.52 - - - - -
- - 1.59 1.18 1.49 0.44 2.66 -5.39 - - -4.07 - -2.82 - - -
-1.6 -4.2 0.41 0.07 1.09 -0.16 2.97 -1.85 - -5.36 -0.74 0.1 -4.07 -1.47 - -
-0.53 -0.04 0.25 0.58 1.02 1.93 0.91 -1.45 -5.21 -4.79 0.32 0.26 -1.44 -3.86 -1.3 -2.34
-5.4 -1.56 -0.63 -0.06 0.84 0.48 -1.45 -1.75 1.76 0.97 0.61 1.63 -3.72 -3.81 - -3.84
0.6 - - 1.16 - 0.79 - 2.25 1.41 - - - - 1.64 - -
-5.55 1.09 0.41 0.68 1.27 -0.01 1.5 0.5 - -2.8 0.45 0.79 - -4.94 - -
0.94 3.62 - -1.84 - -0.21 - - - -0.54 - - - - - -
-4.86 2.36 -2.98 -5.45 -3.13 -0.98 -4.28 -2.24 1.73 -0.05 2.04 0.49 - -5.96 - -
-4.89 1.96 -0.19 -0.88 0.05 -0.94 -1.94 2.25 -0.5 0.09 -0.36 0.33 - - -2.19 -4.29
-5.36 -3.11 2.13 0.86 1.83 1.0 0.72 -4.13 -6.02 -6.63 -1.81 1.03 -7.68 -8.78 -5.12 -6.22
1.95 - 1.76 - 1.89 - 2.09 -0.31 - - - - - - - -
- 0.96 2.09 1.2 2.15 0.83 - - -0.73 - -1.64 - - -1.49 - -
-0.81 -2.6 -0.7 1.29 2.13 1.71 -0.3 - -1.37 - 1.34 - - - - -0.3
- - 1.23 2.0 1.12 2.76 - -8.87 - - -1.13 -2.04 - - - -
- -6.27 0.54 2.2 1.61 2.67 -3.75 -9.95 -4.48 -3.52 -2.87 -2.97 - - -4.42 -
- 3.86 - - - - - - - - - - - - 0.6 -
- - - 2.02 - - - - - - - - 2.01 - 2.98 -
- - - -1.45 -0.07 1.64 1.38 -0.36 0.38 -1.15 2.05 0.36 - - - 0.0
- -2.56 - - - - - -4.63 2.04 2.21 2.47 0.6 - - - -
- - -0.11 3.42 0.79 0.03 -3.42 -5.14 - - 0.19 -1.33 - - - -
-2.2 3.4 - - - - 0.12 -3.0 -1.3 - 0.79 -1.31 - - -0.03 -1.12
-1.18 -1.54 0.97 1.46 2.49 1.36 - -6.89 -2.59 -1.22 -0.33 -0.44 - -2.39 - -
-1.68 -2.34 -1.06 0.29 -0.08 0.43 2.28 -1.96 1.94 -0.16 0.08 -0.75 - -7.31 - -
-2.52 -2.27 -3.73 -1.81 -0.27 -3.76 -3.4 -6.38 2.4 1.15 1.4 1.64 - -1.29 -0.84 -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.