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Heatmap: Cluster_122 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.17 1.86 -1.03 -1.45 -0.24 0.51 0.52 -0.6 -2.88 -5.82 -1.66 -2.57 1.05 0.91 -0.54 0.52
1.54 -2.1 -1.13 -2.27 -1.3 -1.35 -0.75 -1.06 -1.31 -1.49 -0.72 -0.93 1.39 1.27 0.8 0.73
0.43 -2.45 1.59 0.9 0.41 1.0 -1.0 -2.91 -1.7 -2.59 0.27 0.11 -0.15 -0.48 -1.36 -0.2
-3.86 3.78 -7.64 -6.14 -4.16 -4.87 -2.56 0.61 -6.74 -7.0 -4.44 -5.17 -2.82 -3.13 -6.76 -3.95
0.38 -0.47 -1.04 -1.15 -0.56 0.19 0.4 -0.97 -0.53 -0.11 0.52 0.16 0.46 0.43 -0.02 0.6
0.77 -0.02 -1.28 -1.78 -1.41 -1.31 0.08 -0.16 -1.7 -1.58 -0.07 0.17 1.0 0.88 0.69 0.75
0.47 0.28 -1.51 -3.63 -2.04 -2.67 -0.29 -1.59 - - -4.27 -2.2 1.61 1.76 1.37 1.1
-2.32 - -4.34 -6.77 -4.44 -4.45 -2.36 -0.73 - - -3.98 -2.84 2.18 2.46 0.9 1.46
0.33 0.61 -1.28 -1.04 -0.32 0.29 0.55 -2.09 0.45 0.54 0.85 0.44 -0.52 -0.3 -0.85 -0.86
-0.59 -0.8 -0.12 0.06 0.02 0.22 0.61 0.03 -0.03 0.33 0.48 0.27 -0.31 -0.21 -0.31 -0.38
2.17 2.06 -2.83 -3.38 -3.6 -2.74 -1.04 -2.0 -0.43 -1.95 -0.25 -0.83 0.29 -0.42 -0.37 -0.02
-1.5 3.29 - - - - - -8.38 - - - - 1.04 1.21 -0.52 -0.36
-0.18 -0.25 -0.49 -0.22 -0.29 -0.07 1.41 0.26 -0.57 -0.52 0.36 -0.49 -0.11 0.15 -0.79 0.11
-5.84 -4.18 -1.12 -0.26 -0.27 0.32 -2.07 -3.15 - -6.99 -3.79 -4.06 1.94 1.43 -0.65 2.29
0.66 1.18 -1.7 -1.62 -0.5 -0.22 0.41 -0.1 0.56 0.79 0.2 0.26 -0.67 -0.68 -1.24 -1.05
-0.71 -2.95 -3.04 -2.81 -2.63 -2.39 0.56 -0.08 0.43 0.49 0.95 -1.25 1.01 1.05 0.85 0.32
-2.63 - -7.31 - -5.97 -5.6 -7.25 -2.95 - - - - 2.08 2.5 1.91 1.02
-1.4 -1.95 -0.11 0.24 -0.3 0.52 1.64 -1.15 -2.79 -1.25 0.32 0.43 0.87 0.27 -1.8 -0.05
-1.54 -1.7 -2.69 -2.28 -3.36 -2.36 0.41 2.13 1.99 1.71 -0.35 -1.91 -2.33 -2.11 -3.74 -2.52
-1.9 -0.83 -2.65 -2.77 -3.38 -3.13 -2.09 0.32 0.67 0.38 -4.19 -3.71 1.56 1.65 0.94 1.1
0.78 -0.47 -1.7 -1.52 -1.29 -0.67 0.16 -0.6 0.6 0.63 0.64 0.22 0.16 0.17 0.07 0.02
1.23 -1.04 -2.5 -2.28 -2.78 -2.8 0.9 0.4 0.18 0.19 0.16 0.17 0.38 0.32 -0.09 0.38
0.29 -2.28 -2.08 -3.21 -2.22 -2.14 -0.75 0.27 0.22 1.57 -1.07 -2.13 1.15 0.94 0.65 0.52
-0.81 -2.61 -2.97 -2.46 -1.52 -1.83 -1.51 -0.72 -1.68 -2.52 -1.2 -2.81 1.98 1.57 1.61 1.21
-0.19 -3.66 -3.89 -4.56 0.65 -0.28 -0.78 -0.82 - - - - 2.11 1.51 0.7 1.39
1.22 -3.42 -2.8 -2.19 -3.41 -1.15 -0.1 1.13 -1.82 1.12 -2.26 -2.73 1.34 0.55 -0.24 0.91
1.53 -2.12 -0.8 -1.02 -0.77 -0.63 0.37 -0.15 -0.18 0.05 0.2 -0.16 0.42 0.44 -0.22 -0.19
-0.21 -0.06 -0.77 -0.92 -0.22 -0.24 0.17 -0.77 -1.07 -2.27 -0.11 -0.09 1.08 0.93 0.51 0.71
0.95 -1.78 -2.8 -2.35 -2.28 -1.72 -0.11 -1.41 -0.42 0.45 0.44 -0.08 0.97 0.86 0.58 0.95
-0.99 -2.6 -1.62 -2.39 -1.41 -1.69 0.12 -0.49 0.16 0.06 -1.19 -1.62 1.37 1.44 0.05 1.62
-0.06 -1.84 -2.41 -2.46 -2.25 -2.26 1.02 0.35 -0.65 -1.11 0.36 -0.62 1.17 1.1 0.71 0.69
-0.65 -0.85 -0.92 -0.14 -1.1 -1.36 0.95 0.67 -0.6 -0.8 0.25 -0.22 0.84 0.84 0.18 -0.03
-0.16 -0.64 -1.92 -2.75 -2.06 -2.86 -1.87 1.98 1.76 1.46 - -4.22 -0.03 -0.28 -0.43 -0.5
0.09 -1.23 -2.0 -1.64 -1.35 -0.9 0.63 -0.05 0.09 0.75 0.92 0.67 0.25 0.16 -0.21 0.15
2.75 0.63 -1.56 -1.3 -1.92 -0.62 0.07 -0.98 -0.4 -1.28 0.27 -0.92 -1.16 -1.18 -1.03 -2.32
0.76 -0.32 -2.08 -2.73 -1.89 -1.78 -0.74 1.42 1.01 1.06 -0.8 -0.68 0.02 0.14 -0.06 -0.15
0.06 -0.35 -2.19 -1.57 -0.65 -0.97 0.72 -0.22 -0.77 -0.95 0.99 0.08 1.02 0.39 -0.59 0.86
0.51 -0.89 -0.35 -0.48 -0.32 -0.04 -0.22 -0.55 -0.34 -0.55 0.09 -0.11 0.48 0.62 0.65 0.32
-1.15 -2.43 -2.56 -2.88 -2.87 -2.43 0.69 -0.24 0.18 0.05 0.02 -0.69 1.21 1.34 1.16 0.47
0.11 -0.26 -0.62 -0.02 -0.09 0.17 0.55 0.14 -0.06 -0.28 0.6 -0.01 -0.11 -0.12 -0.35 -0.16
-4.86 - -5.51 -5.49 -5.12 -4.86 -3.46 -2.21 - - - -7.25 2.43 2.46 1.43 0.97
0.07 -0.05 -1.75 -2.61 -1.25 -1.35 0.47 0.96 0.07 -0.63 -0.43 -1.15 0.6 0.97 0.49 0.7
1.24 -0.21 -0.55 -0.18 -0.51 0.19 0.17 -0.24 0.07 -0.21 0.01 -0.76 0.14 0.19 -0.48 -0.11
-2.7 0.2 -0.86 -0.62 -4.57 -3.83 -0.02 1.35 1.22 0.62 -0.88 -3.5 0.55 0.71 0.16 0.19
-0.51 0.93 -2.43 -2.5 -1.23 -0.37 -0.18 0.17 0.79 -1.07 0.13 -0.3 0.81 1.21 -0.52 -0.09
0.38 -0.46 -2.96 -5.18 -2.47 -2.55 -1.65 0.55 0.43 2.04 -2.11 -2.03 0.63 0.86 0.23 0.29
-0.41 -1.01 -3.25 -2.93 -1.97 -2.01 -1.25 1.12 2.33 2.08 -2.02 -2.43 -0.84 -0.8 -2.03 -1.42
-0.76 0.32 -1.28 -0.95 -0.9 -0.84 0.61 0.95 1.54 1.6 0.32 -0.63 -2.05 -2.07 -3.0 -2.09
-0.49 -1.35 -1.24 -0.59 -0.77 -0.68 1.33 -1.0 -1.87 -1.61 1.23 1.64 0.13 0.01 -0.9 -0.16
0.62 -0.67 -1.32 -1.51 -1.42 -0.85 0.75 0.27 -0.11 -0.09 0.14 -0.25 0.59 0.56 0.1 0.48
-3.87 -3.48 -8.11 -7.87 -7.22 -5.65 -6.23 1.87 2.73 2.41 -5.91 -7.12 -4.29 -4.74 -5.84 -4.53
0.24 -1.22 -0.85 -0.93 -0.53 -0.2 0.82 0.5 -1.09 -0.4 -0.38 -1.33 0.8 0.77 0.61 0.26
-0.64 -0.65 -0.82 -1.27 -0.22 0.07 0.83 0.6 -1.26 -3.24 0.6 -1.58 1.46 0.36 0.51 -0.48
0.7 1.06 -4.82 -3.72 -4.01 -4.18 -0.76 0.81 1.15 0.81 -1.61 -2.41 0.99 0.55 -0.61 0.17
1.78 1.28 -1.8 -1.75 -2.08 -2.05 0.38 -0.48 -0.42 -0.55 -0.04 -0.76 0.14 0.38 -0.51 -0.07
0.07 -2.95 -1.01 -0.0 0.41 0.43 -0.24 1.47 0.5 0.24 0.34 -0.23 -0.5 -0.55 -0.78 -1.53
0.74 0.35 -1.13 -0.8 -0.44 -0.03 0.39 -0.13 -0.11 -0.87 -0.17 -0.71 0.46 0.52 0.21 0.19
0.17 0.57 -0.29 -0.59 -0.31 0.31 0.47 0.02 -1.4 -1.31 -1.09 -0.9 0.83 0.77 0.51 -0.37
-0.96 -1.15 -2.28 -2.59 -1.64 -1.1 0.2 1.03 0.01 0.24 0.01 0.21 0.92 0.84 0.17 0.6
0.17 -1.26 -1.14 -1.4 -0.96 -0.12 -0.28 -1.15 -0.43 0.47 1.11 0.44 0.53 0.59 -0.13 0.51
-0.24 2.49 -1.81 -1.44 -2.49 -0.7 -1.72 -1.62 1.26 1.74 -2.36 -2.38 -1.21 -0.98 -2.73 -1.96
1.03 -1.26 - -0.78 - -2.36 0.0 -0.24 - - -3.0 - 1.51 1.48 1.48 1.23
1.38 -1.6 -3.51 -3.43 -2.62 -1.7 -0.57 -1.52 -1.67 -1.71 0.12 -1.17 1.58 1.28 0.85 1.01
0.79 3.14 -2.98 -2.45 -2.21 -2.82 -4.47 -2.35 -2.86 -4.13 -3.51 -5.2 0.57 -0.03 -0.91 0.31
- -1.6 -1.24 -1.4 -1.48 -1.54 -0.17 -0.65 - - - - 1.6 1.91 1.64 1.44
-1.49 1.69 -5.29 -4.13 -3.91 -3.74 -0.22 1.29 0.6 1.44 1.09 -1.59 -0.34 -0.5 -2.58 -0.88
-1.29 0.34 0.08 0.69 -0.21 0.14 0.71 -0.02 0.75 0.51 0.72 0.28 -1.89 -1.76 -1.8 -2.0
0.42 -0.01 0.32 0.99 -0.29 -0.53 -0.31 -0.65 -0.3 -0.61 0.98 0.64 -0.28 -0.29 -1.97 -0.75

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.