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Heatmap: Cluster_3 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - - - - - - - - 4.0 -
-0.92 3.69 - - - -3.17 - - - - - - - -0.35 0.72 -
0.4 - - 0.23 - - - - - - - - 3.0 0.9 - 1.87
- - 0.5 - -1.68 - - - 0.33 - 1.43 0.74 - 0.59 2.07 1.56
-9.64 - -0.12 0.32 0.72 -0.86 3.22 -3.92 -4.26 -4.74 0.33 -0.16 - -7.02 - -
- - - - - - - - - - - - - 4.0 - -
-7.15 -7.1 2.25 2.32 1.77 1.38 -6.87 -6.93 -7.63 -7.42 -3.57 -3.34 - -11.18 - -9.62
- 1.37 -0.36 - 2.09 0.61 -1.03 -4.03 - - - - - 1.79 1.52 -
- - - - - - - - - - - - - - - -
1.01 - - - - - - - - - - - - 3.81 - -
- -1.72 - - - - -3.46 - 2.9 2.94 -2.13 -2.24 - - - -
- - - - - - - -0.32 - - 1.44 - - - 3.64 -
-11.13 -5.07 0.08 1.54 0.15 2.17 1.88 -1.71 -0.48 -1.73 -1.01 -0.17 -8.44 - -5.88 -8.56
0.93 2.73 - - - - -0.79 - - - - - 2.79 - - -
- - - - - - - - - - - - - 4.0 - -
-2.69 -0.46 0.21 0.14 0.92 2.1 -0.46 0.7 0.41 -0.12 - - 0.12 - - -0.01
-1.29 - 0.16 -0.09 -1.31 1.13 -0.52 1.94 1.49 0.23 - 0.16 - 0.38 - -
- - - - - - - - - - 0.14 1.04 3.38 - - 1.26
- - -1.23 1.81 - - - - - - 2.79 2.36 - - - -
- - -1.75 -2.27 -0.94 0.79 -2.42 -0.86 - -2.13 - - 2.97 1.55 - 0.58
- - - - - - - - - - - - - - - -
0.89 3.77 -5.52 -5.2 - -4.56 - -3.41 - - - -4.97 -2.61 - -2.63 -
- 4.0 - - - - - - - - - - - - - -
-1.36 -1.36 -2.18 -0.27 0.65 1.64 - - 0.38 0.02 1.56 0.54 -1.27 -0.36 -0.29 -0.39
- - - - - - - 1.67 - - - - 3.68 - - -
-1.96 0.06 - - 0.08 -0.24 0.51 0.62 - - 0.46 0.36 0.4 0.89 0.37 1.44
- - -1.42 -1.54 2.97 -0.52 2.61 -4.37 - - -3.2 -2.31 -1.97 - - -
3.93 -3.98 -2.0 -3.78 -4.58 - - - - - - - - - -1.82 -3.92
- - - - - - - - - - - - - - - -
- - -4.18 - - -2.22 - 2.66 2.17 1.66 - - - 0.44 -1.3 -
- -2.46 0.38 -0.29 2.31 1.84 -0.15 -0.66 0.13 - -0.7 - 0.01 - - -0.14
-4.38 2.77 -3.99 -2.07 -3.86 -0.25 - -0.32 1.36 1.27 -0.82 0.28 -3.66 -4.76 -2.69 -3.79
- -2.19 0.15 0.49 -2.05 -1.62 - 0.8 2.37 1.94 - -2.59 -0.26 -2.36 - -0.39
- - - - - - - 3.02 2.64 - 0.73 - - - - -
- - 2.09 1.32 2.22 1.83 -0.16 -6.27 - - -4.88 -3.61 - - - -
4.0 - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-6.52 -0.79 1.32 1.47 1.36 1.42 1.53 -3.29 -1.5 -1.26 -0.63 -1.11 -5.44 - - -
- 0.56 - - - - - - - - - - - - 2.91 2.81
-1.05 -0.13 0.91 0.13 -0.51 -0.15 0.78 0.01 1.35 0.33 0.37 0.26 -3.25 -3.34 -1.27 -1.37
- - 0.66 -0.35 -0.75 1.71 -5.26 -2.59 2.02 0.74 -0.47 1.43 - -1.2 - -
0.22 - - - - 2.99 - 1.95 - - - 1.59 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - 2.25 - - - 3.49 - - - -
- - 2.53 0.07 -0.19 2.41 - - - - - - - - 1.58 -
- - 1.06 - -0.15 -0.28 0.06 -1.16 - 1.0 1.04 -0.66 0.63 - 1.61 0.51
0.26 - 0.79 0.13 -0.49 1.09 - -4.7 -0.56 -0.3 2.57 0.2 -3.31 -5.4 -1.75 -3.43
- - - - - - - - - - - - - - - -
- - - - - - - - -0.68 - - - 0.62 1.11 2.59 2.5
0.51 - 0.81 0.25 1.6 0.53 - - 0.53 -0.83 2.12 -0.31 - - - -
- - 1.68 1.68 2.15 1.68 -1.82 -1.92 -1.85 -3.8 -0.95 -1.54 -2.57 - - -
0.4 - - - - - 1.63 - - - 2.02 2.91 - - - -
-5.57 -6.9 1.44 2.24 2.3 1.18 -0.71 -5.06 -2.99 -3.41 -1.66 -2.64 - -5.55 - -
- - - - - - - - - - - - - - - -
-5.4 -5.75 1.1 2.18 1.47 1.89 -2.31 -3.52 -3.43 -3.33 0.34 -0.18 -4.01 -5.33 -4.26 -5.36
-1.76 -4.09 1.27 0.5 1.46 1.75 -2.47 -1.49 - - -1.64 -2.95 1.49 -0.06 -0.65 -1.75
-3.4 - 1.4 1.24 0.36 1.26 2.57 -1.19 -1.82 -2.98 - -4.63 - -3.37 -2.31 -3.41
-1.59 - 2.8 1.51 0.92 -0.03 -2.1 -2.7 - -2.34 -1.3 -2.41 0.48 - - -1.23
1.3 2.5 - - - - - - - - - 2.98 - - - -
0.72 0.54 - - 2.0 1.11 -1.12 0.21 - - - 0.13 1.46 0.37 - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - 3.12 1.38 - - - - - - - 2.23 - -
- 0.67 - - 0.38 - 2.65 - - - - - - - - 2.77
- - - - - - - - - - - - - - - -
- -4.3 3.25 2.68 - - - - - - - - - - - -
- - - -0.35 -1.14 - - - - - 2.8 2.47 - -0.46 0.61 -
-1.91 -1.12 0.64 0.48 0.67 3.06 -4.07 -5.51 -5.34 -2.79 -0.14 0.23 -8.74 -7.84 -6.18 -5.6
0.06 -0.6 1.68 1.22 0.54 1.38 0.77 -0.77 -0.06 -1.33 -0.26 -2.12 - - - -
- - - - - - - 4.0 - - - - - - - -
1.71 0.86 -0.02 -2.83 -0.28 0.89 -1.29 0.53 -0.97 -0.51 0.86 1.02 - -2.39 - -
- - - - - - - - - - - - - - - 4.0
-0.65 0.81 -1.56 -2.55 1.25 0.54 0.3 0.58 -0.18 -2.15 0.25 -0.01 -1.96 0.41 -0.99 0.21
- - - - - - - - - - - - - - - -
0.15 0.15 0.58 0.75 1.13 0.16 2.3 -1.85 -1.68 -1.14 -1.59 -2.69 -1.67 -2.45 - -1.48
- - -0.89 -2.14 -0.77 -2.5 -3.15 -1.24 -1.88 - -1.79 -0.89 -0.57 -0.08 3.41 -0.69
- - - - - - - - - - - - - - - -
- - 0.82 1.43 1.91 0.58 1.99 -5.74 -5.06 -5.38 0.62 -0.52 - - - -
1.55 0.68 -0.5 -0.72 0.06 -1.03 1.46 1.89 - - -0.24 -0.5 -2.83 -2.92 -2.85 -2.37
- -1.89 -0.17 -1.09 1.44 1.32 2.1 -3.65 - - - -2.15 0.14 0.6 -0.88 0.48
-2.54 2.52 - - - - - - 1.34 0.21 1.96 -0.67 -0.35 -1.44 - -0.47
3.64 1.82 - - - - - - - - - - - - - -
2.08 2.4 -3.29 -2.95 -3.17 1.81 -2.38 -0.21 - - - -2.71 - -0.48 - -0.51
- - - - - - - - - - - - 2.85 0.76 2.83 -
-5.43 - - - - -2.28 -2.92 3.94 - - - - - -1.76 - -
- - - 4.0 - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- - 0.97 -0.0 1.9 -3.69 3.19 -3.37 - - - - - - - -
-3.56 -2.31 0.39 1.68 2.58 -1.82 -1.87 -1.22 -2.22 - -0.31 -0.64 -0.28 -1.96 - 0.59
2.89 2.88 -3.81 -3.03 -2.32 -1.14 - - - - -2.73 -5.85 - -5.48 -2.71 -
- - - - - - - - - - - - - - - -
0.4 - - - - 2.3 0.65 - - - 3.03 - - - - -
- 3.54 - - - - - -0.61 1.5 -0.25 - - - - - -
- - 2.37 2.39 0.13 1.2 -0.67 -0.1 - -2.83 - - - -2.61 - -1.67
-7.31 0.88 -4.32 -4.04 -2.88 -2.5 -0.36 0.78 -0.19 0.07 2.02 2.39 - - - -
- 3.93 - - - - - -0.43 - - - - - - - -
3.15 - 0.48 1.3 -0.78 0.58 - - - - - - - -1.42 -0.35 -
-1.9 -1.54 - - - - - -1.84 2.69 2.69 -2.38 - - -1.39 0.68 -
-1.92 -1.73 -0.52 -0.39 -0.31 -1.42 0.77 -0.45 -4.93 -2.55 2.62 2.0 - - - -
0.04 0.77 0.11 1.44 -1.35 1.81 0.17 0.19 - - - - - -0.66 1.41 -
-3.48 -2.96 -0.97 0.79 -0.28 1.07 0.06 -2.37 0.02 0.42 2.64 -1.51 -3.14 - -2.16 -3.26
-1.78 -2.13 1.86 2.42 0.36 1.17 -2.21 -2.51 -4.48 -2.89 0.18 0.29 -6.13 -5.23 - -6.26
- - 3.02 - - 2.98 - - - - - - - - - -
-6.43 - -0.05 -0.08 0.15 1.08 -1.32 1.8 -7.07 - 1.22 2.2 -5.73 -5.82 - -
- - - - - - - - - - - - - - - -
- - 0.85 2.2 0.96 2.83 - -0.85 - - - - - - - -
-2.36 - -1.57 -0.24 -0.44 0.39 -0.51 0.7 - - - - 2.46 1.25 -0.27 0.63
0.75 2.68 -4.59 - -3.46 -2.3 -5.26 2.37 - - -4.91 -3.43 -1.1 -1.08 0.1 -2.22
- - 2.17 1.33 0.15 0.1 -5.97 -5.64 -0.48 -1.67 1.45 1.49 - - -2.42 -
- - - - - - - - - - 2.4 2.29 - 2.55 - -
- -1.15 1.37 1.71 2.35 -0.53 - -0.01 - - -1.4 - - - 0.79 -0.31
0.4 -0.61 - - -0.34 -0.47 -0.55 2.5 - - -0.73 1.16 1.44 -0.65 - -
- - - - - - 4.0 - - - - - - - - -
1.37 - - 0.95 - - - - - - - - 3.52 - - -
- 0.91 - - - - - - - - - 1.32 2.6 - - 2.47
-3.75 -4.77 1.38 2.16 2.0 1.99 -1.11 -5.75 -5.15 -5.87 -3.08 -3.18 - -5.09 -4.02 -
- - -1.72 -1.38 - - - - - - - - 1.77 2.9 2.16 -
- -2.88 3.02 1.81 1.21 0.55 -2.9 - - - - -1.64 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.