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Heatmap: Cluster_66 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-3.26 -7.47 1.19 0.71 1.15 1.54 0.21 -1.12 - - 0.92 1.44 -3.0 -2.29 -3.44 -2.32
-2.52 -5.76 1.82 1.05 2.34 1.18 - - - - -1.34 -1.12 -1.57 -1.66 -2.18 0.19
-0.12 0.84 -1.94 -1.53 -1.72 -0.98 -0.53 -0.42 0.1 0.16 0.21 0.07 0.54 0.39 -0.6 1.39
-3.18 -2.78 1.4 1.74 1.17 1.44 -2.18 -3.27 -0.63 -0.04 0.26 0.68 -7.6 -5.74 -6.3 -4.77
-2.69 -2.59 1.05 1.63 1.69 2.29 -2.5 -6.12 -2.93 -1.55 -0.7 -0.24 -4.72 -5.93 -3.99 -2.69
-2.78 -2.42 1.72 1.41 0.86 1.42 -1.89 -2.78 -0.96 -0.34 0.86 0.01 -3.12 -2.91 -2.55 -1.82
-4.09 - 2.24 1.45 1.14 0.72 -3.04 -6.28 - -7.04 -2.61 -1.14 -0.37 -0.18 -0.06 0.3
-2.76 -1.33 0.62 0.49 0.86 1.61 -2.31 -3.63 -3.09 -2.36 0.13 0.29 -0.55 0.06 0.51 0.68
- -2.23 - - - -0.67 1.15 0.34 - - 0.05 0.26 1.28 0.76 2.25 -0.85
-0.46 -0.53 -0.26 0.47 0.46 0.66 -0.03 -0.45 -0.57 -0.47 0.88 0.68 -0.67 -1.09 -1.29 0.42
-0.83 -2.7 1.17 1.51 1.01 2.1 -1.56 -3.3 -3.57 -3.34 0.37 0.4 -3.27 -2.85 -3.08 -1.88
-0.87 -1.53 1.03 0.84 0.56 1.54 -0.57 -1.12 -1.36 -1.11 0.35 0.06 -0.85 -0.92 -0.88 -0.07
-0.35 2.52 -0.47 -0.05 -1.25 0.51 -5.19 -0.12 1.34 1.06 -3.72 -2.73 -4.8 -4.08 -7.53 -4.54
-2.74 -3.0 -0.01 0.62 0.78 1.41 -2.26 -3.11 -0.4 0.38 1.72 1.33 -2.81 -2.85 -3.12 -2.18
-3.88 -3.25 1.7 1.63 1.21 2.01 -1.07 -2.37 -6.75 -6.69 0.1 -0.05 -3.61 -3.4 -3.05 -3.25
-3.16 -4.47 1.6 1.62 2.28 1.34 -3.55 -3.26 -3.29 -2.31 -0.55 -0.09 -4.41 -4.97 -4.58 -3.22
-0.6 -1.34 0.38 0.7 -0.32 -0.12 0.36 -0.3 -0.48 -0.3 1.09 0.27 -0.78 -0.47 -0.85 0.57
-2.7 -2.71 0.06 0.04 0.24 1.65 -2.39 -2.74 -4.37 -3.67 -1.39 -0.94 0.71 1.04 1.24 0.92
-2.28 -3.51 1.07 0.93 1.49 1.76 -3.43 -3.04 -2.25 -2.41 -0.65 -0.11 -0.62 -0.68 -0.14 0.18
- - 0.63 0.25 - - 1.6 0.02 - - -1.55 - -1.38 -0.47 2.41 1.31
-1.64 2.0 0.34 0.6 -0.36 -0.12 0.44 -2.6 -1.27 -1.98 1.54 1.03 -5.45 -6.27 -6.7 -4.68
-3.27 -3.57 0.13 0.51 -0.91 -0.89 0.8 0.4 -0.87 0.2 1.32 -0.34 -0.93 -1.15 -0.07 1.17
-5.87 -4.61 1.62 1.85 1.71 1.87 -1.67 -2.61 -5.92 -3.81 -0.9 -0.6 -3.57 -3.36 -2.33 -2.27
-3.94 -2.95 0.78 0.83 1.88 1.76 -2.7 -2.39 -2.72 -2.37 -1.17 -0.83 -0.53 -0.1 0.14 -0.28
-1.6 1.37 1.05 1.07 0.13 2.19 -2.32 -4.5 -7.83 -5.4 0.6 0.31 -7.06 -7.35 -2.56 -4.1
-2.04 -5.88 0.54 1.55 2.03 2.76 -4.36 -4.4 - -4.22 -4.18 -2.03 -6.31 - - -4.43
-3.02 -1.34 -0.71 0.01 1.01 2.09 -2.34 -3.22 -1.65 -1.19 1.47 1.34 -2.68 -2.13 -1.74 -0.88
-1.93 -2.25 0.96 0.79 0.75 0.84 -0.23 -0.54 -0.47 -0.3 0.61 0.81 -1.83 -1.47 -0.63 -0.44
-7.07 -3.12 1.61 1.1 1.67 1.92 -3.16 0.18 -4.04 -3.49 -0.69 0.02 -6.75 -9.43 -1.66 -1.56
-3.99 -4.18 3.07 2.32 -2.86 -2.43 -4.54 -2.51 -4.41 -6.28 -6.57 -5.76 -2.06 -2.51 -0.6 -0.33
- -3.96 - - - - - 3.98 - - -3.16 -4.26 - - - -
-4.3 -4.46 1.04 0.94 1.3 1.77 -2.56 -2.53 -1.04 -0.31 0.35 0.29 -1.94 -1.65 -0.42 -0.73
-5.91 -8.66 -2.57 -2.62 0.58 2.61 -2.32 -5.31 -1.69 0.38 1.27 0.72 -2.04 -2.09 -0.65 0.06
-3.5 -3.95 1.7 1.91 1.37 1.88 -3.39 -3.73 -2.5 -1.73 -0.52 -0.11 -4.03 -4.25 -3.77 -3.12
-2.69 -1.6 1.31 0.54 0.84 1.08 -0.22 -0.63 -0.99 -2.01 0.67 0.82 -1.56 -0.84 -0.98 -0.6
-1.97 -2.94 -0.68 -0.78 0.25 0.65 0.2 0.05 1.66 1.35 0.82 0.41 -3.15 -2.83 -2.41 -2.15
-1.95 0.55 1.69 1.63 0.07 1.37 -1.15 -1.43 -0.43 -0.6 -0.69 0.1 -3.53 -3.58 - -2.19
-0.31 -2.44 0.52 0.97 0.88 1.07 1.03 0.99 -5.42 -3.61 0.21 -0.15 -2.37 -1.73 -0.99 -1.04
-1.01 -0.48 1.59 0.7 1.15 1.49 -1.82 -0.37 -1.07 -0.44 -0.84 0.05 -3.24 -2.49 -0.69 -1.51
-3.89 -6.83 0.98 0.78 1.79 3.05 -1.52 -8.88 - - - -4.62 - - -3.32 -
-0.86 -0.62 0.88 1.49 0.25 0.78 -0.03 -1.23 -0.88 -0.42 0.83 0.1 -1.48 -1.66 -1.53 -0.55
-0.94 -0.44 0.03 0.69 0.19 0.85 -1.15 -1.24 -0.44 0.37 1.5 1.49 -2.93 -2.79 -2.85 -2.21
-1.7 -2.06 1.73 2.1 0.81 1.05 -0.4 -1.19 -2.08 -1.73 -0.01 -0.12 -4.14 -3.98 -3.06 -2.82
-0.97 -2.21 0.64 0.8 0.63 0.73 -0.21 -0.65 -0.74 -0.29 1.47 1.16 -2.72 -2.77 -1.88 -1.88
-1.9 -0.92 0.8 0.44 1.79 1.95 -4.22 -2.31 -4.28 -3.15 -1.63 -1.24 -1.21 -0.71 0.59 0.07
-1.58 -2.55 2.3 1.55 0.35 0.18 -5.52 -5.97 -0.94 -1.71 -2.46 -0.99 -1.1 -0.24 0.12 0.36
0.38 -0.43 -1.05 -0.53 -0.55 0.64 0.78 -0.58 - -5.82 - -3.89 1.14 1.09 -1.55 1.76
-3.17 - 0.59 1.07 0.42 0.35 -2.33 -1.27 -0.49 0.63 0.88 1.56 -1.27 -2.26 -0.19 -0.95
-1.53 -0.87 0.65 0.59 0.92 0.27 -0.9 -0.73 1.32 0.58 0.28 0.49 -2.01 -1.88 -2.52 -1.07
-7.04 -8.21 1.54 1.74 2.11 2.16 -2.89 -4.78 -5.17 -4.79 -1.82 -1.36 -8.32 -5.37 -5.76 -4.8
-3.66 -1.85 1.55 1.02 1.74 2.03 -2.56 -3.11 -2.46 -2.01 -0.74 -0.72 -2.78 -1.89 -1.06 -1.23
-2.2 -3.54 1.04 1.27 1.07 1.47 -2.0 -1.09 -1.44 -0.92 1.22 1.04 -4.79 -4.77 -2.57 -3.05
0.19 1.57 -1.57 -1.4 -0.25 1.47 -0.62 -1.52 -0.31 -0.22 -1.85 -1.92 -0.32 0.28 0.44 -0.02
- - - - - - - 4.0 - - - - - - - -
-1.77 -0.46 -1.14 -0.87 -1.32 0.75 0.02 0.84 0.93 1.97 -0.54 -0.52 -1.27 -2.97 -0.54 -0.61
-1.26 -2.23 0.76 0.65 1.72 2.35 -0.17 -2.64 -1.42 -1.8 -0.89 -0.96 -2.44 -2.18 -1.47 -2.57
-4.02 -4.92 1.06 1.16 2.11 2.43 -5.05 -4.49 -2.43 -1.65 -2.05 -1.95 -3.1 -2.95 -1.46 -2.2
-0.9 1.0 1.58 0.05 1.41 0.78 -8.03 -0.49 0.99 -0.35 -0.97 0.03 - -6.55 - -4.57
-2.85 -3.97 2.35 2.02 1.03 1.78 -3.1 -9.25 - -8.95 -2.57 -1.03 -3.59 -6.45 -2.45 -3.55
-4.07 -3.85 1.04 1.53 1.33 1.91 -2.12 -3.08 -2.08 -1.6 0.29 0.46 -2.22 -1.98 -1.53 -1.64
-0.21 -4.52 -0.92 -0.85 0.85 0.96 -0.68 1.23 -2.15 -2.09 1.45 1.23 -1.84 -1.64 -0.79 -0.81
-3.24 -6.39 -0.13 0.8 1.63 1.22 1.55 -1.14 -4.27 -5.42 -0.64 -0.73 -0.65 -0.09 -0.39 -0.41
-1.89 -1.56 -1.44 -1.64 -0.9 -0.87 -3.59 -2.85 -2.13 -2.82 -1.84 -1.77 1.05 1.39 2.3 1.5
-0.13 0.57 0.32 -0.38 -0.35 1.06 -0.16 0.1 -0.67 -1.2 -0.14 -0.65 -0.11 0.47 0.16 -0.48
-2.32 -2.89 1.23 1.31 -0.07 1.69 1.15 -2.48 -2.69 -1.42 1.23 0.47 - - -10.26 -
-2.75 -2.73 1.3 0.92 0.21 0.95 -1.26 -1.74 -2.76 -2.15 0.8 0.76 -0.49 -0.09 -0.02 0.14
-3.98 -1.87 0.99 1.37 1.27 0.73 1.32 0.11 -0.83 -0.99 -0.22 -0.46 -2.83 -2.91 -2.42 -1.63
-2.83 -2.41 1.2 1.11 1.0 1.01 0.17 -0.54 -1.92 -1.53 0.73 -0.22 -3.16 -2.02 -1.48 0.63
-0.79 -1.2 -0.49 -0.01 0.21 0.99 0.31 0.05 0.43 0.91 0.57 0.37 -1.7 -1.2 -0.82 -0.87
-2.37 -1.91 0.51 0.7 0.84 1.46 0.18 -0.46 -2.5 -1.82 1.19 1.11 -2.25 -1.6 -1.62 -1.53
-3.5 -0.82 1.49 1.71 0.76 1.4 -2.83 -3.34 -2.11 -1.17 -0.32 0.23 -2.61 -1.25 -0.42 -0.44
-2.62 -3.08 -0.71 -0.23 -0.68 0.83 -1.34 -2.04 -0.55 0.39 2.04 1.9 -1.67 -1.9 -1.71 -1.07
-3.2 -3.91 1.42 1.11 1.41 2.33 -1.08 -1.3 -5.31 -5.7 -2.17 -0.71 -2.22 -1.91 -0.68 -1.19
-0.41 -3.89 -2.64 -1.14 -0.01 0.22 -2.23 -0.79 - -5.14 -5.1 -1.63 -0.9 -1.68 3.1 0.88
-0.18 0.86 0.73 0.28 0.49 -0.59 0.38 0.53 -1.26 -0.86 -0.05 0.26 -1.27 -0.71 -0.89 -0.13
-1.64 -2.01 1.46 1.45 1.04 1.84 -1.66 -2.52 -1.73 -1.87 0.23 0.32 -2.59 -2.87 -2.67 -1.52
-2.26 -1.22 -0.23 0.27 0.03 0.37 -0.44 -1.4 -2.64 -1.6 -0.68 -0.6 0.84 1.04 0.87 1.27
-2.7 -1.21 -0.07 0.79 0.03 1.13 -0.65 -2.17 0.72 1.19 1.57 0.35 -3.07 -3.91 -5.3 -1.95
-1.97 -1.74 1.13 1.33 0.38 1.78 -0.1 -0.65 -0.47 -0.73 0.8 0.29 -4.93 -4.51 -4.44 -5.06
-3.71 -2.88 1.03 0.92 1.11 1.99 -3.21 -4.57 -5.48 -5.05 -2.52 -1.56 -0.7 0.5 0.4 0.73
-5.59 -6.2 1.19 0.62 1.2 2.57 -3.94 -1.97 -2.81 -1.82 0.72 0.55 - - -6.45 -6.04
3.45 0.57 -2.2 -1.83 -2.36 -4.46 -4.26 -2.49 -4.06 -0.74 0.19 -0.3 - - -7.24 -
-2.91 -2.17 0.83 1.14 0.64 1.72 -0.35 -3.12 -1.22 -0.57 1.35 1.06 -6.36 -5.37 -3.99 -4.2
-3.47 -2.67 1.27 1.2 1.25 1.38 -1.55 -2.87 -1.27 -0.81 -0.44 -0.3 -0.8 -0.58 -0.13 -0.17
-0.99 0.37 0.7 0.66 0.54 0.46 -0.16 -0.13 0.0 -0.09 0.75 0.8 -2.29 -2.64 -2.04 -1.39
-3.79 -2.58 1.19 0.64 0.88 1.63 -0.91 -1.71 -0.62 -0.65 0.43 0.12 -1.18 -0.89 -0.69 -0.26
-1.66 -1.06 0.72 0.24 1.7 -0.07 -1.97 -2.9 -0.47 -0.37 1.51 1.71 -6.08 -8.76 -3.37 -4.33
-3.65 -1.65 1.84 1.91 1.55 0.87 -5.39 -6.3 -2.55 -1.81 0.51 0.62 -9.27 -9.04 -4.54 -6.0
-3.5 -2.46 1.05 0.56 0.27 1.21 -4.13 -3.16 -0.19 0.32 0.94 1.04 -1.31 -1.27 -0.49 -0.21
0.26 -0.19 -0.57 -0.25 0.02 0.05 0.97 0.05 -1.81 -1.1 0.59 1.03 -0.86 -0.88 0.08 -0.11
-2.32 -2.08 1.64 1.33 1.94 1.43 -2.21 -2.47 -1.36 -1.3 -0.17 -0.01 -4.26 -4.96 -3.3 -2.98
-5.39 -1.25 1.5 1.16 0.62 2.73 -6.14 -3.94 -3.53 -3.68 -0.71 0.14 - - -1.72 -3.95
-2.38 0.6 0.96 1.32 0.76 1.69 0.64 -2.09 -3.25 -2.42 0.22 0.27 -4.61 -4.38 -1.93 -3.03
-0.99 -4.89 -0.47 -0.32 -1.39 0.78 -3.8 1.77 -6.59 -7.12 -2.47 -1.02 0.6 0.56 1.28 1.17
-4.57 -3.4 0.19 -0.3 0.08 0.85 - - - - -3.04 -3.17 - -0.44 2.96 1.21
-3.34 -3.61 1.73 1.37 1.83 2.1 -2.28 -2.82 -4.35 -2.12 -0.67 -0.95 -5.64 -5.15 -2.34 -4.17
-0.69 0.76 0.62 0.95 0.31 0.44 -0.38 -1.44 -0.67 0.14 0.43 0.64 -1.57 -1.3 -1.07 -0.68
-0.08 -6.7 -1.76 -2.49 -4.02 -4.6 -0.44 -0.05 -3.99 -4.51 - -3.26 1.26 2.23 0.83 1.89
-1.99 -2.13 1.54 1.33 0.94 1.66 -2.69 -3.93 -1.69 -0.92 0.06 -0.02 -1.92 -1.81 -0.4 -0.63

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.