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Heatmap: Cluster_80 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.12 -2.98 -0.89 -2.28 -1.18 -1.5 -1.34 -1.98 0.46 -0.54 -0.45 -1.37 1.62 0.78 0.76 1.64
-1.16 -5.17 1.7 1.48 0.06 1.16 -2.01 -1.76 - -8.17 -0.68 -0.65 0.51 0.36 -0.83 0.2
0.19 0.59 -1.21 -0.74 -0.4 -0.93 -0.18 -0.37 0.97 0.79 0.06 -0.09 0.15 0.17 -0.95 -0.07
1.6 -2.0 -0.9 -1.73 -0.64 -1.07 0.05 -1.53 -5.36 -4.13 -3.36 -2.84 1.54 1.19 0.46 1.32
1.23 -2.03 -1.07 -1.64 -0.35 -0.57 -0.53 -0.8 -4.35 -4.67 -1.64 -1.62 1.36 0.87 1.19 1.3
0.55 -0.84 -2.02 -2.52 -1.77 -1.39 -0.84 -1.27 -3.0 -2.51 -0.86 -1.78 1.69 1.34 1.04 1.55
-1.01 -1.22 -2.59 -1.85 -1.62 -0.8 0.28 0.04 -0.09 0.14 0.07 -0.25 1.34 0.92 0.07 1.05
0.44 -2.19 -1.98 -1.68 -1.4 -0.1 -0.09 -0.8 -0.93 -0.02 -0.32 -1.57 1.52 1.26 0.47 0.81
-0.46 -1.14 -0.56 -0.33 -0.11 -0.27 0.42 -0.19 0.38 0.29 0.58 -0.12 0.55 0.19 -0.42 0.13
-0.92 -1.1 0.9 0.87 -0.12 0.53 0.11 -1.65 0.7 0.21 0.14 -0.46 -0.19 -0.23 -1.18 -0.39
0.59 -1.64 -1.95 -2.47 -1.3 -1.22 -0.64 -0.04 -5.49 -6.43 -1.94 -2.53 1.95 1.53 0.58 1.36
-3.56 -5.75 1.82 1.71 2.12 1.1 0.81 -4.06 -7.72 -8.0 -1.85 -1.19 -5.11 -6.52 - -6.3
0.06 -0.38 -1.55 -1.27 -1.32 -1.11 1.7 0.22 0.19 0.17 0.48 -0.47 0.4 -0.26 -0.56 -0.08
-2.64 -4.23 -1.39 -2.32 -0.88 -0.59 -2.35 -1.71 -6.15 - - -3.58 2.2 1.91 1.22 1.44
-0.72 -0.43 -0.83 -0.44 -0.19 -0.4 1.6 -0.66 -0.86 0.19 0.14 -0.68 0.44 0.22 -0.29 0.39
-1.66 -1.79 -3.25 -1.43 -0.4 -0.22 -1.62 -1.7 -2.28 -2.65 -1.8 -2.06 1.83 2.05 0.72 1.29
0.72 -3.34 -1.9 -1.89 -1.21 -1.75 -1.47 -1.15 -5.23 - -2.26 -2.37 1.94 1.27 1.09 1.75
-3.92 -0.81 -1.04 0.66 -0.04 0.1 2.1 -0.93 -2.43 -2.12 1.52 0.62 -0.53 -1.23 -2.59 -1.52
0.01 -1.62 -1.63 -1.82 -1.35 -0.95 1.37 -0.55 -0.41 -0.5 0.71 0.02 1.06 0.06 -0.11 0.78
1.21 -0.27 -0.23 0.31 -0.97 -0.63 -0.86 -0.07 -3.13 -3.86 -1.41 -1.48 1.28 0.52 0.25 1.09
1.52 0.38 -8.35 - - - -8.02 1.09 -1.24 -1.87 -9.28 -7.06 1.58 1.62 -0.43 1.12
-0.33 -2.12 0.33 0.72 1.41 0.51 -0.31 -1.28 -2.11 -2.14 -0.89 -0.65 0.53 0.27 -0.09 0.63
0.41 -0.59 -3.09 -2.64 -2.47 -1.49 -0.37 -0.38 -0.21 -0.55 -1.61 -1.82 1.54 1.27 0.71 1.35
-1.38 -1.63 1.66 1.12 1.2 -0.12 1.3 -0.82 -1.27 -1.24 0.04 -0.21 -1.43 -1.92 -3.84 -1.86
0.54 -1.47 -1.21 -1.66 -1.0 -0.77 -0.27 -0.69 -1.63 -1.24 0.05 -0.86 1.37 1.01 0.7 1.23
-8.1 - -0.17 0.44 0.45 -0.07 1.37 0.4 -0.44 -1.61 0.12 -1.88 1.02 0.26 -1.28 0.57
-3.6 -2.24 - -3.02 - -4.38 -2.7 -2.16 - - - -4.78 2.39 2.13 0.53 2.02
-0.13 -2.56 -1.23 -1.0 -0.77 -0.47 -0.17 -0.11 -0.79 -0.77 -0.6 -0.84 1.61 1.16 0.22 1.03
-0.72 -2.26 -0.03 0.83 0.08 -0.1 2.04 -1.23 -0.26 0.25 0.53 -0.21 -0.71 -1.23 -2.3 -1.63
0.02 -0.69 0.23 -0.77 -1.22 -1.34 0.53 -0.97 -4.49 -3.43 -0.87 -1.5 1.77 1.26 0.45 0.7
-1.68 -1.11 -0.12 0.18 -0.38 -0.78 0.41 -0.75 0.43 0.8 1.04 0.59 -0.09 -0.52 -0.57 -0.09
0.39 -2.95 -0.93 -2.44 -1.49 -1.07 -0.44 -0.31 -2.89 -2.93 -1.53 -1.68 1.79 1.38 0.96 1.35
-0.66 -1.08 -2.63 -2.28 -1.2 -0.64 -0.07 0.51 2.15 1.85 0.2 -0.4 -1.7 -1.72 -2.58 -1.45
-3.27 -5.14 -5.72 -4.66 -4.2 -4.63 -4.74 0.93 3.08 2.26 -4.81 -5.86 -2.22 -3.37 -5.23 -2.74
-1.56 0.95 0.09 0.38 0.5 -0.08 0.86 -1.4 -0.38 0.36 0.72 0.88 -1.38 -1.84 -2.2 -1.36
0.63 -1.02 -1.44 -1.78 -1.12 -0.87 0.19 -0.41 0.09 0.54 0.56 -0.35 0.77 0.36 -0.2 0.82
0.67 -0.06 -0.61 -0.47 -0.85 -0.44 0.28 -0.22 0.99 0.46 0.43 -0.05 0.05 -0.25 -1.39 -0.35
0.15 -1.04 -0.35 0.12 -0.35 -0.67 0.34 -1.18 0.23 -0.19 0.59 0.69 0.51 -0.05 -0.82 0.37
- - - - - -4.05 -4.69 - - - - - 2.79 1.89 0.46 1.97
-0.06 -6.75 -1.1 -2.14 -0.62 -0.36 1.4 -0.16 -5.64 - -1.16 -0.68 1.54 1.08 0.79 0.61
-1.09 -0.79 -1.29 -0.79 -0.05 -0.9 0.62 -0.46 -0.11 0.07 -1.09 -1.03 1.28 0.89 0.24 0.84
1.65 -2.47 0.55 0.28 -0.4 -1.13 0.52 -0.1 1.03 0.76 -0.42 -0.67 -1.57 -1.77 -1.92 -1.25
0.51 0.09 -0.72 -0.28 -0.91 -0.62 0.57 -0.19 0.5 0.39 1.13 0.23 -0.54 -0.67 -1.44 -0.42
-0.99 -3.44 -1.28 -1.29 -0.67 -0.79 -0.38 -0.91 -5.48 -3.63 -2.34 -1.79 2.11 1.88 0.19 1.23
-0.7 -1.37 0.83 1.01 0.31 0.29 -0.15 -1.13 -0.4 -0.44 0.45 0.13 0.11 -0.54 -0.64 0.04
1.02 -0.7 -1.71 -1.73 -0.67 -0.47 0.32 0.42 0.04 0.2 0.44 -0.22 0.42 0.0 -0.63 0.52
-0.35 -0.75 -0.43 -0.07 0.18 -0.46 0.68 -0.62 0.09 -0.2 0.24 -0.34 0.74 0.23 -0.57 0.49
-0.08 -2.78 -2.81 -3.29 -2.07 -2.24 -0.88 1.86 1.36 2.09 -1.26 -2.07 -0.37 -0.61 -1.76 -0.23
-2.32 -1.11 -1.56 -1.58 -1.0 -1.14 0.1 -0.56 -4.61 - -0.18 -0.66 1.92 1.43 0.61 1.27
0.09 -2.17 -0.76 -1.63 -0.25 -0.47 -0.43 -0.76 -4.91 -4.46 0.03 0.19 1.27 1.11 1.17 0.89
-1.01 -1.82 0.04 0.32 0.21 -0.17 0.7 0.35 1.26 1.01 0.44 -0.46 -1.17 -1.4 -1.97 -1.27
0.32 -0.12 -1.21 -1.02 -0.21 -0.09 -0.01 0.19 0.04 0.03 0.77 -0.15 0.53 0.05 -0.67 0.26
-0.4 -2.56 -2.51 -2.35 -1.81 -2.09 -0.45 -0.23 -0.85 -0.14 0.78 -1.72 1.57 1.28 0.33 1.31
-0.67 -0.82 -1.57 -1.5 -1.27 -0.97 0.98 -0.21 -0.18 -0.06 1.08 0.55 0.55 0.43 0.16 0.01
-1.19 -1.55 0.1 0.71 0.54 -0.15 1.2 -0.89 -1.4 -1.57 0.72 -0.41 0.54 -0.12 -0.66 0.27
-1.51 -0.57 -0.95 -1.09 -0.05 -0.64 -1.37 -1.3 -1.04 -1.37 -0.69 -0.43 1.46 0.96 1.26 1.18
-0.22 -0.62 -1.84 -0.71 -0.75 -1.07 -0.04 -1.71 1.67 1.07 0.48 -1.33 0.54 -0.8 -0.98 0.73

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.