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Heatmap: Cluster_6 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.72 -1.27 1.2 0.94 2.51 -0.12 -3.53 - 0.84 0.88 - - -1.26 -
-1.72 0.31 -0.68 -1.48 -1.03 -0.38 -0.75 -1.07 0.73 0.99 1.07 0.41 -0.28 0.83 -0.6 -0.3
- - 1.58 0.64 2.44 2.08 -2.23 -0.45 - - - -1.63 - - -0.96 -
0.84 1.22 0.69 0.23 -0.35 -0.9 -1.12 -1.3 -0.93 -1.19 -2.2 -2.16 -0.06 0.05 1.27 0.14
-6.46 -6.26 -0.44 0.67 0.59 0.25 1.91 -0.08 -3.23 -3.18 2.07 0.6 - - -1.58 -
-6.01 - 0.79 1.15 0.67 3.35 - -4.82 - - - - - - -2.26 -
- - 0.58 2.14 - 2.42 - -1.68 -0.41 - - - - - 1.88 -
- - - - -0.51 - - -1.4 - - - - - - 3.9 -
- 2.13 - - - - - -0.71 - - - - - - 3.46 -
- - 1.47 0.84 2.51 0.76 0.85 -5.32 - - -2.86 1.04 - - -4.89 -
- 2.99 - - - - - - - - - - - - 3.01 -
- - - - - - - -0.85 2.79 2.85 - - - - 0.39 -
- - 0.22 2.77 1.28 2.14 -1.11 -4.72 - - -3.11 -4.22 - - -0.95 -
- - 1.4 - - - -0.28 - - - - - - - 3.65 -
-1.64 0.78 -0.25 - - - - -1.68 0.74 2.8 - - - - 2.05 -
- - - - - 4.0 - - - - - - - - - -
-0.13 1.08 - - - - - - - - - - - - 3.7 -
- - - - - - - - - - - - - - 4.0 -
-3.46 3.9 - - - - - - - - - - - -3.2 -0.13 -
-0.97 - 0.84 2.5 - - - - - - 0.51 - - - 2.73 -
- 3.38 - - - - - - - - - - - - 2.48 -
- - - - - - - - - - - - - - 4.0 -
- - 2.0 2.34 1.62 1.81 -6.11 -10.27 - - -2.87 -2.34 - - -6.73 -
- - - - - - - - - - - - - 1.62 3.69 -
-4.55 -5.36 2.61 1.45 2.0 1.19 -5.18 -8.14 -5.04 -2.57 -2.65 -1.7 - -8.83 -3.17 -
- - -0.32 -0.39 - -0.41 3.12 -4.44 - - -0.02 1.68 - - -0.45 -
-2.77 -1.53 1.94 1.83 1.07 0.0 - -3.3 - - -2.29 - - - 1.92 -0.17
- - -3.35 -3.76 -2.85 -1.95 -3.1 0.55 2.19 2.38 1.53 0.2 - - -3.79 -
-5.58 -4.11 3.07 2.76 -6.24 - -4.23 -3.56 - - - -5.8 - - -0.89 -
- - -0.18 0.45 -0.03 - - - - - - - - - 3.68 -
- - - - - - - - - - - - - - 4.0 -
- - - - - -0.54 - - - - - - - - 3.94 -
-7.33 -9.14 2.06 1.97 1.6 2.08 -4.28 -8.17 -9.66 -6.92 -1.82 -1.84 - - -9.6 -
- - - - - - - - - - - - - - 4.0 -
-0.16 - - - - - - - - - - - - 1.54 3.61 -
- - - - - - - - - - - - - - 4.0 -
-0.23 3.29 - - - -1.68 -1.33 1.79 - - - - - - 0.23 -
- - - - - - - - - - - - - - 4.0 -
- 2.01 - - - - - - - - - - - - 3.58 -
0.18 2.05 1.57 1.23 1.95 -2.46 - - - - - - - - 0.46 -
- -3.12 1.47 1.05 1.99 1.99 1.2 -3.69 - - - -3.87 - - -0.58 -
2.37 - - - - - - 1.93 - - 0.7 0.83 - - 1.85 -
- - -2.46 -2.12 -0.74 -0.49 - - -1.88 - 2.86 1.43 - - 2.02 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - 3.34 2.55 - - - -
- - - - - - - - - - - - - - 4.0 -
- 1.0 - - - - - - 2.03 1.48 - - - - 2.83 -
- -8.31 0.71 1.37 0.65 2.88 -3.37 -3.79 -4.87 -4.13 0.77 -0.17 - - -5.88 -
- - - - - - - - - - 2.27 - - - 3.48 -
- - 0.63 0.33 -2.71 0.32 -2.5 -3.52 0.96 1.55 0.89 0.78 - - 1.63 -
- - 2.25 1.81 -0.61 0.55 -2.73 -3.86 -0.33 0.27 0.06 1.04 - - -1.76 -
-0.26 -1.61 - - - - - - - - - - - - 3.89 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - 4.0 - - - - - - - -
- - - - - - -0.13 - - - 0.83 3.71 - - -2.25 -
- - -1.8 -1.29 1.91 2.33 2.6 -3.15 - - -5.05 -2.35 - - -2.82 -
- - - - - - - - - - - - - - 4.0 -
- - 0.68 2.02 2.14 - - - - - - - - - 2.57 -
- - - - - - - -0.04 0.77 - 0.88 1.77 - - 3.01 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - 2.64 - - - - 3.29 -
-4.54 - -1.62 -4.28 2.5 -0.55 3.04 -1.41 - - -2.91 -2.43 - - -1.74 -
- - 2.47 2.37 -0.36 0.84 - -1.38 - - - - - -2.0 1.07 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - 3.95 - - - - -0.78 -
- - - - - - - - - - - - - - 4.0 -
0.41 2.24 - - - 1.16 - 1.05 - - - - - - 2.5 -
- 2.91 - - - - - 3.09 - - - - - - - -
- - - - - - - - - - - - 1.63 - 3.69 -
- - - - - - - - - - - - - - 4.0 -
- - -0.56 -0.89 1.58 0.76 2.98 -5.97 - - 0.72 -1.57 - - -2.43 -
- - - - - - - - - - - - - - 4.0 -
-5.25 - 1.54 1.83 0.31 -0.33 -3.19 -0.96 0.69 0.19 0.86 1.18 - - -6.6 -
- - - - - - - - - - - - - - 4.0 -
3.18 2.65 - - - - - -5.28 - - - - - - -0.74 -
- - 2.1 -3.62 -0.16 -1.75 3.07 -5.23 - - -1.36 0.63 - - -3.91 -
- - - - - - - - - - - - - 0.48 3.87 -
- - - - - 2.32 0.68 - - - - - - - 3.23 -
- - - - - - - - - - - - - - 4.0 -
- - 0.57 0.66 2.24 2.26 0.9 - - - -0.88 -2.57 - - -0.25 -
-6.78 -7.35 0.62 1.04 2.14 1.85 1.24 -0.91 -6.59 -5.31 -2.1 0.24 - - -4.88 -6.97
- - - - - 0.7 - 0.83 1.34 - 0.43 0.32 - 0.52 2.59 -
-1.37 2.66 - - - - - - - - - - 0.43 - 2.99 -
- -0.57 -2.03 - - - - - 3.3 1.77 - - - - 0.86 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
- 0.86 1.02 1.85 1.29 2.33 - - - -3.11 -3.07 -1.59 - - -0.91 -
- - 1.88 1.91 0.66 - - -3.18 2.19 0.24 - 0.18 - - - -
- 1.93 - - - - - - - - - - - - 3.61 -
3.98 - - - - - - - - - - - - - -2.59 -
-10.74 -7.75 1.08 2.09 2.22 1.57 -1.03 -2.06 -3.82 -4.86 -1.4 -0.37 - - -6.75 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - -1.7 - - - - - - 3.97 -
- - - - 0.84 - 1.02 - - - - - - - 3.61 -
- - - - - - - - - - - - - - 4.0 -
- - - 1.18 - - - 0.03 - - - - - - 3.67 -
- 4.0 -9.1 - - - -8.77 -8.96 - -8.45 -7.42 - - - -6.21 -
- - - - - - - - - - - - - - 4.0 -
- - 0.29 -0.37 1.41 - 2.2 0.69 - - 0.99 - - 0.1 - 1.07
- - 0.36 0.12 -0.09 -2.25 - -2.89 0.54 2.23 0.63 1.94 - - -0.34 -
-0.3 3.5 -0.82 -0.49 -0.7 -1.59 -0.5 -5.08 - -4.08 -3.04 -2.56 - - -0.85 -
-0.74 0.98 - - - - -0.79 -1.88 - - -0.49 - - -0.99 3.26 0.85
- - - - - - - - - - - - - - 4.0 -
- - 0.05 - - - - - - - - - - - 3.9 -
- - - 1.52 - - - 0.48 2.79 2.26 - - - - - -
-5.84 - 2.84 1.03 2.03 0.54 -2.97 -7.0 - - -1.86 -0.36 - - -4.45 -
-4.12 - 2.11 1.89 0.7 1.99 -0.17 -1.34 -3.27 -4.21 -2.17 -1.28 - - -1.98 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.