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Heatmap: Cluster_125 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.33 1.37 1.06 1.5 - -1.01 - - 0.94 2.4 - - - -
-2.84 - 1.78 2.28 0.07 2.63 - -7.11 -2.26 -4.79 - -4.86 - -4.63 - -
-4.09 -5.7 1.6 2.14 0.08 1.69 -3.51 -1.98 -0.28 0.89 -0.83 -0.82 - -5.02 -4.54 -
- - 2.57 1.36 1.32 1.77 -4.54 -5.63 -4.44 -3.79 -0.46 -0.57 - - - -
- - 3.29 - 1.74 - 1.38 - - - - -1.88 - - - -
- - - - - - - - - - - - - - - -
-2.69 -0.34 -1.42 - 0.49 0.62 2.27 0.75 - - - - - - 2.38 -
- - - - - - - - - - - - - - - -
-5.31 -7.89 0.19 0.33 -0.24 1.54 -5.36 -7.62 -1.59 -1.3 2.26 2.08 - -6.46 - -4.49
- - 1.0 2.0 2.5 1.98 -2.43 -4.84 -3.95 -5.06 -4.02 -5.54 - - - -
- - 2.29 2.36 0.82 0.85 1.27 - - - - - - - - -
- - 1.11 -0.14 2.46 1.49 - -3.14 - - 1.79 0.1 - - - -
- - -0.17 2.33 - - - - 3.12 0.48 - - - - - -
- - 4.0 - - - - - - - - - - - - -
- - - - - - - - - 4.0 - - - - - -
0.8 3.36 - - 0.45 1.38 - - - - - - - - - -
- 3.61 -1.19 -1.84 - - - - 1.44 -1.51 - - - - - -
- - - - - - - - - - - - - - - -
- - 1.55 0.89 1.92 2.8 -2.95 - - - - -1.66 - - - -
- - - - - - - - - - - - - - - -
-3.05 0.05 2.37 2.3 0.38 0.26 -2.93 -2.75 -2.78 -2.36 -0.32 -0.28 - - - -
- 2.03 - - - - -2.54 -1.35 1.88 2.94 - - - - - -
- - -2.19 -0.56 1.96 2.66 1.74 -4.58 - - -1.25 0.12 - - - -
- - - - - - - - - - - - - - - -
- - -5.28 - -5.15 0.34 -2.14 -0.2 3.65 -0.93 -3.01 -3.11 -3.37 - - -2.49
- - - 0.6 - - - - - - - - 2.26 2.21 - 2.34
-2.23 -0.05 - -0.46 - -0.81 -1.68 - - - 2.38 - 1.04 0.94 2.01 -
- - - - - - - - - - - - - - - -
2.63 1.27 1.94 - - - - 1.84 - - - - - - - -
-8.0 -7.75 0.88 1.08 0.94 1.13 1.05 -1.97 1.18 0.99 0.07 -1.67 - - - -
- 2.14 2.68 - - - - 1.03 - - - 1.65 - - - -
-1.02 3.14 0.59 -1.0 -0.21 -0.52 - - -3.08 - -1.98 1.0 - -2.84 -0.77 -
0.24 3.62 - 0.55 - - - 0.08 - - - - - - - -
- 1.66 - 2.8 2.55 - - - - - - - - - - -
- -0.28 - - - - - - 0.25 0.3 1.35 1.24 - - - 2.97
-0.86 - 1.59 - 2.13 1.98 -0.66 - - - - - - - - 1.79
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -0.01 0.42 0.12 - 3.64 -4.58 - - -3.24 - - - - -
1.87 1.59 -2.06 - 1.84 1.84 -2.73 -2.71 - - - - -0.73 -2.83 -0.76 -1.86
-0.41 - 0.61 0.71 0.71 1.93 2.29 -2.7 -0.34 -1.29 - -1.35 - - - -
- 0.56 2.28 2.62 - - - 1.82 - - - - - - - -
- - 1.13 0.76 2.22 1.46 -0.78 -4.07 -1.71 -0.8 0.91 0.32 - - -4.11 -
- - 1.29 - 3.22 0.26 1.61 - - - - - - - - -
- - - - 3.34 - 2.55 - - - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- -2.19 0.43 -1.33 -0.53 0.21 1.02 -6.31 2.4 2.05 -1.41 -1.52 - - - -
- - - - - - - -0.88 1.95 3.54 - - - - - -
- - - - - - - 2.16 3.04 1.72 - - - - - -
- - - - - 2.44 - -0.21 - - - - - 3.28 - -
- - - - - - - - - - - - - - - -
-2.27 -1.06 -1.28 1.39 1.41 2.8 -1.96 -2.0 - - - -0.66 0.61 - - -
- - - - - - - -1.98 3.54 1.65 - - - - - -0.08
- 2.7 0.08 0.43 - 1.65 0.99 -1.61 0.7 - - - - - - -
0.17 -1.18 - -0.24 2.72 1.71 - -2.25 0.01 - - - 1.33 - - -
0.0 - - - - - 2.91 -0.71 - - 1.75 - - 1.81 - -
- - 0.42 0.77 1.53 0.41 2.83 -3.28 - - - 0.62 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- - 1.44 2.4 1.92 2.0 -4.05 - - - -2.58 - - - - -
- - 0.33 - 2.77 2.89 -0.93 - - - - - - - - -
-2.26 1.1 1.65 -0.79 0.93 0.43 -0.87 0.4 - - - - 1.72 - - 0.6
1.84 3.64 - - - - - - - - - - - - - -
-0.41 3.92 - - -2.66 - - - - - - - - - - -
1.67 1.84 - - 3.21 - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - 4.0
3.3 2.62 - - - - - - - - - - - - - -
- - 1.35 1.69 - - - - - - 3.05 0.95 - - - -
- - 1.36 -2.14 1.68 -0.03 - -4.2 0.6 1.8 1.58 -0.01 - - - -
-4.84 - - - -5.46 - - 1.14 2.88 2.59 - - -2.68 -3.77 -2.7 -
- - - - - - - - - 4.0 - - - - - -
- 2.21 - 0.07 - -0.3 - -1.91 0.3 - 0.4 - 0.65 1.88 - 0.53
- -4.23 -0.57 0.8 3.34 1.69 -5.89 - - - - - - - -2.33 -
- 0.98 - - - - - - - - 1.72 - 2.14 - 2.11 1.01
4.0 - - - - - - - - - - - - - - -
- -4.04 2.82 2.89 -1.76 -0.2 -3.19 -7.16 - - -3.53 -3.63 - - - -4.72
3.98 - - - - - - -1.89 - - - - - - - -
- -6.4 0.78 0.44 -0.96 2.84 0.64 1.85 - - - - - -4.03 - -
- - 3.27 1.6 1.38 -0.42 - -7.23 - - - - - - - -
- -2.32 1.62 0.8 -1.44 1.76 -2.23 0.19 0.66 - 0.76 1.39 - - - -
1.27 3.76 - - - - - - - - - - - - - -
-4.5 0.72 1.3 1.75 0.39 0.05 1.1 -0.6 0.03 -0.23 -0.77 -0.42 - - - -3.11
- - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.