Heatmap: Cluster_148 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - - - - - - - - - - - - -
- - -4.57 - -5.86 - 0.51 1.98 2.21 2.34 -0.7 -1.89 - - - -
- - - - - - - -0.83 1.07 2.64 1.43 2.13 - - - -
2.08 - - - -0.53 - 3.45 -2.51 - - - - - - - -
- - 2.35 2.43 1.48 0.74 0.1 - - - - - - - - -
0.85 - - - 2.95 2.1 - -0.96 - - - 0.72 - - - -
-4.26 1.21 -3.43 -3.15 -1.51 -1.99 -2.96 -3.64 2.8 2.4 -2.95 -2.11 - - - -
-7.94 - -6.0 - -7.5 -7.08 3.88 0.26 - - - - - - - -
- -6.35 2.18 1.59 1.44 2.07 -2.94 -3.84 -4.18 -3.21 -1.0 -0.61 - - - -
- - - - - - - 4.0 - - - - - - - -
- - 0.78 1.44 -0.36 -2.5 0.65 -2.37 -0.97 0.12 2.46 0.81 - - - -
- - - - - 1.74 - - - - - - - - 3.66 -
- - - - - - - - - - - - - - - -
3.16 - - - - - 2.74 -1.26 - - - - - - - -
- - - 1.88 - - - - - - 1.23 - - - - 3.32
- - 0.76 0.88 1.17 1.38 2.84 -4.96 - - -2.95 -1.74 - - - -
- - - - - - - 1.76 - - - - - 3.66 - -
- -1.92 - -0.26 -2.79 -0.14 -3.59 3.55 -2.34 - 0.08 -0.35 - - - -
- - - - - - - - - - - 4.0 - - - -
-7.87 - 2.41 2.52 1.21 1.05 -3.4 - -7.47 -7.42 -2.99 -1.57 - - -5.17 -
- 3.91 - - - - 0.0 - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -1.87 -0.95 2.92 0.8 1.06 0.77 -0.3 0.29 -4.2 - - - - -
-1.86 3.69 - - - -6.36 -6.42 1.47 - - - - - - - -
- - 1.02 1.2 2.35 1.15 1.1 0.19 -1.89 -0.92 -4.29 -2.29 - -5.77 - -
-0.72 - -1.54 -1.21 -0.35 -1.56 -2.2 0.25 0.61 1.09 1.98 1.9 - - - -0.38
3.06 - - - - - 0.99 -0.18 1.22 - 1.32 - - - - -
- 3.26 1.2 1.54 0.32 - - - - - - - - - - -
2.43 - - 0.63 - 2.26 - -2.38 - 0.95 - - - 1.1 - -
- -6.08 - -3.85 3.66 0.89 - -6.85 -0.47 -0.59 - - - - - -
- 1.08 - - - 1.77 - - - - - 3.39 - - - -
- - - - - - - - - - - - - - - -
3.08 2.74 - -1.71 - - -2.3 -2.46 - - -2.97 - - - - -
- - - - - - - - - - - - - - - -
-12.63 - -0.8 0.04 -1.35 -1.41 0.31 -6.29 - -13.51 2.8 2.43 - - - -
- - 1.65 3.08 1.57 0.01 -3.29 -9.27 - - -2.16 -4.49 - - -3.73 -
-0.81 - 0.52 1.6 1.87 1.11 2.16 -5.49 -4.6 - -1.69 -2.02 -4.84 - - -
- - -0.23 -0.3 -2.04 -0.69 -3.77 -3.98 -3.97 -2.91 2.69 2.74 - - - -
- 4.0 - - - - - - - - - - - - - -
-8.34 - -1.19 -0.33 -1.68 -1.9 1.65 -3.93 1.33 1.76 1.6 1.02 - - -6.26 -
- - 1.66 3.68 - - - - - - - - - - - -
- - -0.58 -1.47 2.4 2.51 1.48 -6.61 - - -2.16 -0.05 - - - -
- - - - 0.44 -0.84 3.78 -4.8 - - -2.83 -2.61 - - - -
- - - - - - - - - - 3.29 2.63 - - - -
- - - - - -3.2 - 0.21 1.02 3.67 - - - - - -
-4.53 -4.28 1.57 1.93 -0.25 2.45 1.21 -6.99 - - -2.68 -1.46 - - - -
- - - - - - - - - - - - - - - -
2.84 - - - - - 1.97 2.31 - - - - - - - -
-5.89 -3.35 -0.5 0.25 -0.04 3.15 -0.11 -1.26 -1.06 -2.98 -0.11 0.33 - - - -
- - 1.73 0.92 1.39 2.05 -0.71 -8.8 - - 0.28 1.13 - - -7.49 -
-0.0 -1.5 1.74 1.45 1.93 1.54 -3.2 -4.84 - - -0.23 -0.24 - - - -
-3.7 - -0.26 0.81 3.54 -0.29 -0.35 -3.52 - - - - - - - -
-2.26 3.85 - - - - - - -1.44 -1.38 -1.35 -2.04 - - - -
4.0 - - - - - - - - - - - - - - -
-5.93 - 1.83 2.2 2.07 1.34 -2.78 -6.5 -6.69 -7.22 -1.17 -1.03 - -8.03 - -7.06
- 3.18 - 1.0 - - - - - 2.31 - - - - - -
- 4.0 - - - - - - - - - - - - - -
- -0.54 2.1 0.09 1.73 1.61 1.55 -4.89 - - -2.57 -1.09 - - - -
- - 1.09 0.21 - 1.95 - - - - 1.41 0.44 - 2.27 - -
- 3.53 - - - 2.14 - - - - - - - - - -
- - 2.89 2.7 -0.14 -0.7 -1.47 -2.36 - - - - - - - -
- - - - - - - - - - - - - - - -
- - -2.38 0.34 -1.93 -0.72 -1.88 - 0.58 -3.75 2.67 2.44 - - - -
- - - - - - - - - - - - - - - -
- - - 4.0 - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
3.25 1.89 -3.89 - 0.37 0.51 - - - - - - - - - -
- - 4.0 - - - - - - - - - - - - -
2.31 1.62 - - - - - -3.82 0.4 - - - - - 2.72 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.