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Heatmap: Cluster_109 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.72 -0.22 1.51 -0.85 -0.48 0.1 2.49 -4.86 - - - -0.03 - - - -
3.69 - - - - - -5.27 -0.02 - - -0.13 -0.58 - -2.78 -1.71 -
- - 2.81 3.17 - - - - - - - - - - - -
- - 2.89 1.43 1.77 -0.69 0.67 -3.47 - - - - - - - -2.34
3.26 2.69 - - - - - - - - - - - - - -
2.1 3.49 - - - - - - -2.83 - -1.74 - - - - -
-1.11 - 1.23 0.95 1.75 2.53 - - - -2.99 -0.15 0.11 - - - -
- - - - 0.16 1.22 3.36 -3.22 - - 0.12 -0.98 - -0.74 - -
- - - - 0.9 2.32 0.1 -1.88 - - 1.44 2.34 - - - -
3.98 - - - - - - - - - -2.34 - - - - -
- - - - - - - 3.24 - - - - - 2.71 - -
-2.28 - - -2.19 -2.38 0.25 -3.19 2.31 0.63 2.19 0.95 -0.38 - -1.68 - -
2.5 3.13 -1.76 -4.01 -1.21 -3.38 -2.43 -3.19 - - - - - -3.53 - -1.65
- - 1.8 0.03 0.08 0.58 - - - - 0.5 2.91 - - - -
-1.15 3.95 - - - - -5.16 -3.45 - - - - - - - -
- 2.88 - 1.79 1.59 - 0.79 -1.2 - - - - - - - -
-0.0 - 2.96 2.44 - - - 0.84 - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-5.16 -4.72 1.12 0.94 1.37 1.01 -1.48 -1.42 1.83 0.04 -0.41 0.22 - - - -
- - - - - - - - - - - - - - - -
- - 0.03 0.85 -0.29 1.58 -0.15 -0.26 -1.3 -0.92 1.6 1.78 - - - -2.09
- - 0.3 - - - -0.37 0.44 - - 1.99 0.89 2.21 1.12 - -
- 3.97 - - -2.03 -4.51 - - -3.9 - - - - - - -
- - - - - - - - - - - - - - - -
2.97 - 1.28 - - - - - - - 2.53 - - - - -
- - - - - - - 1.71 - - - - - - 3.67 -
-1.87 -0.4 1.04 1.13 -0.21 2.93 - - -2.09 - -1.99 0.81 - - - -
- - - - - 3.79 - 1.14 - - - - - - - -
- - - - 1.47 -0.28 0.09 0.97 3.23 - - - - - - -
-3.14 0.04 -3.93 -1.6 0.78 1.32 -4.6 -2.62 2.0 -0.3 1.49 -0.2 -2.02 -3.12 -0.04 -2.14
- 0.19 -0.14 1.78 0.97 2.15 - - - - - 2.04 - - - -
- -6.91 0.0 0.5 -1.43 -1.26 -4.14 -3.96 1.04 1.08 2.36 1.76 - - - -
- - 1.2 2.16 2.19 -0.5 -3.2 -5.39 -4.64 -0.82 -1.08 1.47 - - - -
- - 1.39 - 1.03 - - 3.5 - - - - - - - -
- - -0.7 -3.69 1.88 0.7 3.27 -4.12 - - -3.33 -2.44 - - - -
- 2.73 - 1.07 - - 2.86 - - - - - - - - -
-9.79 -5.09 - -6.05 - -7.42 -2.32 3.65 -4.39 -4.16 0.1 0.98 - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - 4.0 - - - - - - - - -
-0.31 - 1.12 2.87 1.66 0.5 - - - - 0.21 - - - - -
- - 1.65 -0.33 1.04 1.89 1.46 1.83 - - - - - - - -
-2.0 3.95 - - -2.01 - - - - - -4.48 - - - - -
-1.54 - - - - 0.81 - 3.69 - - -0.07 - - - - -
- - 1.75 - - - - - - - - - 3.66 - - -
- - -0.98 0.37 -1.7 2.25 -0.05 -3.79 -1.85 -0.64 1.95 1.69 - - - -3.44
- - 4.0 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -0.28 2.26 1.85 0.83 0.63 -2.68 -1.02 -0.37 0.08 -0.03 - - - -
4.0 - - - - - - - - - - - - - - -
-5.15 - 2.11 1.64 2.05 1.27 -6.62 -1.33 -3.8 -0.15 -1.59 -2.81 - - -3.06 -
- - - - - - - - - - - - - - - -
- - - - - - - - 3.69 -0.57 - - - - 0.7 -0.4
- -4.18 - - - - -0.63 2.75 2.51 1.32 -2.3 -3.52 -3.79 - - -
- - - 2.03 - 2.66 - - - - - - - 2.48 - -
- - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.