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Heatmap: Cluster_185 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.03 -2.61 -1.94 -3.04 -1.31 -1.32 -0.71 -1.03 -5.8 -6.22 -1.53 -1.38 1.53 1.38 1.21 1.56
0.79 -0.82 -1.06 -2.58 -1.22 -2.18 -0.32 -0.3 - - -2.42 -1.44 1.37 1.66 1.33 0.97
0.33 0.69 -0.9 -1.14 -0.13 -0.3 0.47 0.09 -1.02 -2.01 -1.12 -0.65 0.62 0.78 0.81 0.16
-1.4 - - - - - -2.42 -3.49 - - - - 1.93 2.42 2.32 0.22
0.74 1.35 -1.24 -1.38 -0.9 -0.9 0.46 -0.13 0.27 0.02 -0.04 0.53 -0.6 -0.45 -0.27 -0.44
0.09 -1.65 -1.46 -1.91 -1.33 -1.02 0.34 -0.73 -0.06 0.43 0.92 -0.11 0.7 0.79 0.39 0.53
0.73 0.44 -1.08 -1.2 -0.92 -0.81 0.1 -0.49 -0.24 -0.54 -0.62 -0.59 0.71 0.78 0.56 0.61
0.97 0.71 -0.65 -1.17 -0.22 -0.31 -0.15 -0.68 -0.78 -0.81 -0.71 -0.12 0.32 0.52 0.54 0.39
-3.94 - -1.85 -2.05 - - -1.55 -1.79 -0.53 -0.86 -0.52 -0.18 1.35 1.61 1.87 1.43
0.82 0.42 -0.97 -1.28 -1.17 -0.69 0.17 -0.71 -0.27 -0.63 -0.31 -0.69 0.45 0.65 0.96 0.47
-0.56 -1.77 0.0 -0.26 -0.26 -0.45 1.32 0.02 -0.13 -0.34 0.32 0.54 -0.02 -0.03 -0.16 -0.27
-0.01 -1.67 -1.05 -1.08 -1.1 -1.22 0.31 -0.21 -0.33 -0.53 -0.69 -1.14 1.18 1.0 1.06 0.88
-0.7 2.3 - - - -5.08 - - - - - - 0.24 1.03 2.48 0.67
1.47 0.41 -0.67 -0.32 -0.51 -0.75 0.43 -0.41 -0.59 -0.52 -0.77 -0.9 0.26 0.11 0.1 0.3
0.82 0.5 -1.23 -0.63 -0.68 -1.05 0.68 -0.11 -0.74 -0.95 -0.35 0.12 0.5 0.33 0.26 0.34
0.72 0.19 -0.21 -0.95 -0.45 -0.39 0.16 -0.59 -2.37 -1.14 -1.76 -0.98 0.8 0.88 1.01 0.6
0.61 0.57 0.59 0.75 -0.33 -0.44 0.56 -0.9 -0.59 -0.81 -0.03 0.35 -0.84 -0.88 0.0 -0.59
-2.03 -2.01 -1.98 -1.02 -1.25 1.33 -1.14 -2.63 0.59 0.76 1.97 1.44 -2.19 -1.53 -0.94 -1.72
0.71 0.74 -1.62 -1.82 -1.3 -1.03 0.68 -0.05 1.06 0.92 -0.56 -0.41 -0.49 -0.17 -0.32 -0.3
0.46 -1.14 -1.87 -1.97 -1.51 -0.77 -0.79 -0.99 -0.7 0.23 -0.19 -0.77 0.81 1.04 1.01 1.35
1.29 0.81 -0.67 -0.71 -0.13 0.07 0.23 -0.66 0.2 -0.3 -0.35 -0.05 -0.3 -0.2 -0.37 -0.66
-0.08 -1.19 -0.69 -0.58 -0.12 -0.62 -0.43 0.71 -0.54 0.49 -0.15 -1.27 0.55 0.19 0.8 0.7
0.61 0.21 -1.21 -1.09 -1.14 -0.9 0.22 -0.89 -0.34 -0.28 0.28 0.09 0.54 0.65 0.53 0.44
1.39 -0.47 -1.14 -2.6 -1.39 -1.12 -1.16 -2.08 -2.98 -3.25 -1.98 -1.49 1.47 1.44 0.92 1.19
0.78 0.6 -0.71 -1.58 -0.68 -0.27 0.29 -0.99 -0.62 -0.42 0.2 0.42 0.16 0.42 0.34 0.03
1.49 0.04 -1.79 -1.97 -1.57 -0.95 0.53 -1.03 -0.2 0.26 0.24 -0.05 -0.14 0.08 0.34 0.47
-0.21 -0.98 -2.96 -2.85 -2.27 -2.13 -0.05 -1.11 -3.26 -2.03 -1.36 -1.19 1.54 1.6 1.71 1.08
0.76 0.32 -1.12 -1.04 -1.33 -1.14 -0.11 -0.53 0.24 -0.1 -0.41 -0.24 0.65 0.58 0.61 0.43
0.01 -2.3 -3.01 -3.49 -2.57 -2.18 0.96 -0.38 -1.54 -1.02 0.15 -1.52 0.83 1.37 1.59 0.85
0.97 -0.19 -1.09 -2.07 -1.11 -0.87 0.02 -1.65 -1.67 -1.54 -0.61 -0.56 0.83 1.01 1.08 1.15
-0.01 0.79 -0.68 -0.08 -0.45 -0.8 0.22 0.11 0.04 0.57 0.38 0.14 -0.31 -0.56 -0.13 -0.27
0.88 -3.61 -3.23 -3.63 -2.46 -2.7 -0.92 -0.71 -5.7 -4.91 -3.29 -2.98 1.58 1.93 1.62 1.17
0.36 -0.36 -0.86 -1.28 -0.73 -0.63 0.65 -0.28 -0.37 -0.6 0.2 0.4 0.11 0.5 0.51 0.58
0.24 -0.59 -1.8 -2.73 -1.45 -1.38 -0.02 -1.08 -3.83 -3.88 -1.66 -1.72 1.43 1.58 1.55 1.09
0.45 0.35 -1.34 -1.7 -0.61 -0.23 -0.09 0.29 1.25 0.64 0.08 0.09 -0.44 -0.5 -0.38 -0.46
1.0 0.48 -1.77 -1.94 -1.55 -1.35 0.52 -0.25 -0.8 -0.99 -0.49 -0.15 0.6 0.83 0.73 0.49
0.59 -0.44 -1.74 -2.41 -1.11 -1.04 0.31 -0.93 -0.33 -0.09 -0.14 -0.66 0.74 1.02 0.99 0.66
1.3 0.13 -1.46 -2.17 -1.03 -0.88 -0.0 -0.85 -1.99 -2.07 -1.02 -0.99 0.87 0.99 1.1 0.88
1.13 -0.57 -0.97 -1.67 -0.44 0.06 -0.11 -0.85 -0.83 -0.02 0.48 0.47 0.26 0.23 0.32 0.16
0.13 -1.33 -1.02 -1.44 -0.64 -0.38 0.75 -0.86 -0.28 0.31 1.17 0.11 0.08 0.28 0.26 0.18
1.04 -4.59 -3.19 -4.36 -2.94 -2.69 -1.07 -1.03 - -11.07 -4.66 -3.27 1.85 1.72 1.54 1.35
0.75 0.54 -0.91 -1.25 -0.59 -0.14 -0.04 -0.61 -1.2 -1.3 -0.95 -0.89 0.7 0.87 0.93 0.54
0.48 0.03 -0.92 -1.57 -0.85 -0.72 0.76 -0.37 -1.04 -1.04 -0.63 -0.23 0.69 0.81 0.69 0.72
0.17 1.23 -0.75 -1.7 -0.29 -0.17 -0.24 -1.44 -2.24 -2.8 -2.9 -1.84 0.92 1.35 1.34 -0.04
0.75 0.93 -1.47 -2.34 -1.51 -1.07 -0.36 -1.25 -0.93 -0.96 -0.77 -0.93 0.8 1.15 1.01 0.77
-0.13 -0.28 -2.8 -2.97 -2.88 -2.65 0.71 -0.1 0.75 0.56 0.57 0.76 0.1 0.37 0.34 0.22
-1.09 0.36 -0.24 0.01 -0.25 -0.01 -0.3 -0.73 -0.7 -0.78 -0.15 -0.31 0.24 0.68 1.19 0.24
- - -0.96 -1.17 -0.22 -0.35 0.38 0.67 - - - - 1.16 1.28 1.5 1.58
1.02 1.29 -0.92 -1.05 -0.78 -0.68 0.54 -0.52 -0.14 0.15 0.09 0.06 -0.66 -0.36 -0.1 -0.53

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.