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Heatmap: Cluster_142 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 0.18 -1.48 - - -1.49 -1.88 - - 0.85 2.07 0.1 -1.0 2.66 -
- - - - - - -3.77 3.37 -1.5 2.08 - -2.51 - - -0.22 -
-5.06 -3.83 1.67 1.6 2.1 1.91 -3.23 - - - - -3.54 - - 0.32 -2.36
- - - - - - - 1.37 - - - - - - 3.75 -
- 2.89 - - - - - -1.13 - 1.31 - - - - 2.5 -
- -8.56 -1.73 -1.32 -3.47 0.29 -6.0 -5.37 -2.06 -0.87 2.85 2.58 - - -7.09 -
1.53 3.2 - 0.35 - - - - -0.39 - - - - - 0.89 -
- - - - - 0.58 1.51 -1.08 - - - - - - 3.48 -
- 4.0 - - - - - - - - - - - - - -
- 1.58 0.79 0.71 - - - - - - - - - - 3.27 -
- - - - - - - -0.39 - - - - - - 3.93 -
-1.05 - - - - - - -0.81 - - - 0.49 - - 3.76 -
-5.73 -7.49 2.29 1.77 2.01 1.69 - -8.58 - - -3.09 -2.65 - - -3.04 -
- -0.67 - - - - - - - - - - - - 3.94 -
- - - - - - - - - - - - - - 4.0 -
- - - - -4.1 -1.66 - - - - 3.14 2.68 - - -1.34 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - 2.96 1.83 0.89 - - - - 1.5 -
0.98 - - 0.62 - 1.84 - - - - - - - - 3.16 -
3.07 2.76 - - - - - -4.38 - - - - - - -0.41 -
- - 1.94 - 1.47 - - - - - - - - - 3.23 -
-4.97 -4.76 1.98 2.33 1.58 1.09 -4.7 -2.64 -0.59 - - -3.41 - - -0.15 -
- - - - 1.04 - - - - - - - - - 3.8 -
3.46 -6.43 - - - - -8.16 1.84 -0.99 -0.43 -5.82 - - - -3.01 -
-5.48 - 0.62 0.46 1.18 2.84 -3.3 -4.27 -3.86 -2.59 0.74 0.65 - - - -
- - - - - - - - - - - - - - 4.0 -
- - - - - - -2.25 - 2.51 1.91 1.74 -0.96 - - 1.3 -
- 3.46 - - 0.62 0.15 - -1.91 - - - - - - 1.06 -
- - - - - 1.51 - - - - - - - - 3.72 -
-3.23 1.07 0.26 1.21 1.27 0.33 1.64 -0.57 - - -1.19 -0.88 - -2.62 0.45 -1.65
- -9.14 1.92 2.57 1.32 1.29 -2.9 -6.92 - -7.84 -0.9 -0.66 - - -5.61 -
4.0 - - - - - - - - - - - - - - -
- - 1.65 2.75 -0.55 0.3 - - - - -0.99 0.49 - - 1.21 -
- 3.9 - - - - - - - - - - - - 0.07 -
-8.45 -5.46 -2.25 -2.18 -2.53 -1.57 -2.71 2.99 0.82 2.04 -1.53 -0.5 - - -6.37 -
- - - - - - - - - - - - - - 4.0 -
-5.42 - -6.25 -5.72 2.39 2.92 -6.92 -3.43 0.1 0.88 -4.59 - - - -3.36 -
-4.1 -0.39 -0.3 1.2 1.53 2.56 -0.16 -3.95 - -2.67 -0.05 -1.15 - - -0.41 -
- - - - - - 1.22 - - - - - - - 3.77 -
- 3.54 - - - - - - - - - - - - 2.12 -
- - - - - - -1.33 - 2.54 1.6 1.05 - - - 2.22 -
- - - - - - - - - - - - - - 4.0 -
0.73 - - - - - - -0.39 - - 0.95 2.97 - - 1.93 -
- - 0.2 1.55 - - - - - - 2.33 2.03 - - 1.49 -
-6.81 2.16 -2.14 -1.42 -2.55 0.92 -0.19 1.16 0.92 0.09 0.35 0.53 - - -4.12 -
2.87 3.01 - - -0.66 - - - - - - - - - - -
0.14 - - 1.43 - - - 2.95 0.12 1.76 - - - - - -
- - - - - - -0.71 1.21 2.55 - - - - - 2.85 -
1.2 1.72 - - - - - - - - - - - - 3.38 -
- - -3.08 -0.65 0.03 -3.99 3.51 0.5 -1.0 -1.44 -2.69 -2.65 - - -2.66 -
- 1.46 - - - - - 1.38 2.59 1.58 - - - - 0.71 -
- - - - - - - - - - - - - - 4.0 -
- 3.11 0.47 -0.18 - - - - - - - - - - 2.35 -
- - - 1.28 -0.32 - - -1.6 2.38 0.84 - - - - 2.45 -
- - 1.36 1.6 0.23 0.81 -4.26 -1.8 -3.01 0.05 1.41 -0.21 - - 1.29 -
- - 0.62 0.77 -0.04 2.12 -0.26 -7.28 - - 1.9 1.52 - - - -
- - - - - - - - - - - - - - 4.0 -
- 3.99 - - - - - - - - - - - -5.01 -2.94 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.