Heatmap: Cluster_12 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 2.2 2.09 1.59 1.67 -4.39 -5.08 - - -1.38 -1.08 - - - -
- - - - - - - - - - - - - - - -
- - -0.0 1.32 2.8 1.74 -1.35 -9.66 -5.43 -5.37 -0.27 -0.09 - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - 4.0 - - - -
- - -2.02 -0.95 -1.89 -0.64 0.04 -6.26 2.53 2.03 0.97 0.55 - - - -
- - 0.23 -0.35 1.33 2.4 0.66 -1.26 -3.76 -0.8 1.24 0.23 - -3.51 - -
-6.39 - 1.29 2.05 2.58 1.35 -0.79 -6.58 -4.37 -3.67 -4.03 -3.63 - - -5.05 -
- - - - -0.3 - - -1.08 2.94 2.52 - - - 0.39 - -
- - 1.36 3.61 - 0.33 - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
1.9 - - - - - - 0.53 - 3.44 - - - - - -
- 4.0 - - - - - - - - - - - - - -
-10.63 -6.13 1.01 1.73 2.63 1.53 -0.31 -2.31 -3.3 -3.49 -2.07 -2.91 -7.93 -7.03 - -
- - 1.84 0.98 2.06 1.49 1.73 -7.37 - - -5.04 -3.14 - - - -
- - 2.47 1.81 2.6 - - -0.19 - - - - - - - -
- - 2.29 1.61 1.45 1.53 0.91 -7.2 - - -3.72 -1.2 - - - -
-2.53 -3.06 1.72 0.44 0.26 -0.62 -2.39 1.87 - -5.26 -1.47 2.31 - - - -
- - - - - - - - - - - - - - - -
- -4.24 2.8 2.44 0.41 -1.0 0.43 -5.02 - -2.98 -4.16 -3.27 - - -3.55 -
- 2.48 - 1.47 - - - - - - - - - 2.94 - -
- - 1.78 2.3 2.19 -0.07 -0.2 - -3.05 -1.99 -1.37 -1.47 - -2.8 - -
- 1.72 1.73 2.06 0.85 -1.3 - -0.48 - - - - 0.64 -0.46 - -
- - 0.21 1.13 -0.67 - 2.78 - - - - -0.21 - - 2.09 -
2.43 - - 2.6 - - - 2.18 - - - - - - - -
-11.17 -9.34 2.2 2.64 1.02 1.03 -1.72 -8.8 -4.79 -5.96 -1.3 -1.59 - -9.58 - -
- - - - - - - - - - 4.0 - - - - -
- - - - - -3.31 - 1.39 3.13 2.06 -2.6 -2.71 - - - -
- 3.39 - - - - - -4.63 0.39 1.97 - - - - -1.87 -
- - -1.29 - -0.08 -1.0 -2.16 - 1.57 -0.84 2.45 2.3 - - - -
-6.73 - 0.71 1.69 0.58 0.44 0.16 -2.7 -0.95 -1.02 1.65 1.51 - - - -
- - 1.48 0.61 1.65 2.04 1.94 -5.96 -5.73 -4.35 -2.18 -1.66 - - - -
-4.34 - -2.36 - 0.07 -2.37 -0.58 0.65 1.73 1.23 2.27 0.84 - - - -
3.4 2.18 -1.33 -0.99 - - - - - - - - - - - -
- - -1.22 - 2.77 - 3.01 - - - -1.14 -2.24 - - - -
- - - - - - - -0.67 - - - - - - 3.94 -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -2.06 -2.66 -1.62 0.05 1.85 0.24 - -2.5 2.01 2.39 - - - -
- -5.11 0.59 1.92 1.55 1.74 -1.52 -6.49 -1.66 -2.77 0.66 1.0 - - -5.33 -
- - 0.77 3.45 - 1.76 - - - - - - - - - -
- - 2.03 2.5 1.17 0.78 -1.31 0.21 - - -0.42 - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - -0.87 1.38 - - - - - 3.68 -
-3.28 1.18 - - -3.35 -1.19 - -2.67 2.88 2.48 - - - - - -
- - -0.94 -0.59 0.18 - - -3.63 3.77 - - - - - - -
- - 2.17 1.09 1.31 1.09 -1.92 -4.6 - - 1.27 1.03 - - - -
- - - - - - 4.0 - - - - - - - - -
- - -5.64 -4.73 0.29 -2.68 -0.1 -1.63 2.09 2.36 1.19 0.53 -4.73 -4.24 -3.76 -4.85
3.81 - -3.64 -4.77 -3.17 -1.97 0.4 -5.37 - - - -3.08 - - - -
- - -0.75 - 3.87 -1.79 - - - - -1.08 - - - - -
- - -0.94 1.72 - -0.97 0.39 1.64 - - 1.75 1.96 - - - -
-0.15 - - -0.02 -0.22 - 2.88 2.24 - - - 0.21 - - - -
- - - - - - - - - - - - - - - -
1.18 - - - - - - - - - - - - 3.78 - -
-11.49 - 2.36 1.82 0.59 1.9 -3.78 -10.51 -6.75 -5.15 0.31 -0.44 - -9.84 - -
-8.31 -6.44 1.23 2.79 0.96 2.15 -6.88 -5.32 -3.86 -3.75 -3.92 -3.6 - - - -
3.87 0.47 - - - - - -7.8 - - - - - -5.92 - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 1.84 1.82 1.95 1.43 1.05 -6.25 -4.03 - -2.94 -4.04 - - - -
- - 1.02 2.8 0.87 0.99 0.7 -1.76 - - - - - - - 0.35
- 0.94 0.69 -0.13 1.2 0.11 2.26 0.18 - - 0.0 0.33 - - - -
-7.9 - 1.35 2.69 0.61 2.13 -0.88 -6.94 - - -1.07 -3.72 - - - -
- 3.61 -4.18 -1.84 -1.04 1.07 -1.85 -2.24 - - -2.51 -2.03 - - - -
-2.57 -0.59 - - - -3.72 -4.37 -1.7 3.3 2.15 -2.42 -2.11 - - - -
- - -0.08 0.77 0.23 0.0 3.21 -2.1 -1.86 -0.47 -1.67 -1.5 - -8.64 - -
-8.42 - 1.11 1.22 2.74 2.15 -1.41 -6.59 - - -6.97 -6.08 - - - -
- 3.08 - - - - - - - 2.91 - - - - - -
- - 0.63 3.01 - -0.08 - - - - -0.7 1.78 - - 0.52 -
- - - - - - - - - - 2.99 3.01 - - - -
-8.0 - - -3.42 -3.76 - -1.91 -0.1 0.61 3.65 -0.99 -4.65 - - - -
- 1.91 0.9 - - - - -1.17 - - - 0.47 - 0.72 2.79 -
- - -0.21 0.18 1.3 2.98 -0.11 -2.16 -0.3 -1.01 -0.49 -1.08 - - - -
- - - - 4.0 - - - - - - - - - - -
- 3.91 - - - -2.71 -4.46 -1.69 -1.22 - - - - - - -
- - 1.82 1.94 0.24 0.94 2.21 -4.23 - - -1.2 -1.31 - - - -
-1.62 - 0.74 1.84 1.5 0.78 0.7 -6.25 - -2.94 1.1 0.99 - - - -
-1.68 - -0.44 - 3.07 2.58 - - - -2.79 - -3.86 - - -1.55 -
- - 0.46 -1.78 - 0.44 0.78 0.17 -1.5 - 2.5 1.29 - - 0.75 -
-0.09 - 0.14 1.48 -0.73 -0.89 - -2.52 -0.28 -0.22 - - - - 3.03 -
-4.16 -10.93 1.76 1.7 2.56 1.44 -3.04 -3.01 -4.78 -5.51 -2.28 -2.32 -9.42 -10.51 - -9.54
- - - - - - - - - - - - - - - -
- -9.43 0.51 -1.12 -0.76 -1.51 -2.49 0.08 -2.52 -1.78 2.34 2.68 - -7.06 - -
- - - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 1.46 1.26 0.88 2.02 0.96 0.11 -4.58 - - -0.65 -0.34 - -1.1 - -
- - 1.62 2.05 1.18 1.76 1.35 -3.62 -4.63 -6.89 -2.4 -2.06 - - - -
2.6 0.53 - - -0.38 - -1.19 0.0 - 0.12 - - - - 2.37 -
3.95 -0.98 - - - - - - - - - - - - - -
1.71 3.66 - - - - - -4.7 - - - - - -4.03 - -
-1.53 3.65 -1.26 -2.36 -2.26 -1.43 -3.8 -0.84 - -3.09 -3.06 -1.84 -2.84 -3.9 -0.83 -
- - - - - - - - - - - - - - - -
- - - - - - - 3.14 - 2.85 - - - - - -
- - - - - - - - 1.42 - - - - - 3.74 -
0.27 -0.31 2.25 2.14 -1.54 -1.68 -0.33 - -1.05 - - - - -0.85 1.22 -
- 0.19 2.32 0.9 2.21 1.12 -1.98 - - - -1.64 -0.69 - - - -
-4.0 -1.74 -1.23 -1.32 -1.51 -0.27 3.13 -0.23 -2.67 -1.61 -0.25 0.13 - - 0.66 -
- - - - - - - - - - - - - - - -
- - - - - 4.0 - - - - - - - - - -
- - 2.09 1.94 0.41 2.71 - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - 2.31 0.35 1.18 - - - - - - 2.91 -
- 3.12 - - - - - 1.2 - 2.32 - - - - - -
1.29 - 3.76 - - - - - - - - - - - - -
- - -2.3 - 1.47 -0.23 3.53 - - - -1.96 -3.38 - -4.13 -2.06 -
- -3.46 -0.66 1.19 0.17 -2.34 3.12 -1.4 - - 0.24 0.41 - - -3.94 -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 3.78 -0.98 0.16 -1.27 -2.02 - - - - - - - - - -
- - - -2.42 - -4.37 -5.0 3.78 -0.96 - -3.68 -2.78 - - 0.14 -2.54
- - - - - - - - - - - - - - - -
- - -0.01 0.0 2.11 3.1 0.16 - - - - - - - - -
-3.34 - 2.24 1.73 1.07 1.21 0.02 0.01 -1.75 -2.91 -1.21 -0.81 - - - -
- - 1.38 - - - -1.29 1.2 - - 0.04 - - - 3.27 -
0.92 -0.15 0.72 1.54 -0.47 - - -3.26 - - -0.94 - - - 2.87 -
- - 1.15 - - - 1.96 - - - 3.1 0.41 - - - -
0.44 1.5 2.2 1.66 -0.07 -1.33 - -1.09 -0.72 0.12 -1.43 -2.54 - - - -
-7.96 0.38 -8.65 -7.73 -4.63 -9.1 -5.82 3.23 1.46 1.25 -3.82 -4.63 - -9.83 -6.76 -8.86
- - - - - - - 4.0 - - - - - - - -
3.47 - - - - - - - - -0.22 - - - - 2.03 -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-1.3 0.8 -1.51 0.41 -0.57 -0.08 3.23 -4.16 - - -0.52 -1.95 - -2.69 - -
0.37 0.65 -0.67 -1.21 -2.0 -1.84 0.59 -3.09 - -3.49 2.33 2.27 - - - -
-11.44 - 2.05 2.38 1.12 2.09 -6.39 -13.28 -10.04 - -2.89 -3.68 - -9.81 -7.74 -
- - -2.87 -3.73 1.09 0.34 2.9 0.73 - - -0.47 1.36 - - - -
- - 0.87 1.79 1.99 2.42 -0.8 -4.25 - - -1.33 -1.43 - - - -
- - 3.62 - - - - 1.9 - - - - - - - -
-1.16 - 0.62 - - - - - - - - - - - 3.51 1.41
3.77 1.26 - - - - - - - - - - - - - -
- - 1.41 -0.68 0.07 1.93 -5.62 -2.4 2.73 -1.72 -2.45 -1.29 - -3.13 - -
- - -3.78 -4.67 -1.76 -0.74 -0.78 1.42 - - 2.51 2.58 -4.68 - - -
- - - - 3.49 - - 2.26 - - - - - - - -
1.98 0.08 1.2 1.55 - - -1.48 0.83 -0.18 - 0.91 -0.19 - - - -
-7.03 -5.2 -1.66 -2.26 -0.42 1.56 2.8 -0.33 -3.21 -5.61 1.21 0.62 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-6.69 - 0.93 -0.81 2.1 1.82 -3.4 2.38 -2.15 - - - -3.98 - -3.01 -
-0.92 -2.37 -2.25 - -2.7 -1.55 -4.51 2.31 2.59 1.55 - -3.28 - - -0.95 -
- - - - - - - - - - - - - - - -
-9.33 3.97 - - -8.42 - - -4.99 -2.82 -2.84 - - - - - -
-2.38 -0.02 0.26 0.92 0.94 -1.74 0.29 -0.28 0.77 0.83 0.96 0.95 - -3.35 - -
- - -0.43 0.47 1.91 1.84 1.09 1.64 - - -2.4 0.14 - - - -
- - 2.05 1.64 1.37 2.08 -2.84 -3.79 -6.17 -3.87 -0.23 -0.39 - - -6.65 -
-1.0 -5.66 0.31 0.96 -0.55 1.93 -5.19 -5.3 -1.72 1.07 1.93 0.61 - - - -
- - - - - - - - - - - - - - - -
-3.65 - 2.8 1.83 1.53 0.05 -1.76 -4.29 - - -1.31 -0.39 - - - -
4.0 - - - - - - - - - - - - - - -
-6.31 0.09 -0.53 -0.31 0.76 0.44 0.27 -0.01 0.25 0.66 1.45 1.42 - - - -
- -0.83 0.3 1.46 - 1.21 -3.25 - 1.99 2.35 - - - - - -
- - - - 2.8 2.64 -0.32 1.01 - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - 4.0 - - - - - - -
-2.39 2.99 -0.73 -0.06 0.92 -2.36 1.8 -3.03 -2.08 - -3.99 - - - -1.75 -
- 4.0 - - - - - - - - - - - - - -
- -7.36 -4.7 -4.04 - -5.14 -7.37 1.67 -2.09 -4.04 1.59 3.23 - - - -
- -10.22 -1.33 -1.15 -1.93 -2.87 -5.45 -1.45 0.12 2.91 0.46 2.14 - - - -
-8.75 - 1.56 2.1 -0.68 -3.92 -8.07 -4.77 1.04 -2.08 -1.73 2.45 - -9.75 - -
- - - - - - - - - - - - - - - -
- - - - - - - - 3.57 2.05 - - - - - -
-1.14 0.94 1.85 1.85 1.13 1.08 -1.76 -0.72 -5.34 -4.99 -0.75 -0.77 - - - -
-11.89 - -0.88 -0.8 -2.83 -1.44 -1.09 -0.62 -2.3 2.25 1.92 2.17 - - -8.2 -
- -0.1 - -2.99 -0.62 2.79 -3.0 -3.4 - - 2.35 1.05 - - - -
0.78 3.64 -0.79 -2.26 - -0.16 - - - - -2.9 - - - - -
-1.03 - 1.44 2.31 2.48 0.83 - - - - - -1.14 - - - -
- - - - - - - - - - - - - - - -
-10.33 - -5.38 -6.05 -9.42 -7.0 -2.94 0.61 3.21 2.25 -2.76 -2.8 - - - -
- 3.89 - - - - - - - - - -0.92 - -0.69 - -
- - - - - - - - - - - - - 4.0 - -
- - - - - - - - - - - - - - - -
-9.64 -8.27 -1.62 -1.25 -3.33 -1.37 2.14 1.54 0.6 1.88 -0.92 0.78 - - -7.54 -
-4.83 - - -1.98 - - -2.3 3.94 - -5.38 - -3.87 - -5.2 - -
-2.0 - - -4.42 - - -0.18 2.37 1.98 2.43 -4.08 - - - -1.87 -
-4.68 - 2.26 1.11 0.81 -0.22 -0.6 -5.35 - -6.71 0.39 2.13 - - -5.46 -
-7.57 - 0.73 1.96 0.55 2.19 2.11 -3.47 - - - - - - - -
- -0.94 -1.63 0.12 - - - 3.78 - -2.58 - - - -2.39 - -
-1.29 - 3.03 0.91 - - -0.1 - 1.17 - 0.27 0.16 - - - -
- - 0.96 2.63 - -0.05 - - - - 1.27 2.16 - - - -
- - - -0.58 0.2 2.76 - -2.61 2.5 - - 0.68 - - - -
- - -1.13 -2.38 3.46 -0.17 1.67 -6.38 - - -3.04 -3.15 - - - -
- - - - - - - - - - - - - - - -
3.74 -0.84 - - - - - - -0.09 - - - - 0.21 - -
- - - - - - - - - - - - - - - -
- - -1.19 -0.45 0.82 0.99 1.2 2.82 - - - -0.64 - - 0.11 -
- - -0.37 0.55 - - - 3.72 - - - -0.81 - - - -
- - -0.23 -0.14 1.88 -0.01 3.17 -4.61 - - -2.31 -4.0 - -3.73 - -2.76
1.69 3.67 - - - - - - - - - - - - - -
- 1.95 - 2.22 1.95 1.86 - - - - - - - - - -
-9.03 - 2.24 1.44 2.58 0.41 -0.28 -3.13 -7.65 - -4.09 -2.01 - - - -
- - 0.95 -0.02 -0.27 0.62 1.74 0.54 -0.74 0.31 0.35 - - - 1.49 -
- - -0.23 0.37 -0.82 1.21 - - 0.61 1.05 1.64 2.09 - - - -
2.04 - - - - - - - 3.57 - - - - - - -
- - - - - - - - - - - - - - - -
0.29 1.85 0.55 1.21 2.48 0.84 - - - - - - - - - -
- - 1.88 2.35 2.3 0.24 -0.54 -5.09 -8.91 -6.04 -1.9 -3.19 - - - -
- - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.