Heatmap: Cluster_101 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.86 -7.62 1.19 0.65 0.91 -0.31 1.26 1.26 -2.64 -2.01 0.73 0.09 -2.24 -1.46 -2.33 -0.66
0.13 0.81 0.28 -0.01 0.51 -0.36 1.02 1.29 -3.8 -2.78 0.43 1.39 -5.76 -6.12 -6.05 -4.61
-0.96 -3.82 - - - - - 2.78 -1.93 -3.47 -1.1 -1.95 -1.23 0.76 -0.26 2.17
-0.64 -0.88 - - - -2.66 -0.71 1.72 - - -1.95 -2.05 -0.71 1.19 0.26 2.62
-2.15 - -2.21 -2.86 - -2.64 - 2.24 2.17 2.02 - -3.6 - -1.41 -0.34 -0.43
0.35 -2.25 -0.35 0.29 1.16 1.12 -0.16 1.5 - -6.12 -3.18 -1.04 -0.69 -0.94 0.06 0.66
-4.32 -6.07 0.5 -0.49 1.07 0.69 2.26 1.04 - - - -1.53 -0.31 -1.14 -2.65 0.57
-4.07 - 1.73 0.63 -1.47 1.97 -1.85 -2.16 - - - - 1.05 -0.37 - 1.78
-1.24 -1.54 2.34 1.6 1.97 0.77 -4.09 0.26 -7.01 - -4.91 -2.85 -5.68 -4.45 - -
-1.53 -2.26 1.66 1.56 0.91 -0.11 -1.3 -1.05 -6.28 -8.99 1.61 1.35 -8.83 -8.63 -8.99 -8.16
-1.86 -0.85 1.81 1.3 2.32 1.56 -0.59 -3.55 -3.21 -3.78 -2.78 -2.53 - -10.13 -11.38 -12.48
-3.53 0.31 0.91 1.25 0.49 0.86 -1.73 -0.23 0.49 -0.83 1.19 0.72 -4.57 -5.93 - -3.48
-3.86 -0.06 -1.84 -1.64 -2.54 -1.73 -5.92 -3.65 - - -5.52 -4.04 0.83 2.02 1.34 2.42
1.09 -1.83 -3.18 -5.83 -4.61 -2.92 -2.75 3.18 1.05 -0.58 -1.58 -0.42 -4.42 -3.99 -3.64 -4.09
-1.43 2.65 0.53 -0.66 0.61 -0.04 0.0 0.53 -1.45 -2.38 -1.67 -0.43 -2.74 -5.48 -2.44 -1.54
1.43 -0.05 - - - - -4.08 3.5 -2.82 -5.09 - - - -3.92 - -0.49
-0.02 -0.22 -0.96 -3.7 -1.03 -0.89 0.47 3.0 - -4.37 -2.0 1.06 -2.15 -2.24 - -1.69
-0.2 1.38 0.85 0.84 1.28 0.09 0.06 0.92 -1.62 -2.34 -0.59 -0.5 -3.18 -2.98 -3.35 -1.88
-1.58 -1.92 -2.37 -1.96 -1.99 -1.03 -3.81 2.87 0.77 0.86 1.3 -2.13 -2.1 -3.47 -5.1 -2.0
-1.53 -0.65 -0.14 -0.82 0.83 0.01 -1.37 0.51 - - - -3.83 0.37 -0.03 2.13 1.17
1.23 3.75 - - -7.44 - -7.24 -4.05 - - - - - -8.34 -6.27 -3.28
-0.13 -9.4 1.98 1.45 1.22 1.65 -3.05 -1.62 -9.19 -6.82 -0.08 0.52 -7.45 -9.35 -4.82 -4.06
0.45 1.68 1.63 0.58 1.28 -0.38 -0.86 0.29 -2.22 -1.79 -0.9 -1.18 -3.04 -3.87 -5.97 -2.42
-2.5 -4.66 1.13 1.09 1.67 0.6 1.96 0.7 - -6.8 -2.44 0.07 - - - -
-5.19 -5.56 0.6 0.65 1.34 2.58 0.3 -2.75 - - -2.52 -2.41 0.16 -2.7 -1.37 -0.05
-9.48 -13.4 2.38 2.07 1.87 1.52 -4.82 -9.09 -12.3 - -7.45 -6.99 - - -8.39 -8.49
-7.26 - -7.49 - - - -8.16 2.56 2.32 2.3 - - - - - -2.69
1.14 - 1.12 -0.1 1.04 0.44 2.01 0.3 - - -1.58 0.11 -4.26 -3.48 -3.29 -1.51
-2.26 2.44 0.49 0.47 0.92 1.36 -1.56 0.92 -3.09 -4.61 -2.47 -1.83 -4.64 -4.74 -3.67 -3.44
- -2.77 -2.22 - - - - - - - - - -0.31 - - 3.89
2.08 - -5.37 -3.46 - -4.41 -6.04 3.41 -4.8 -2.74 - -4.81 -3.46 -2.23 -2.48 -2.0
-0.57 - - - - - -0.42 -0.41 - 2.48 - - - - - 3.04
-1.12 3.06 -0.99 -1.02 0.82 -0.49 0.21 0.99 -3.37 -5.56 -4.12 -2.08 -4.63 -6.95 -5.46 -3.56
- 2.31 -2.76 -1.1 -2.63 -1.79 - -2.83 - -3.11 1.31 0.28 0.96 -0.13 0.71 0.62
1.08 - -2.48 - -1.76 -1.52 -4.15 2.98 - - -1.81 -1.33 -1.57 0.66 -0.59 0.89
-0.91 -4.41 0.88 0.53 2.5 1.38 -2.1 1.52 -6.14 - -5.46 -6.15 -5.78 -2.18 -1.35 -3.59
2.24 0.41 -0.38 -0.17 0.85 0.15 0.42 -1.81 -4.64 -4.24 0.44 0.93 -3.4 -3.43 -5.11 -2.46
-1.03 -1.87 -3.48 -3.89 -1.86 -3.03 -4.15 3.2 0.49 0.53 -5.14 -5.25 -2.89 -0.18 -1.91 0.31
2.49 3.35 -8.94 -9.19 - - -8.87 -4.6 -6.14 -7.3 -7.85 -8.37 - - -7.64 -3.41
0.97 - - - - - - -0.74 - - - - 1.37 0.27 1.34 2.83
-0.34 3.68 - - - -5.24 - -0.08 - - - - -1.73 -2.83 - 0.02
2.6 2.9 -1.24 -0.59 -2.82 -1.65 -1.95 -2.84 -3.42 -3.25 -4.24 -3.55 -3.87 -4.8 -7.13 -3.68
-3.66 - -0.17 -0.64 0.88 0.21 2.67 1.36 - - -4.3 -0.67 -1.84 -1.74 -1.35 -0.31
- -3.58 1.05 0.8 0.76 0.8 0.32 0.74 - - -0.96 -1.26 -0.39 -0.22 0.85 0.49
-3.04 -2.64 -3.29 -5.28 -2.67 -2.65 -4.7 1.7 0.88 0.59 -0.57 -1.89 0.63 0.94 -0.4 1.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.