Heatmap: Cluster_1 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 0.99 1.52 1.26 1.09 -1.69 - - - - - -0.42 0.94 1.87 -
-0.89 2.01 -1.72 -1.24 1.59 -0.17 0.16 0.11 -2.01 -3.43 0.57 1.13 -3.92 -2.76 -1.64 -3.95
-1.55 - -5.09 - - -3.62 - -6.36 - - - -6.85 1.06 1.95 3.2 -1.45
-2.83 -6.82 -5.73 -5.98 -5.18 -6.35 -6.98 -0.85 -1.14 -1.65 -1.37 -2.96 -0.75 0.06 3.55 -0.77
-0.61 3.24 -2.75 -2.15 -2.95 -1.41 -0.22 -2.15 - - -2.81 -0.7 -3.16 0.13 0.62 -1.29
1.02 -7.55 -2.63 -2.79 -3.46 -2.02 -0.8 -1.09 - - -4.04 -2.08 -2.11 0.75 3.27 -1.33
- -1.97 2.45 2.01 - -0.44 0.09 -2.26 -0.25 0.55 -0.74 - 0.39 - - -
-5.92 -5.93 1.82 2.09 1.84 0.55 -3.76 -1.38 -1.24 -1.53 -1.22 -0.88 -2.5 -2.39 -0.84 -
-5.22 -7.58 1.78 2.0 1.31 -1.16 -1.75 -1.55 -2.24 -1.78 -1.45 -0.95 -1.03 -1.25 1.25 -1.79
-7.24 -1.21 1.34 2.12 2.37 1.02 -4.34 -3.23 -3.2 -1.06 -1.29 -1.73 - -6.86 -5.37 -
-2.45 -1.63 -1.8 -0.95 -0.97 -0.86 1.0 -0.67 -0.36 0.74 1.41 0.86 -2.55 -1.15 1.74 -3.26
-5.89 -0.74 0.4 1.03 0.14 1.61 -0.39 -0.71 0.08 -1.36 1.85 -0.26 -3.06 -4.03 -1.46 -4.32
-7.62 -6.95 1.48 1.66 1.29 1.81 -2.23 -2.46 -2.92 -2.13 -0.2 -0.24 -2.41 -1.2 -0.32 -2.44
-5.89 - 1.37 -0.02 2.55 0.72 1.06 - - - -1.63 -0.84 -3.19 -1.7 0.59 -
-3.43 -2.6 -2.29 -1.19 -0.57 -0.1 2.46 -0.63 -0.21 0.42 1.4 0.44 -1.95 -2.07 -1.12 -2.6
1.85 2.46 -0.82 -0.45 -1.44 0.21 -5.39 -4.83 -0.97 -2.36 -0.45 -1.6 -2.48 -1.21 0.45 -1.92
-3.11 - - -2.97 - - - 1.24 - - -1.63 -3.74 0.61 0.83 2.67 1.73
-6.32 - -0.08 -1.16 1.48 1.42 -0.71 -4.54 -4.37 -3.57 1.27 2.57 - - - -
-6.7 -1.84 1.15 0.74 1.91 0.66 2.1 -2.72 - -7.88 -0.06 -0.37 -6.59 -3.23 -2.45 -
- - 0.07 0.86 0.88 1.49 2.67 -2.52 - - -1.59 -1.41 - -1.8 -0.22 -3.64
-1.97 3.0 -2.28 -2.4 -1.15 -2.07 -0.98 - 0.85 1.63 -2.25 -2.17 -2.83 -3.92 -0.85 -3.95
-3.6 -3.08 - -4.81 -3.62 -3.65 -4.51 3.76 -2.59 -3.36 -3.91 -4.01 -2.08 -2.18 0.15 -3.79
-3.13 -2.93 0.0 0.48 2.11 0.19 0.85 0.25 -0.11 -0.64 -0.05 0.09 -4.19 -3.2 0.03 -3.07
- - 2.77 2.18 -1.03 0.49 - -2.44 -2.89 - -1.8 - - -2.67 0.99 -
-6.41 -7.16 2.17 1.72 -1.01 0.76 -4.16 -1.87 -0.31 -0.56 0.5 1.4 - - -2.73 -
-1.31 -6.87 0.09 0.31 0.19 -0.35 0.92 -0.07 2.38 0.84 -2.3 -2.38 -2.68 -2.06 -0.86 -2.61
-8.13 - 1.78 1.81 1.7 2.3 -3.55 -6.39 -11.66 -8.79 -1.6 -1.24 - -8.59 -4.68 -8.1
- -6.4 1.68 1.71 1.7 2.48 -5.83 -4.28 -3.82 -3.91 -2.8 -2.4 - - -3.28 -
-0.29 -3.29 1.74 1.66 0.63 0.81 -0.1 0.11 - - -2.04 -0.25 -2.02 -0.62 0.37 -
2.37 -1.44 -1.63 -1.44 -1.11 0.47 -0.03 -1.56 -0.84 -1.93 0.67 0.1 -0.93 -0.34 0.31 -0.79
-3.7 -4.3 1.49 2.44 0.79 0.18 0.52 -1.0 -6.34 -4.69 -1.44 0.5 -4.24 -2.74 -0.51 -3.33
- - -1.47 0.24 1.39 2.41 1.63 1.31 - -5.66 -1.53 -1.4 - - -2.39 -
- -0.66 2.03 1.06 0.3 0.7 -0.42 -2.87 -2.35 - 0.84 0.81 -2.01 - 0.55 -
- - 2.59 - - 1.98 - - 2.6 - - - - - - -
-4.13 -1.19 1.64 1.24 2.13 1.86 -1.36 -4.9 -7.91 -5.39 -1.59 -1.17 -5.02 -4.24 -0.74 -3.4
-1.08 -0.25 - - - 0.99 -0.38 -2.36 - - - - 1.62 0.52 1.59 2.08
-9.07 -8.34 1.19 1.8 1.64 1.84 0.05 -4.99 - -8.0 0.49 -0.03 - -5.08 -5.07 -4.64
-3.73 -5.17 1.77 1.99 1.68 2.02 -3.39 -5.45 -5.13 -4.81 -0.75 -1.24 -7.57 -6.89 -4.46 -8.22
- 2.5 - - - - -5.23 -4.04 - - -1.59 -3.01 0.35 1.87 2.23 -2.77
- - - - - - - 1.9 0.79 - - - - 1.02 3.09 -
-4.79 - -0.31 0.57 0.08 2.4 -1.98 -1.87 0.15 -3.38 0.36 0.91 -1.51 -0.49 0.47 -
-5.24 - -3.12 -3.53 -1.23 -1.39 -2.66 -3.88 - - -2.78 -4.88 -1.69 1.48 3.51 -3.5
3.93 -3.54 -7.5 -7.16 -5.06 -4.0 -5.37 -5.13 -7.9 - -6.22 -4.75 -5.59 -3.99 -1.3 -6.72
-3.54 -4.31 0.92 1.07 2.48 1.9 -1.07 -2.82 -3.86 -4.37 -0.19 -0.16 -8.18 -6.47 -4.62 -7.72
-3.87 1.2 -2.17 -0.94 -3.97 -1.63 -0.7 -1.61 1.27 2.81 0.58 -1.28 - -4.02 -3.53 -3.63
- -6.1 0.17 1.16 2.19 1.59 -2.28 -1.3 0.73 0.57 -0.51 -0.79 - -8.9 -5.25 -
- - - - - -0.95 - -0.82 2.07 - 1.62 0.87 - 0.91 1.98 -
-0.08 1.47 -2.89 -1.83 -1.78 -3.46 -5.45 1.01 1.81 -0.91 1.14 -0.71 -1.77 -0.73 0.69 -3.48
-2.88 -2.0 0.7 1.42 0.49 1.38 -0.14 -0.52 -0.62 -1.8 0.68 0.08 -1.66 -1.66 0.34 -2.37
-6.4 -6.73 1.35 1.03 2.21 1.82 -0.39 -1.62 - - -6.55 -2.01 -4.29 -1.22 0.0 -1.33
0.83 -4.58 0.33 0.16 2.13 1.96 -2.65 -0.15 -5.54 -5.48 -0.24 -1.23 - -3.4 -0.21 -2.2
2.34 0.96 -3.77 -2.77 -1.44 -1.39 -2.05 -2.33 0.06 0.6 -0.67 -1.75 -0.63 -0.32 0.86 -0.28
-1.16 3.25 - - - - -2.42 -4.64 1.01 0.83 -3.78 - -1.21 -1.82 -0.24 -1.34
-2.0 1.27 1.77 1.92 -0.26 0.52 -4.26 -0.97 -2.02 -2.23 -0.12 0.31 -3.26 -3.36 -0.97 -
-0.69 -5.25 1.42 2.43 0.76 1.2 -4.38 -3.07 -1.44 -2.08 -1.87 -3.56 -2.21 -2.31 0.35 -1.11
-5.54 -6.66 -7.52 -7.83 -10.64 -10.21 -6.72 2.22 2.35 2.6 -3.92 -4.55 -12.88 -12.59 -10.64 -13.32
-1.46 1.88 -0.36 -1.61 -1.16 0.21 - -0.24 -0.86 -2.53 0.91 1.33 - -0.35 1.31 -
-3.62 - 1.05 1.04 1.43 1.45 0.03 -3.85 -3.75 - -3.66 -1.76 -1.44 0.47 1.54 -2.56
-2.39 3.93 - -5.65 - - -5.66 - -4.41 - - - - -4.17 -1.51 -4.2
-4.35 - -4.57 - -1.63 -3.02 -1.65 0.76 -4.0 -1.94 2.98 1.99 - -0.94 -0.68 -2.78
- 1.89 1.7 1.13 1.15 1.74 - - -4.67 -4.61 -2.57 -2.36 - -3.47 -0.4 -
-7.15 -6.2 1.48 1.64 2.07 2.29 -2.94 -4.73 -3.61 -3.11 -1.98 -1.64 -8.18 -6.95 -5.62 -6.25
-2.18 -1.54 1.73 2.24 0.1 1.55 -1.81 -3.47 -4.17 - -1.75 -1.37 - -1.59 0.48 -0.94
-2.08 - 0.91 1.47 1.37 1.72 0.3 -2.3 - - - - -1.05 -0.66 1.09 -0.91
-4.25 -4.18 -1.76 -2.87 0.31 -0.9 0.86 0.18 -2.36 -2.37 -0.58 -0.15 -0.0 1.04 1.89 1.02
- - -1.6 - -0.48 0.95 - -0.81 -1.0 - 1.67 0.56 - - 2.87 -
-0.64 - -0.29 -0.3 1.39 1.47 1.66 -1.84 -3.29 - -3.19 -0.79 -1.52 0.11 1.21 -1.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.