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Heatmap: Cluster_241 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-3.31 - -1.53 - -1.4 - - 1.89 -1.97 -0.32 1.93 2.02 - - 1.36 -
- 3.56 -0.76 -1.43 - -0.79 - - - - - - - -0.94 1.13 -
-1.17 1.76 1.25 1.81 1.96 0.22 - - - - - 0.25 - - - -
- - - - - - - - - - - - - - - -
-4.87 1.24 1.92 1.68 1.09 0.82 -0.97 -1.99 -1.2 -2.32 -0.77 -0.42 - -6.8 - -
- -4.9 2.29 1.63 1.61 0.95 -1.46 -2.36 - - 0.02 0.49 - - -5.22 -
-7.99 -2.0 -6.52 -6.01 -5.58 -4.55 -3.98 2.12 2.59 2.33 -3.18 -3.63 - - - -
- - - - 1.03 -0.7 2.87 - - - 0.44 1.65 - - 0.62 -
- -1.8 -3.83 -0.49 - 3.79 - -2.68 - -3.19 - -3.26 - - -0.94 -2.04
- 3.33 -0.52 -0.55 -0.62 0.01 0.76 -0.76 - -4.64 -3.61 -1.39 -3.36 -4.46 - -
- - -3.4 - - - - - 2.35 3.37 - -3.85 - - -1.52 -
- - - - - - - - - - - - - - 4.0 -
-6.31 - 0.39 -1.15 1.6 0.72 1.0 -4.31 - -7.48 1.88 1.93 - - - -
-6.83 -3.84 1.54 1.04 1.25 -0.04 -1.8 -0.76 0.6 1.29 0.41 0.52 - - -7.55 -
-4.04 -0.33 -4.26 -3.19 3.51 1.53 -2.93 -3.21 - - -2.86 -4.29 - -5.03 -1.96 -
- - - - - - - - - - - - - - 4.0 -
-6.98 - - -5.84 - -2.74 - 3.01 1.48 2.32 - -5.61 - - - -
- - - - - - - 4.0 - - - - - - - -
- - - -0.51 -0.77 -0.88 - -1.27 3.22 1.81 -0.14 - - - - -
3.81 - -0.33 -0.99 - -1.36 -2.0 - - - - - - - - -
2.67 3.26 - - - -4.09 - - - - - - - - - -
-3.56 -5.98 0.98 1.39 2.1 0.95 -1.09 -3.62 -3.11 -1.85 0.75 1.24 - - -3.12 -
- - 0.53 -0.45 0.32 0.99 2.66 -4.48 - - - - - - 2.08 -
- - - - - - - - - 1.46 - - - - 3.73 -
- - - - - - - - - - - - - - - -
0.05 - - - - - - - - - - - - - 3.9 -
-2.2 - 0.18 -0.08 3.04 0.88 -2.08 - - - -0.74 - - - 1.48 -
- - - - - - - - - - - - - - 4.0 -
- - -0.1 0.12 1.71 0.54 2.89 -4.79 - -5.69 -0.3 -0.24 - - -3.42 -
3.54 - - - - - - - - -0.4 - - - - 1.85 -
-0.99 3.76 -3.02 -1.68 -0.88 -3.05 -3.69 -2.14 - - -3.35 - - - -1.13 -
- - - - - 2.82 - - - - - - - - 3.16 -
- - - - - - - - - - - - - - 4.0 -
- - -1.27 -0.93 - - - -0.76 1.32 0.38 - - - 0.55 3.2 -
- - - - - - - - - - - - - - - -
- 0.33 - -1.31 - - - 3.38 1.26 0.58 - - - - - -
0.74 - - -0.17 - 0.05 - -0.09 2.52 2.52 - - - - - -
- -2.85 - -1.86 - - - 1.78 3.1 1.85 - - - - - -
-0.7 3.94 - - - - - - - - - - - -7.54 -4.47 -
- - - 1.18 2.09 - - - - - - - - - 3.24 -
2.99 0.0 - - - - - -0.26 - - - -0.81 - - 2.49 -
-1.38 0.52 - - - - - 3.11 - - - - - -0.97 2.32 -
- 0.24 - -0.84 0.54 -0.21 0.15 0.41 0.41 -0.53 1.82 -0.6 - - 1.71 -
-6.38 - -3.99 - - - - 3.4 1.45 1.31 - - - - -2.68 -
- - 4.0 - - - - - - - - - - - - -
- - - 2.87 - - - - - - - 3.12 - - - -
- 3.69 -1.46 -1.54 -2.52 0.74 -6.13 -5.11 - -3.24 - -4.9 - - -1.57 -
- - - - - - -4.76 4.0 -6.47 - - - - -7.24 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.