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Heatmap: Cluster_107 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.99 -0.16 -2.47 -2.38 -1.46 -0.45 1.11 -6.51 - - 2.9 1.99 - - - -
-6.71 - - - - - -4.28 3.99 - - - - - - - -
-2.91 -3.8 -1.79 -1.68 0.9 -0.27 -6.26 2.17 0.3 2.56 -1.02 -1.58 - -4.77 - -
- -6.49 -0.79 0.72 0.63 0.23 1.9 0.79 0.3 0.81 0.59 -0.04 - - -3.1 -
2.04 -0.79 -0.76 0.8 0.35 -0.38 -0.73 -3.49 -1.8 - - - 1.61 0.56 0.52 -
0.27 -2.18 1.48 1.64 0.08 0.97 -4.77 -4.94 -2.52 -5.46 1.0 1.76 - - - -
-4.89 - 1.08 0.77 1.56 2.05 2.14 -7.76 - - -1.64 -2.56 - -4.29 - -3.32
-3.62 - - - 0.12 -1.27 -3.49 3.48 - - - - - - 1.66 -
- -4.75 -0.92 - 2.75 1.67 1.79 -5.3 - -3.62 -0.78 0.48 - - - -
-5.3 1.34 2.51 2.13 0.49 -0.62 -0.8 -2.95 -2.7 -2.73 -2.56 -2.65 - -10.12 - -
- - - - - - - - - - - - - - 4.0 -
2.52 2.64 - - - - -2.34 -1.1 1.11 -0.37 - -1.25 - - - -
- - -1.7 0.05 0.66 0.59 3.37 -3.93 -3.13 - -0.62 -1.27 - - - -
-3.05 2.03 2.23 -0.36 1.4 0.3 -2.94 -1.17 -1.25 -3.06 -1.81 0.09 - - - -
- - -1.4 -1.56 2.82 2.73 -5.47 -8.44 -5.23 - 0.22 -1.54 - - - -
-6.23 -7.96 1.54 1.38 2.52 1.37 -0.6 -4.71 -9.14 -7.91 -1.27 0.02 - -10.88 - -
-1.54 -4.18 2.58 0.98 1.44 -0.61 0.73 -6.9 - - -2.6 1.24 -4.92 -6.02 - -5.05
1.17 1.3 -7.22 - - - -4.72 3.49 - - -6.55 -6.66 - - - -
- -0.75 - - - - - -2.87 - - - - - 1.59 2.66 2.56
-2.23 -0.49 0.83 1.02 2.13 2.04 -0.25 -4.83 -4.33 - -0.15 -0.61 -4.97 -5.07 -2.41 -5.1
- 3.86 - - - - - - - - - - - - 0.53 -
- - 1.01 0.85 - -2.57 1.62 -0.14 0.53 1.41 0.35 1.4 - - - -
-2.1 - 0.55 0.88 0.03 2.26 -0.41 -5.56 - -2.28 -0.25 - - 0.49 1.57 -1.12
-7.6 0.4 -4.05 -2.84 -1.47 -1.81 -4.76 3.62 -0.88 -0.15 -5.94 -4.85 - -6.26 -6.51 -
-2.99 2.66 0.58 -0.9 -0.51 0.64 0.01 -3.87 -2.66 - -1.57 -2.67 -0.31 - 1.25 -1.43
- 1.43 -0.53 0.59 -1.95 -0.89 -4.34 2.81 0.96 0.06 -2.76 -3.42 - - - -
- - -0.01 0.43 -2.09 0.45 -4.55 -1.38 2.22 2.53 -0.91 -0.55 - - - -
-2.65 0.35 1.17 0.83 1.52 0.98 1.25 -0.72 -5.87 - -0.42 0.87 -5.1 -7.19 -5.12 -3.9
-8.91 3.98 -6.14 -4.22 - -7.18 -5.49 -8.79 - - -7.48 -6.58 - -7.32 -4.25 -
- - - - - - - - - - - - - - 4.0 -
- - -3.83 -4.49 -4.28 -4.12 1.23 1.82 2.73 1.67 -3.74 -4.85 - - - -
- 2.99 2.22 - - 0.37 - - - - 1.07 - - - - -
- - - - - - - - 1.14 2.2 2.82 1.13 - - - -
-2.57 - - - - - -2.13 -3.19 0.22 -0.74 - - 1.5 - 3.06 1.37
2.36 - - - - - - 3.16 - - - - - 0.95 - -
- - - - - - - - - - - - - - - -
-6.01 2.8 -0.94 -0.34 -1.19 -1.14 1.28 0.58 0.21 -2.95 -0.58 -0.31 - -7.75 -3.31 -5.19
-3.28 -2.36 0.02 1.32 0.4 1.17 0.44 -3.03 -0.09 -0.1 1.52 0.77 -2.27 -4.95 -2.88 -1.65
- - 3.49 2.26 - - - - - - - - - - - -
- - -0.2 1.08 0.85 0.72 -3.37 -0.82 1.28 1.44 1.13 0.61 - -4.69 - -
- - 0.38 0.99 0.61 1.96 -0.51 0.13 - - 0.82 1.89 - - - -
-6.4 -7.74 0.74 -0.72 0.37 -1.33 -4.02 -5.86 -1.67 -3.39 1.85 2.98 - - -5.35 -
1.61 - -0.07 -0.74 - - - 0.28 1.5 1.15 -0.4 - - -0.25 1.82 -
- - - - - - - -2.32 2.46 3.37 - - - - - -
-3.22 - -1.56 -1.88 -2.57 - 0.14 -4.08 0.45 0.07 2.54 2.52 - - - -
-1.48 - - -2.83 1.7 1.45 2.75 -2.05 -1.01 -2.53 -0.5 -0.43 - - -1.27 -
-9.77 -1.86 -0.15 -0.36 1.74 0.4 2.09 -1.73 0.2 -1.8 0.66 0.86 - - - -
-6.15 -5.9 0.19 1.53 0.68 1.86 2.48 -3.84 -4.79 -3.15 -1.89 -0.63 - - - -
- - -4.9 -4.57 -2.98 -3.64 -1.11 2.28 1.88 2.08 0.77 -0.49 - - -3.88 -
- 0.98 -0.44 0.37 -1.63 0.78 - 0.39 0.97 1.56 -1.1 - - - 1.71 -
-1.65 -2.21 1.93 1.36 0.88 1.86 -0.69 -4.06 -5.63 -5.3 0.52 0.55 - -10.47 - -
1.86 - 1.41 0.4 2.04 0.54 1.13 -4.18 - - -1.94 -2.86 -3.51 - - -3.64
- 1.53 0.49 2.56 0.04 1.19 - - - - - - - 1.31 - -
- 3.75 - -2.49 -3.69 -0.86 - -6.48 -0.66 - - - - - 0.07 -
- 4.0 - - - - - - - - - - - - - -
1.37 -0.19 -0.06 -0.32 -1.52 - - -0.6 -1.08 - 1.6 -1.09 0.27 0.17 1.24 0.14
-6.01 -4.76 0.98 1.44 2.19 0.5 0.82 -1.56 -1.53 -0.82 0.57 -0.44 - -8.0 -4.93 -7.03
-2.48 0.02 2.65 2.77 -1.26 -1.68 -1.19 -4.32 -2.39 -3.33 - - - -2.43 - -
- - - 1.19 - 2.24 - - - - - - - - 3.17 -
- 3.69 -0.96 - -2.42 -1.58 - - - -1.91 -0.88 - - - 0.34 -
- -1.04 1.31 1.5 1.75 0.79 - - 0.08 -0.13 -0.41 - - -0.68 0.81 -
- - -1.55 -1.22 - - - - 1.03 - -0.87 - 1.36 - 3.33 -
- - - - - - - 4.0 - - - - - - - -
- - 1.06 1.21 -0.89 1.26 -2.67 -2.21 -3.76 -4.11 1.72 2.22 - -5.5 -2.43 -
- - 0.42 2.42 2.47 1.11 -2.45 -5.76 - -3.48 - -2.55 -2.19 -3.29 -0.22 -
- 1.02 -1.43 -2.33 0.89 0.42 1.52 -5.89 - - 2.4 0.4 - -1.42 - -1.45
1.07 3.59 0.52 - -1.09 - - - - - - - - - - -
3.92 - - - - - - - - - - - - - -0.27 -
0.53 -2.55 -0.22 0.17 1.29 1.21 0.39 0.38 -1.31 -0.9 1.12 0.35 -2.44 -2.42 -2.73 -2.9
- - 1.43 1.44 0.83 -0.93 1.25 - - - - - - 0.93 2.0 -
- 0.82 -0.04 0.3 - -2.52 1.08 -0.68 0.27 -0.84 1.9 1.79 - -2.69 - -
- - - - - - - - - - - - - - - -
- - - - - - - -1.01 2.05 3.5 -3.78 -6.2 - - - -
-4.76 -3.46 1.72 1.71 1.49 1.22 0.84 -1.65 -2.79 -2.73 -0.48 0.03 -6.73 -7.15 -6.49 -9.17
- - - - - - - - - - - - - - 4.0 -
- 3.99 - -7.08 -6.27 -5.13 - - - - - - - -6.59 -4.52 -
-4.64 -8.69 2.06 1.52 2.07 1.16 -2.64 -5.68 -3.93 -3.08 -3.35 -4.24 -4.89 -4.86 0.91 -4.99

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.