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Heatmap: Cluster_19 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.1 1.91 -0.05 -1.3 -1.5 1.14 - -0.96 - - - - - 0.18 1.25 -
2.58 - 1.11 2.66 -0.51 -0.58 - -4.07 - - -5.56 - -4.35 -4.44 - -
- - 2.46 - 1.94 0.91 - 1.78 0.4 - - - - - - -
-1.71 3.61 0.26 0.18 -1.93 -3.1 -2.41 -4.14 -3.48 - -1.39 -3.5 - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - 2.32 -0.66 0.71 -1.69 - - - - 1.29 0.2 2.27 -
-0.2 -0.47 -0.61 - - 0.1 - -1.86 -0.61 0.03 -1.51 1.38 - 1.29 2.42 -
-7.07 - -4.43 -7.56 -6.76 -5.93 -4.75 3.15 1.43 2.07 -7.24 - -5.97 - -4.0 -6.1
- - - 1.55 1.34 3.18 0.54 - - - - - - - - -
- - 2.37 2.56 1.04 0.87 0.05 - - - - - - - - -
- - - - - 4.0 - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- 1.77 - - - - - 1.83 3.18 - - - - - - -
- - 2.54 - - 3.02 - -0.35 - 0.37 - - - - - -
- 1.88 - - - - -0.58 - - - - - - 1.91 2.98 -
- - - - - -0.86 - 0.18 - - - - - - 3.63 0.95
- 4.0 - - - - - - - - - - - - - -
- - - - - 0.64 - - - - 2.34 3.23 - - - -
- - 2.29 2.03 0.69 -2.12 1.87 -0.24 - - -3.82 -0.7 - - - -
- - -0.83 - 2.58 0.6 2.79 -5.13 - - -0.93 -1.04 - - - -
- -0.26 -1.31 - - -2.34 -1.98 -0.26 -0.74 1.97 - -0.16 0.61 1.51 1.58 -0.52
- - - - - - - - - - - - - - - -
- -1.19 -1.82 -0.49 - - -4.08 3.71 - - - - - - 0.48 -
-8.21 - -0.16 2.16 0.66 -0.27 2.08 -6.25 - - -0.12 1.6 - -4.58 - -
-3.34 -2.0 -1.13 0.43 -0.26 -0.85 - -10.81 -1.95 -3.36 2.51 2.68 - - - -
- - 0.21 1.26 2.48 2.14 1.08 -6.91 - - -2.57 -2.67 - - - -
- - - - - - - - - 2.25 - - - - 3.49 -
-6.26 -6.59 0.89 0.73 2.61 1.93 0.07 -5.94 -3.23 -0.53 -1.76 -1.4 - - - -
-6.79 3.95 -3.97 - - - -6.64 -2.42 - - - - - -5.15 -2.08 -
- - 1.93 2.74 1.42 0.67 - - - 0.08 -2.21 - - - - -
-0.03 - -1.19 -0.6 -0.71 -3.55 -1.52 3.45 - -2.89 -1.12 0.41 - - - -
- 3.56 - - -3.01 - -2.8 -1.5 - - -1.41 -2.52 - -0.74 1.29 -
- -3.73 -0.16 -0.24 2.05 1.5 1.12 0.67 - - 0.83 0.73 - - - -
- - - - - - - 2.84 - 2.05 - - - 2.23 - -
2.33 3.11 0.67 - -1.78 - - - - - -2.25 - - -2.09 - -
- - - - - - 2.25 - - - 3.49 - - - - -
- 1.82 - - - - 2.08 - - - 2.4 - - 1.57 - -
0.75 -0.04 - - - - - 0.33 - - - - - - 3.6 -
- - - - - - 4.0 - - - - - - - - -
- -5.31 3.33 0.33 0.54 -0.98 -2.11 -5.09 - - -0.76 0.39 - - -0.87 -
- - 1.28 0.69 3.28 -1.24 0.72 -7.67 -6.03 - -5.93 -4.45 -4.69 - -3.71 -
-1.01 1.3 0.1 0.31 1.27 0.18 -2.5 -0.41 0.74 0.36 -0.07 1.23 - - - -
- -3.75 - - - - - 3.19 2.11 1.29 - - - - - -
-6.61 -3.55 2.09 2.64 -4.08 -1.09 - -3.55 1.65 -0.7 -2.12 -0.64 - - -2.91 -
- - - - - - - - 4.0 - - - - - - -
- - -0.12 2.8 - 3.02 - - - - - - - - - -
-0.79 3.78 -0.51 -0.94 -4.34 -1.47 -7.46 - - - - - - - - -
- - -1.18 1.62 0.28 2.79 - - - - 0.81 -0.03 - - 0.71 -
- 3.99 - - - - - - - - - - - -3.95 - -
- -1.48 2.5 1.32 1.74 1.83 -2.8 - - - - -1.14 - - - -
- - - - - - -6.52 3.97 -2.69 -4.2 - - - - -2.96 -
- - - - - - - - - - - - - - - -
- - 0.6 0.56 -1.57 1.5 1.51 -5.65 -4.57 - 2.1 1.4 - - - -
2.09 2.5 - - - - - - 1.76 1.44 - - - - - -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - 2.08 3.56 - - - -
- - - - - - - - - - - - - - - -
-3.91 - -0.55 -0.14 2.52 2.33 0.22 -0.23 - - -0.36 -1.0 - - -1.83 -
- - 2.59 1.2 - - - 0.62 1.59 1.64 - - - - - -
- - 1.25 0.14 -0.83 -3.93 -2.98 0.59 3.15 0.29 - - - - -2.59 -
4.0 - - - - - - - - - - - - - - -
- 1.69 - - - - - 3.67 - - - - - - - -
- - - - 2.8 2.33 - - - 2.01 - - - - - -
- - -1.76 -1.42 2.54 2.21 1.82 - - - -1.09 -0.19 - - - -
- -2.15 0.4 0.5 2.07 2.67 0.14 -2.99 -2.76 -4.28 -1.92 -1.77 - - -1.03 -
-0.0 - - - - - - 1.14 - - - - - - 3.68 -
-5.41 - -0.09 0.24 3.32 1.54 - - - - -2.36 -2.47 - - -0.73 -
- - -2.45 -2.57 - -4.19 -1.91 0.91 1.31 -0.59 2.08 2.6 - - - -
1.78 - - - 0.65 -0.76 - - 1.14 1.19 1.93 1.06 - - - -
- -0.15 - -4.09 -0.39 -1.14 1.11 -0.02 0.73 0.37 1.79 1.97 - - -1.54 -
-1.41 - - - - -0.63 - 2.97 0.98 2.36 - - - - - -
-6.1 -8.21 0.99 1.56 1.43 1.68 -0.64 -1.73 -1.27 0.04 0.34 0.58 - -8.65 - -8.67
- - - - - - - - - - - - - - - -
-2.98 -3.88 -3.14 -3.91 2.32 1.12 -4.02 2.23 0.82 0.62 -2.8 -2.49 - -6.23 -4.16 -
- - - - 4.0 - - - - - - - - - - -
- - -0.24 -0.49 -2.44 -1.21 -1.73 -5.4 -5.61 -5.56 2.72 2.78 - - - -
- - -2.38 - -1.25 -1.09 1.67 2.85 -2.8 - 0.61 1.51 - - - -
- 4.0 - - - - - - - - - - - - - -
-0.3 0.17 0.37 0.7 1.44 2.9 - - -2.51 - - -1.52 -1.17 - - -
1.71 3.67 - - - - - -5.35 - - - - - - - -
0.32 - - - - - - - - - - - - 2.62 3.1 -
-4.89 -5.8 1.77 1.68 1.93 1.55 -1.15 -5.31 -3.44 -5.16 0.12 -0.14 - - - -
- - 0.9 1.23 0.82 2.06 -2.57 0.31 - - - - - -1.08 1.99 -
- 4.0 - - - - - - - - - - - - - -
2.54 3.35 - - - - - - - - - - - - - -
- - 1.62 0.37 0.16 2.32 - -4.95 - - -0.62 -1.72 - - 2.18 -
-7.87 - 2.71 2.69 0.99 -0.8 -5.55 -3.98 -5.51 -4.19 -3.06 -3.32 - -7.59 -5.52 -
- 0.95 -0.48 1.85 - - -1.15 -0.82 0.1 1.74 0.19 1.67 - - - -
- - 0.14 0.38 1.58 2.02 1.61 -0.49 -4.29 - -0.06 0.72 - - -2.98 -
-7.36 -6.11 -0.4 -0.67 2.29 2.4 1.66 -6.21 - - -1.24 -0.24 - - - -
- - 1.85 1.86 1.65 1.08 - -3.15 0.12 - 1.21 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.