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Heatmap: Cluster_32 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 2.58 1.67 -0.32 -0.81 -0.97 -0.71 -3.66 -3.76 1.62 -0.69 -2.83 -1.73 -4.66 -5.76
-2.09 -1.82 -1.64 -2.65 -0.56 -0.84 0.84 -2.5 -5.19 -6.71 -1.36 -1.23 1.52 2.41 0.84 -0.03
0.52 2.22 -1.25 -0.91 -3.41 -2.64 1.66 -0.05 -0.31 -0.57 0.33 -0.28 -1.46 -1.3 -4.28 -2.4
-3.51 -2.56 - - - - -3.84 -2.78 - - - - 2.43 2.25 -1.29 2.31
0.62 -0.31 -2.61 -2.98 -2.22 -2.1 -0.39 0.99 1.5 0.64 -2.97 -2.03 0.66 0.63 -0.15 0.46
- - - - - - - - - - - - - - - -
0.16 -0.32 -1.75 -1.47 -2.82 -1.75 -1.39 -1.46 -0.77 -1.57 -0.9 -1.1 1.39 2.19 -0.19 1.17
0.04 -2.2 -2.38 -1.96 -1.82 -0.62 1.0 0.62 0.11 0.16 0.82 -0.04 0.7 0.72 -1.24 0.24
-0.71 -0.49 -1.51 0.08 -0.9 -1.54 0.42 -0.66 -3.52 -2.05 0.82 0.09 1.09 1.14 0.21 0.81
0.91 -5.94 -2.4 -3.04 -1.88 -2.44 -5.23 -3.92 -0.35 -1.17 -6.36 -6.47 2.62 1.7 -0.13 0.76
0.51 -1.44 -4.2 -2.6 -2.9 -3.32 -0.02 1.44 1.48 0.66 -0.02 -0.34 0.44 0.41 -1.22 -0.33
-0.32 0.06 - - - -5.49 -2.32 -1.1 0.02 1.06 -0.5 -1.99 1.6 1.49 -0.11 1.4
-2.32 -4.61 1.34 1.37 1.02 1.09 -1.34 -1.89 -2.0 -2.2 0.75 0.05 -0.65 -0.73 -0.28 -0.76
-1.18 -2.15 -7.12 -4.98 -5.18 -3.57 -2.05 1.64 2.15 2.4 -2.76 -3.98 -1.39 -0.83 -0.94 -1.19
0.22 -6.17 1.08 0.1 -0.31 -0.06 -0.41 2.44 -1.73 -0.97 -1.1 -0.76 -0.87 -0.16 -3.68 -1.67
- - - - - - - - - - - - 2.89 2.38 - 1.76
0.08 -1.64 -1.75 -2.08 -0.89 -1.29 0.58 0.61 1.2 1.2 0.31 -0.35 0.14 -0.23 -0.67 -0.13
-0.75 0.07 -0.09 1.07 0.03 0.77 -0.35 0.13 -1.2 -0.88 1.44 0.58 -1.08 -0.62 -2.35 -2.28
0.73 -0.31 -1.96 -2.4 -2.16 -1.94 0.97 0.27 0.05 -0.66 -0.19 -1.84 0.98 0.72 0.47 0.68
0.15 -1.7 -2.48 -2.77 -2.37 -1.36 -0.98 1.57 1.1 1.71 -0.78 -1.19 0.17 0.07 -0.72 -0.01
0.85 1.17 -1.69 -1.27 -2.03 -1.4 0.61 -0.67 -0.04 -0.08 0.36 -0.7 0.48 0.57 -0.97 0.32
-2.29 -1.15 0.2 0.15 0.33 -0.67 1.39 1.41 -0.6 -0.22 0.21 -0.2 -0.55 -0.64 -1.19 -0.7
-0.14 -0.42 0.01 0.5 -0.06 0.63 0.5 -2.64 -3.38 -1.83 1.01 -0.02 0.53 0.74 -1.14 -0.14
-0.51 -2.45 -2.67 -3.48 -1.88 -1.39 -0.86 -0.01 - -7.77 -1.33 -2.17 1.79 2.4 0.56 0.89
-1.49 -2.73 -0.98 -0.55 0.39 -0.01 0.39 -1.02 -0.43 -0.68 2.26 1.01 -0.68 -1.45 -0.68 -1.34
- - - - - - - - - - - - 1.76 2.08 1.67 2.38
0.27 -0.38 -0.86 -0.4 -0.3 -0.44 0.49 -0.02 0.25 0.04 0.21 -0.63 0.72 0.43 -0.58 0.13
-0.25 -1.74 -2.99 -2.87 -2.35 -1.66 -0.47 -0.83 -4.21 - -0.59 -1.22 1.07 1.6 1.55 1.85
-3.7 -6.0 1.27 1.48 1.69 1.44 0.41 -3.64 -2.04 -2.14 0.32 -0.04 -2.24 -2.03 -3.51 -2.94
-6.19 -2.33 -6.61 -4.86 -6.06 -4.77 -5.28 -4.51 -5.03 -4.75 -2.82 -3.23 2.13 2.4 1.67 1.3
-1.56 -0.13 0.2 0.42 0.17 -1.13 -0.84 0.3 1.69 1.5 0.47 -0.5 -1.94 -2.08 -3.72 -2.63
2.15 1.51 -2.59 -2.95 -2.12 -3.44 -1.47 -0.42 -1.17 -1.57 -1.47 -0.84 0.77 0.31 -0.21 0.56
-1.07 - -1.89 -1.46 -3.35 0.13 -5.47 -4.88 - -0.98 -4.12 -2.9 2.18 2.83 -1.87 0.05
0.74 -1.79 -3.01 -2.07 -1.19 -1.93 -2.93 -1.65 -1.68 -1.81 -2.13 -3.23 2.01 1.69 0.22 1.66
-0.4 0.12 0.58 0.66 0.46 -1.06 -1.24 -1.56 -4.38 -4.32 -3.87 -1.66 1.55 1.2 0.34 0.56
0.62 -1.22 -0.51 -2.02 0.98 0.71 -0.59 -0.59 -1.78 -1.72 -1.01 0.05 1.14 0.46 -1.79 1.11
-0.12 -0.94 -1.4 -1.8 -0.65 -0.48 -0.43 -0.44 -1.44 -1.59 -0.76 -1.53 1.8 1.16 0.51 1.18
-3.13 -3.88 - -5.68 -4.59 -5.3 -0.49 -1.18 -2.34 -2.15 -4.4 -3.93 1.84 2.26 1.39 1.61
-6.39 - -0.1 0.16 2.84 2.16 -2.93 -5.1 - -5.84 -5.81 -3.91 -0.9 -0.7 -0.63 -2.14
1.34 0.16 -1.85 -2.61 -1.18 -0.98 -1.43 -1.64 -3.3 -2.5 -2.24 -1.94 1.23 1.49 0.96 1.27
-0.94 -1.09 -1.6 -1.64 -1.02 -0.47 0.3 2.1 0.48 -0.44 -0.94 -1.56 0.44 0.31 -0.05 0.09
-2.38 -1.4 -2.01 -1.92 -2.56 -1.36 -1.09 -0.85 1.55 1.93 0.88 0.44 -0.06 -0.07 -1.34 0.13
-0.05 1.92 -1.37 -0.94 -0.37 0.13 -0.68 -0.62 -0.46 -0.54 1.19 0.46 -0.6 -0.7 -1.18 -1.25
-8.46 0.75 -2.1 -2.3 0.57 0.26 -1.42 2.2 0.42 1.22 0.35 -0.5 -2.03 -1.95 -5.81 -4.1
-5.3 -4.09 2.09 1.63 1.93 1.61 -0.82 -5.46 -5.94 -7.78 -0.9 -2.06 -3.92 -3.28 -3.83 -3.63
-7.0 0.17 -1.77 -1.51 -1.87 -1.33 0.74 2.18 -1.67 -0.57 0.47 0.24 0.2 0.58 -2.28 -0.06
-1.06 -4.25 -3.33 -1.08 -1.73 -1.63 -1.13 0.16 - -5.57 -2.12 0.21 1.97 1.72 1.05 0.99
-3.8 -0.55 0.24 -0.13 0.26 1.07 1.09 1.29 -2.57 -0.85 0.58 0.05 -0.54 -0.35 -2.15 -1.6
-4.9 - -3.86 - -1.81 -1.4 0.16 -0.38 0.05 -0.43 -0.23 -1.57 1.75 1.7 0.03 1.45
- - - - - - - - - - - -0.12 2.76 1.08 - 2.63
-5.66 - 0.24 -0.67 2.71 1.85 -0.5 -1.49 - - -2.86 -2.86 -0.03 -0.02 -2.74 -0.83
- - -1.02 -1.03 -0.9 -1.86 0.07 -0.84 -3.12 -4.13 -1.23 -2.18 2.13 1.62 0.83 1.36
0.55 -1.4 0.62 0.38 1.26 0.84 -0.56 -1.01 -1.93 -1.51 -0.25 -1.29 0.85 -0.25 -0.84 -0.2
- - - - - - - - - - - - - - - -
-0.52 -1.6 -1.25 -1.69 -1.17 -1.11 0.72 0.37 -1.78 -2.4 -1.5 -3.75 1.42 1.61 0.98 0.84
0.62 -0.42 -1.91 -2.67 -1.23 -0.7 1.09 0.34 - - - - 1.52 1.3 0.5 1.08
0.19 -0.37 -2.79 -2.57 -1.58 -2.03 0.15 -0.23 -0.09 -1.23 -0.86 -2.3 1.46 1.35 0.85 1.0
-8.97 -9.03 0.19 0.17 0.52 0.08 1.29 0.06 0.11 -0.4 0.53 -1.37 0.63 -0.06 -0.57 -0.14
- - - - - - - -4.23 - - - -4.7 2.57 3.12 - 0.32
-1.63 1.51 - - -3.37 -4.06 -3.41 2.06 -1.62 -1.68 - - 1.02 1.31 -0.03 1.2
-4.71 - 1.73 1.08 0.13 2.41 -4.22 -3.16 -3.42 -3.91 1.27 -0.14 -3.02 -1.68 - -5.08
-4.62 - 1.59 1.59 -0.7 -0.28 - -2.83 - -3.2 0.74 -3.27 1.25 1.84 -0.94 -
-1.89 0.7 -2.9 -1.62 -1.17 -2.72 -2.54 0.34 -1.0 -3.21 0.16 0.54 1.55 1.96 -1.81 0.42
-3.26 -4.98 -8.36 - -5.65 -6.4 -8.03 -2.14 -4.48 -6.74 - - 2.44 2.56 0.99 1.17
0.41 -2.65 -2.32 -2.32 -5.06 -4.65 -2.04 -1.18 1.82 1.53 -0.71 -1.42 1.06 0.51 -0.43 0.77
-2.24 -2.94 1.21 1.68 0.89 0.79 1.18 -1.61 -2.34 -1.71 0.77 -0.02 -1.8 -1.85 -4.31 -2.65
-0.87 -0.89 -1.62 -1.65 -1.2 -0.32 1.38 -0.41 -0.24 0.31 1.37 0.46 0.09 0.14 -0.76 -0.17
-2.52 -0.17 0.72 1.01 0.87 -0.13 1.12 0.53 -0.57 -1.83 -0.18 -0.09 -0.49 -0.6 -1.81 -1.04
-0.83 0.07 -0.75 -1.22 -0.61 -0.14 -0.43 -1.87 -5.03 -3.82 -3.14 -1.53 1.39 1.72 1.13 1.08
0.76 -6.48 -3.38 -5.19 -5.47 -5.95 -5.42 1.73 1.43 2.28 -3.22 -3.12 -0.09 0.54 -1.99 -1.48
0.37 -0.3 -0.48 -0.68 -0.81 -0.09 1.23 -0.13 0.45 0.71 0.42 0.46 -0.77 -0.73 -1.34 -1.08
-1.07 -0.8 -0.92 -0.56 -1.06 0.51 0.49 -0.9 -2.75 -3.13 1.17 0.78 0.76 1.12 -0.11 -0.23
0.12 -0.68 -2.14 -1.7 -2.13 -0.87 1.26 -0.88 -1.17 -0.45 0.42 -0.57 0.98 0.37 0.63 1.04
-0.24 1.46 -1.8 -3.08 -1.91 -1.44 -1.15 -0.15 -1.08 -0.66 -1.66 -1.55 1.26 1.63 0.05 0.79
1.31 0.64 -2.45 -2.57 -0.8 -0.46 -1.3 -1.68 -0.81 -1.4 0.99 -0.13 0.83 0.31 0.01 0.79
-0.1 -1.32 -5.51 -5.18 -4.14 -6.2 -1.77 -0.76 2.49 1.24 -3.17 -3.88 0.89 1.05 -0.46 -0.26
-2.85 -2.81 -4.81 -5.43 -4.85 -3.0 0.62 2.47 1.68 1.58 -0.59 -1.15 -1.39 -1.52 -2.68 -2.05
0.63 0.37 -1.02 -1.58 -1.32 -0.06 -0.15 0.19 0.74 0.21 -0.23 0.42 -0.63 0.34 0.02 -0.02
- - 2.17 2.85 -0.48 -0.08 -3.08 -4.31 -2.64 -4.58 -0.15 -0.22 -2.72 -2.0 -3.33 -
-1.88 -3.04 -0.09 -0.76 1.32 0.63 -0.96 -1.22 -1.2 -2.46 -0.84 -1.53 1.91 0.81 -1.2 0.7
-0.32 -0.62 -1.13 -0.08 -1.53 0.01 -0.34 -0.42 -3.03 -2.31 -0.39 -0.63 1.38 1.15 0.1 1.38
-0.5 0.44 -2.45 -2.06 -1.92 -2.12 0.11 0.81 1.12 1.6 -0.36 -0.94 0.1 0.33 -0.95 -0.28
-5.68 -9.75 -3.49 -3.16 -2.76 -2.38 -0.57 -2.41 -6.3 -5.75 -0.28 -0.48 2.26 1.84 0.8 1.53
-0.26 0.56 -0.79 -0.99 -1.3 -1.62 -4.6 -0.84 -0.66 -1.73 -3.63 -1.51 1.53 1.58 0.86 1.14
-1.81 -0.55 1.81 1.32 0.7 1.17 -0.95 -1.54 -1.88 0.08 -1.27 -0.79 -0.93 -0.87 -1.16 -1.07
-5.94 -10.75 -2.85 -2.2 -0.19 -2.12 -1.64 -0.17 0.27 -0.27 -1.67 -2.51 1.9 1.43 1.15 1.11
-0.38 -3.36 0.43 0.12 1.02 0.43 0.79 -0.91 -1.95 -2.4 -0.69 -1.32 0.78 0.31 -0.52 0.95
- - -1.56 - -0.45 -0.0 - - - - - - 2.34 3.15 - -
0.92 -1.12 -2.28 -1.64 -0.98 -2.24 1.42 1.99 -4.36 -1.68 -1.04 -0.62 0.4 0.38 -1.84 0.43
-5.01 -6.11 -1.2 -1.59 -2.91 -2.3 1.66 0.38 -4.2 -2.49 -6.11 -4.45 1.58 1.47 0.88 1.32
0.89 1.24 -1.72 -2.46 -1.75 -2.35 -0.04 -0.85 -0.74 -1.1 -1.13 -0.47 0.62 1.02 0.75 0.83
1.04 -0.03 -2.5 -1.15 -1.6 -1.11 0.72 -0.08 -0.26 0.36 1.17 0.55 -0.22 -0.09 -2.26 0.15
1.16 -7.23 -3.17 -4.19 -3.65 -1.85 -0.26 2.48 - -7.06 -3.32 -1.48 0.84 1.31 -0.28 0.35
-1.73 -4.17 -5.07 -4.96 -3.63 -2.91 -3.34 0.26 -4.07 -4.64 -3.22 -4.33 2.0 2.43 1.11 1.17
1.34 0.09 0.3 0.71 -0.02 1.22 0.29 -1.09 -2.59 -2.91 -0.95 -1.83 0.17 -0.3 -0.67 -0.19
0.49 -2.06 -3.81 -3.54 -2.87 -2.42 0.02 -1.61 -4.43 -2.37 -0.95 -1.7 1.58 1.66 1.25 1.56
2.19 -0.61 0.31 0.73 0.4 0.5 -0.5 -0.29 -6.98 -6.41 -0.61 0.09 -1.05 -0.99 -1.26 -1.04
-1.26 -3.1 - - - - - -4.17 - - - - 2.31 2.67 0.88 1.17
-1.92 -0.68 -4.16 -3.51 -3.03 -1.56 -4.25 -4.67 -0.22 -0.28 -2.04 -1.51 1.89 1.92 1.1 1.33
0.06 0.57 -1.4 -0.57 -1.12 -0.73 0.68 -0.67 0.57 0.05 0.39 -0.0 0.32 0.26 -0.3 0.06
-1.16 -0.39 0.3 0.6 0.69 1.39 -0.98 -0.48 0.33 0.52 0.56 0.29 -1.58 -1.39 -2.47 -1.77
-0.18 - -3.8 -6.12 -3.33 -5.26 -2.63 -4.36 - - -6.35 -2.46 1.85 2.65 1.51 0.81
2.3 -0.21 -3.85 -3.16 -3.05 -1.64 -0.97 0.0 -0.35 -0.45 -0.75 -1.29 0.54 0.68 0.04 0.55
-8.01 -6.76 - - -1.1 -1.6 1.55 0.67 0.33 -0.1 0.28 -1.89 0.97 0.9 0.27 0.97
-4.87 -3.39 -3.36 -1.89 -1.3 -2.91 -0.31 -0.83 - - -5.02 - 1.92 2.2 0.91 1.72
-2.4 - - - - - - -7.02 - - - - 1.93 2.92 1.27 1.02
-8.61 -5.77 1.44 0.66 1.01 0.89 -1.88 -0.32 2.01 0.34 -1.69 -1.15 -2.16 -1.6 -4.94 -3.23
-1.52 -2.47 -2.33 -2.32 -3.2 -1.55 -1.46 -0.81 - - -2.67 -2.51 2.2 2.33 0.56 1.19
- - -1.95 -2.48 -2.98 -2.99 0.7 1.28 -0.61 -3.64 -0.51 -2.25 1.82 1.24 -0.07 1.47
- -8.1 1.86 2.12 1.04 2.07 -3.9 -3.55 -2.77 -5.33 -0.45 -1.08 -5.64 -2.69 -4.66 -
-1.88 -2.29 -0.94 -0.79 0.45 0.01 1.1 0.43 -0.21 -0.3 0.35 -1.15 0.85 0.37 -0.81 0.59
0.93 1.59 -2.07 -2.4 -1.66 -1.4 -0.34 -1.02 0.29 -0.09 -0.23 -0.18 0.25 0.01 -0.37 0.87
- -6.54 - - - -6.05 - - - - - - 2.66 2.18 0.88 1.71
2.93 -2.02 -1.02 -1.37 -0.31 -0.11 -1.15 -0.86 -2.83 -2.42 -1.05 -1.78 -0.38 -0.39 -0.44 0.17
- - - - - - - - 4.0 - - - - - - -
-3.45 - - - - - -7.41 -2.07 - - - - 2.14 2.49 1.28 1.68
0.59 0.9 -2.94 -1.2 -1.13 -2.15 0.58 1.56 -0.1 -0.37 -0.74 -0.57 -0.15 0.46 -0.95 0.23
-0.93 1.27 -0.83 -0.6 0.69 1.1 -4.13 -1.78 -1.51 -2.01 -2.05 -1.52 1.03 1.39 -0.71 0.32
-0.36 -2.77 -0.75 -1.59 -6.27 - -0.89 -1.5 - - - - 2.13 2.0 1.14 1.42
0.92 2.47 -0.65 -1.86 -0.58 -1.87 -2.83 -2.39 0.84 1.4 -1.77 -1.3 -2.25 -1.02 -3.01 -1.3
-0.12 -1.45 -2.39 -2.97 -2.04 -2.17 -1.1 0.35 -0.08 1.39 -1.78 -2.15 1.24 1.23 0.54 0.95
-3.48 -3.73 -0.21 0.49 0.61 -0.26 2.46 0.61 -4.54 -3.86 0.4 -0.18 -0.93 -0.11 -2.45 -2.06
-1.8 - -1.11 -1.76 -2.27 -0.77 0.44 -0.72 0.52 0.68 0.82 -0.51 1.44 0.37 -0.28 0.9
-2.97 -3.68 -3.85 -4.93 -3.88 -3.31 -0.78 -1.68 -9.61 - -3.47 -2.75 1.89 2.42 0.91 1.78
1.67 -6.35 -0.3 0.39 -0.01 0.22 2.22 -3.71 -5.03 -7.77 0.63 0.69 -2.2 -2.06 -5.36 -3.18
2.77 - -2.28 -4.11 -4.33 -5.48 - -3.23 - - - - 1.54 1.78 -0.57 0.79
-4.31 -4.95 0.6 0.94 1.95 1.11 1.16 -2.26 -1.29 -0.34 -0.06 -0.69 -1.45 -1.75 -2.8 -1.21
0.32 -0.65 -2.84 -2.1 -2.15 -1.75 1.28 0.19 0.55 0.01 0.15 -0.64 0.55 0.51 -0.16 0.72
-0.95 -1.0 -0.74 -0.48 -1.52 -1.28 0.65 -0.41 0.04 -1.09 0.03 -1.33 1.43 1.11 0.09 0.81
-0.3 0.28 -1.24 -1.33 -1.58 -2.78 1.0 -0.29 0.58 -0.05 0.3 -1.45 0.96 0.36 0.03 0.62
-0.04 -1.7 -1.7 -1.38 -3.21 -2.69 0.15 -0.49 -1.66 -2.63 -1.44 -2.97 1.85 1.65 0.85 1.27
-2.85 - - - - - -7.3 -2.56 - - - - 2.55 2.4 0.7 1.53
-4.03 -1.53 -0.95 -1.05 -0.44 0.53 0.99 -0.1 1.59 1.29 -0.38 0.43 -0.52 -0.63 -2.13 -1.53
-3.0 -2.63 -4.08 -3.45 -5.57 -4.98 -1.05 3.15 1.27 1.24 -2.02 -3.18 -1.82 -2.09 -3.34 -1.31
-0.17 1.97 - - - - -5.13 -2.07 0.15 0.06 -2.76 -3.28 1.15 0.84 -0.25 1.88
-0.38 -1.66 -0.63 -0.71 -0.73 -0.99 1.03 0.31 - - - - 1.36 1.33 0.86 1.24
-0.07 -1.03 -2.46 -3.0 -2.65 -1.84 -0.62 -1.49 -2.87 -2.08 -2.36 -1.99 1.63 1.67 0.99 1.89
-0.02 -0.36 -1.89 -1.68 -1.77 -1.86 0.42 -0.21 0.21 -0.61 -0.44 -1.6 1.17 1.05 0.64 1.09
0.06 1.45 - -6.09 - - -5.51 2.08 - - - - 1.33 1.46 -0.95 1.12
2.66 0.1 -3.82 -6.8 -3.01 -2.9 -3.29 0.05 -2.03 -0.91 -2.65 -2.24 0.58 1.05 0.27 0.29
-2.15 -4.33 0.49 -0.11 -0.12 0.25 1.04 -2.42 -6.89 - -2.27 -0.39 0.9 0.91 1.42 0.73
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.