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Heatmap: Cluster_230 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.65 -3.88 1.87 2.03 1.4 1.93 -1.59 -1.92 -3.53 -3.49 -1.51 -1.68 -4.96 -5.08 -3.81 -4.61
-0.3 -0.61 -2.22 -4.1 -2.82 -3.06 -3.13 2.45 1.43 1.06 -5.84 -4.36 -0.21 0.09 -0.29 -0.3
-2.75 -0.78 -5.14 -4.59 -2.65 -3.07 1.25 -0.24 -4.61 -3.82 -0.7 -0.55 1.38 1.72 0.54 1.56
0.39 -0.68 -0.73 -0.44 0.19 -0.58 0.26 -1.64 -1.39 -2.02 -0.89 -0.98 0.53 1.19 0.9 1.09
-2.67 -2.68 -2.7 -3.29 -0.98 -3.65 -3.65 -1.45 -6.22 -5.16 -4.12 -3.64 1.93 2.44 1.01 1.56
0.33 0.93 -2.4 -4.39 -3.6 -2.43 -1.87 -0.61 - -5.08 - - 0.91 2.14 1.27 1.41
-0.18 -2.89 -5.1 -4.71 -5.14 -3.86 -2.24 0.36 0.04 1.49 -2.18 -1.89 1.42 1.49 0.59 1.0
0.09 0.43 -3.03 -2.54 -1.18 -1.97 1.03 0.71 -3.31 -3.05 -0.22 1.16 0.43 0.7 0.18 0.59
- - -2.27 -3.42 -1.7 -1.88 0.89 0.28 -1.11 -1.82 -0.19 -1.63 1.72 1.46 -0.04 1.63
0.74 0.37 -0.54 -0.2 -0.46 -0.43 0.64 -0.14 0.11 -0.29 -0.03 0.39 -0.15 -0.34 -0.63 0.05
-0.64 0.19 -3.15 -2.24 -1.9 -1.31 -1.95 -1.29 -4.17 -4.11 -5.07 -3.18 1.5 2.47 0.47 1.34
-2.14 -4.84 -2.55 -3.81 -2.54 -2.36 -1.26 -0.19 -3.41 -1.71 -2.87 -2.34 1.66 2.14 1.35 1.58
-3.65 -2.48 1.41 0.88 1.62 0.75 -2.01 0.23 -1.19 -0.78 -0.86 0.15 -0.35 -0.06 -3.08 -0.9
1.31 0.1 -2.58 -3.07 -2.11 -1.35 -1.15 -2.05 -0.85 -0.37 0.15 -0.79 0.93 0.8 0.43 1.5
-0.92 -0.87 -1.13 -2.3 -0.57 -0.45 -1.85 -1.28 -4.16 -3.73 -2.29 -2.74 1.75 2.07 0.56 1.39
-0.05 -0.19 -0.59 -1.01 -0.44 -0.43 1.05 0.17 0.06 -0.15 0.28 0.46 -0.08 -0.12 -0.18 0.07
-1.3 -1.05 -3.68 -3.81 -2.31 -1.32 -2.2 -0.76 1.41 1.42 1.29 0.96 0.02 0.53 -1.09 -0.14
-5.89 -2.42 2.26 1.95 2.04 0.92 -2.56 -4.63 -7.08 -7.01 -1.52 -1.49 -4.03 -4.3 -4.18 -4.37
-6.91 -4.88 -6.57 -8.14 -7.14 -5.76 -6.53 -3.09 - - - -9.64 1.8 2.21 1.91 1.98
0.56 0.97 0.1 -0.23 0.76 0.31 0.09 0.16 -1.12 -1.94 0.15 0.42 -0.31 -0.31 -2.53 -0.79
1.06 0.67 -1.09 -0.47 -1.1 -0.24 0.41 -0.57 0.32 0.31 0.09 -0.11 -0.46 -0.3 -0.41 0.06
-1.43 -3.61 0.78 0.73 1.07 0.45 0.07 -1.76 -4.69 -4.3 -1.46 -1.53 0.97 0.93 0.28 0.58
-3.42 - -2.61 -3.19 -1.92 -2.1 -2.53 -1.55 - - -7.8 -5.32 2.03 2.28 1.83 1.06
-0.58 -3.11 -0.41 -0.63 -0.21 0.24 0.36 -0.06 - -6.83 -3.58 -0.57 0.86 1.05 1.62 0.84
-1.76 -2.08 -2.4 -2.39 -2.07 -2.35 -0.9 -1.7 -6.67 -7.42 -3.47 -3.01 1.78 2.0 1.8 1.42
-0.6 0.96 0.36 0.08 0.37 -0.7 0.03 -0.12 0.11 0.49 -0.21 0.34 -0.53 -0.49 -1.18 -0.46
-2.74 -3.26 0.02 -0.6 -0.08 0.13 -1.73 -1.35 -2.91 -3.54 -3.64 -3.17 1.36 1.9 0.95 1.42
0.13 0.6 -0.26 -0.84 -0.46 -1.55 -0.94 0.54 0.75 0.64 -2.23 -1.61 0.59 0.18 -0.32 0.81
-1.93 -0.56 -1.83 -4.03 -1.59 -0.86 -1.5 -2.04 -4.68 -3.52 -2.87 -2.14 1.79 1.91 1.66 1.24
-0.52 0.13 -2.31 -1.29 -0.54 0.03 0.24 -0.97 -1.29 -1.91 -1.36 -1.43 1.27 1.46 0.89 0.81
-0.78 -2.39 -3.32 -3.68 -1.96 -1.78 -0.35 -1.13 -0.56 1.44 0.09 -0.25 1.25 1.16 0.25 1.11
-0.91 -7.02 -5.47 -7.14 -4.83 -3.81 -4.15 -3.62 -4.32 -3.84 -6.81 -6.91 1.28 0.8 2.7 2.13
-1.92 -1.85 0.89 -0.99 0.76 -0.31 -3.17 1.29 0.31 -0.3 -3.92 -2.86 1.03 0.01 0.21 0.66
-1.17 -1.72 1.2 1.22 0.49 0.58 -0.6 -0.52 0.24 0.47 0.4 -0.04 -1.32 -1.2 -1.76 -1.36
-4.06 -3.3 1.91 1.23 2.42 1.36 -2.97 -3.52 -5.64 -6.46 -2.75 -2.16 -1.58 -2.33 -1.42 -1.94
-1.22 -2.21 -1.11 -2.08 -2.2 -1.32 0.34 0.41 0.55 0.95 0.36 -0.0 0.87 0.78 -0.44 0.57
-0.2 -1.09 -0.97 -0.49 -0.4 -1.01 1.26 -0.04 0.08 0.1 0.05 -0.29 0.57 0.15 -0.36 0.55
0.23 0.38 0.34 1.29 0.41 1.46 -1.59 -2.87 -4.0 -4.1 -2.2 -2.4 0.57 0.67 -0.44 -0.11
0.12 0.85 -1.65 -1.18 -1.11 -0.85 -0.09 -1.08 0.21 -0.21 0.37 0.23 0.63 0.41 -0.53 0.89
-2.83 -0.82 0.66 -0.2 0.53 -0.6 -3.46 -2.3 -4.25 - -2.64 -1.26 1.39 1.82 0.43 1.22
-2.78 -4.37 -5.21 - -4.34 -4.67 -4.46 -4.5 - - -6.11 -7.22 2.11 2.35 1.74 1.5
0.03 0.17 0.29 0.05 0.78 0.51 -0.38 -1.14 -1.74 -1.67 -0.84 -0.73 0.29 0.29 0.78 0.37
-1.5 0.17 -0.79 -0.97 0.65 -0.26 -0.07 0.26 0.81 -0.0 -0.91 -0.35 0.51 0.71 -0.84 0.24
-4.96 -2.37 -2.38 -2.61 -2.28 -1.75 -5.65 -5.81 -5.34 -6.87 -5.24 -3.47 1.82 1.82 2.28 1.49
-4.98 -3.52 1.49 0.85 1.9 2.11 -3.3 -3.25 -4.92 -3.39 -2.68 -2.75 -0.23 -0.78 -0.42 -1.35
-1.57 2.84 -3.83 -3.22 -3.82 -1.59 -3.14 -2.26 -4.73 -2.53 -3.5 -3.15 0.97 1.18 0.56 0.59
-1.17 -1.43 -3.5 -3.6 -4.31 -3.29 -0.42 0.41 0.95 1.33 -1.61 -2.3 0.94 0.92 0.36 1.45
0.38 0.77 -1.17 -1.61 -1.5 -1.19 0.59 0.26 0.36 0.09 0.16 0.32 -0.05 0.04 -0.33 0.3
0.5 0.24 -0.3 -0.12 -0.2 0.14 0.18 -0.88 -0.03 0.5 0.19 -0.07 -0.26 -0.2 -0.13 -0.13
-2.95 -7.66 -3.19 -4.54 -2.43 -2.32 -2.84 -2.7 - - -7.48 -4.42 2.21 2.37 0.75 1.81
-1.71 -0.94 0.29 1.4 1.31 1.72 -0.25 -1.91 -2.42 -2.0 -1.2 -1.17 -0.33 -0.18 -1.2 -0.02
-2.45 -0.24 1.31 1.05 0.07 0.11 1.21 -1.04 -3.04 -1.37 -0.82 -0.67 0.3 0.45 -1.64 -0.21
-0.05 0.01 -1.32 -1.73 0.24 0.26 0.06 -0.51 -0.12 0.05 0.33 0.23 0.45 0.31 -0.6 0.64
-0.95 -1.8 0.88 1.05 0.55 0.69 -0.9 -1.48 -0.48 -0.26 0.26 0.16 -0.23 -0.35 -0.52 0.16
-1.62 -3.52 -2.44 -3.51 -1.58 -1.28 -0.2 -1.58 -5.95 -7.31 -1.52 -1.93 2.03 1.8 1.13 1.57
-5.03 -5.93 0.82 0.75 0.61 0.03 -1.09 -1.41 -5.21 -4.63 -1.65 -1.63 0.9 1.24 0.54 1.45
0.06 -1.02 -1.72 -2.97 -1.37 -0.8 -0.58 0.18 - - -4.01 -1.63 1.37 1.62 1.53 1.23
-1.9 -2.08 1.66 0.75 -0.96 -0.88 -1.16 -0.79 -0.21 -0.43 -0.99 -1.74 0.36 -0.29 1.36 0.59
-3.16 -4.81 -4.24 -4.36 -3.66 -3.58 -4.99 -2.55 -6.31 -8.25 -5.71 -4.73 1.93 2.14 1.86 1.79
-2.75 -3.33 -0.78 -0.94 0.34 0.05 0.89 0.3 -3.58 -2.04 0.1 0.42 0.83 0.95 0.35 0.61
-2.07 -1.87 -1.29 -1.02 -0.98 -1.34 -0.93 -1.33 -2.42 -3.21 -2.15 -1.9 1.83 1.93 0.95 1.43
0.37 0.04 -2.22 -1.62 -1.41 -1.43 0.06 -0.28 0.29 0.64 0.38 -0.13 0.92 0.78 -0.2 0.07
-0.79 -1.16 -0.47 -0.76 -0.57 -0.34 -0.29 -0.11 -0.34 -0.17 -0.18 -0.33 1.04 1.01 0.04 1.0
-5.98 - -2.11 -2.4 - - -1.95 0.02 1.13 1.19 -2.47 -2.03 1.73 0.59 0.92 1.43
-1.74 -5.83 -5.43 -7.06 -9.0 -6.23 -5.43 -1.09 -10.15 - -7.73 -6.35 2.08 2.26 1.46 1.75
-0.87 -0.32 -0.83 -0.75 -0.26 0.74 0.37 -0.86 -0.01 -0.56 0.43 0.19 0.58 0.4 -0.48 0.54
-1.71 -4.04 -4.43 -5.97 -5.1 -3.51 -1.86 -1.47 -10.26 -7.61 -5.26 -2.99 2.19 2.08 1.35 1.73
0.32 0.03 -0.79 -0.15 -0.86 -0.89 0.43 -0.28 0.23 0.23 0.53 -0.17 0.39 0.36 -1.01 0.29
-2.08 -2.0 -4.37 -5.62 -3.82 -3.73 -1.78 -1.1 -2.09 -1.89 -4.15 -2.8 1.73 2.1 1.46 1.8
-0.92 -1.49 -0.83 -0.02 -0.04 -0.45 -0.2 0.06 -1.78 -3.06 -1.3 -3.12 1.79 0.98 -0.55 1.55
0.9 -1.96 -2.95 -3.06 -1.35 -1.4 -4.71 -5.57 -6.46 -4.59 -2.66 -2.47 1.46 1.45 1.94 1.62
-0.84 -3.42 -0.83 -1.44 0.37 1.09 0.35 0.81 -0.36 -1.25 -0.68 0.35 0.44 1.03 -2.66 0.4
-0.46 -0.68 -2.73 -2.78 -1.26 -2.55 -1.38 -0.18 1.27 2.17 -1.33 -1.96 0.47 0.23 -0.05 0.49
3.55 -3.71 -3.37 -4.26 -2.65 -2.89 -1.39 -2.79 -3.02 -4.54 -2.05 -1.62 -0.35 -0.5 -1.7 -0.58
-0.84 -1.31 -0.26 -0.41 -1.1 -1.17 -0.03 -0.56 -1.05 -1.75 -0.37 -0.33 1.25 1.34 0.45 1.17
-1.87 -1.51 -0.44 -0.07 -0.08 0.14 -2.63 0.88 1.53 0.49 -3.62 -2.5 0.75 0.24 0.2 0.1
-3.49 -1.56 0.39 0.73 1.58 1.47 -0.55 -1.42 -4.74 -5.1 0.14 0.51 -0.62 -0.41 0.2 -0.67
-1.15 0.17 -4.76 -5.91 -4.26 -4.14 -2.4 0.96 2.06 2.04 -2.66 -2.8 0.01 -0.07 -0.55 -0.17

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.