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Heatmap: Cluster_72 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.75 -2.14 -1.59 -1.85 -2.04 -1.9 0.17 0.73 1.63 0.65 0.45 -0.94 0.61 -0.61 -0.27 1.01
-0.18 0.86 -0.01 0.25 -0.26 -0.08 0.55 -0.26 0.17 0.2 0.46 0.37 -0.75 -1.36 -2.09 -0.18
- - - - - - - - - - - - 1.27 -0.57 0.92 3.46
0.65 0.98 -1.92 -2.01 -1.15 -0.98 -1.21 -0.2 - - - - 1.68 0.71 -0.12 1.97
0.25 -0.2 -0.38 0.26 0.58 0.18 -0.32 -1.33 -0.03 -1.06 0.74 -0.9 0.58 -0.38 -0.92 0.76
0.01 -0.74 -0.22 0.07 -1.02 -0.79 0.66 0.31 0.56 0.41 0.06 -0.92 0.2 -0.52 -1.03 0.92
0.34 -0.95 -0.17 0.37 -0.31 0.16 -0.53 -0.48 0.1 -0.27 -0.2 -1.03 0.9 -0.12 -1.2 1.15
-4.29 2.09 -2.51 -2.15 -2.26 -3.45 -0.86 0.85 2.33 1.48 -2.01 -3.39 -2.77 -3.64 -4.18 -2.24
1.37 0.38 -2.43 -3.8 -2.36 -1.26 0.45 1.27 -0.36 -1.29 -0.0 -1.66 0.57 -0.11 -0.93 1.01
-3.43 -3.76 1.52 1.54 1.53 1.71 -0.88 -1.13 -1.83 -1.17 0.13 -0.16 -4.25 -5.19 -5.18 -3.76
-0.59 -1.5 -2.7 -1.27 -1.75 -2.24 1.04 -0.49 0.14 -0.47 0.26 -0.91 1.12 0.42 -0.67 1.78
-0.72 -1.99 -0.72 -0.94 -0.91 -1.1 1.22 0.13 -0.33 -0.29 1.05 0.11 0.5 -0.03 -1.0 0.96
0.63 0.05 -1.47 -1.29 -1.0 -0.83 0.6 0.48 -2.36 -2.29 -0.26 -0.87 0.86 0.63 -0.68 1.54
-0.7 0.59 1.0 1.11 0.64 0.18 0.95 -0.3 -0.02 -0.61 -0.05 -1.2 -1.67 -1.94 -2.95 -0.89
-2.92 -2.56 -3.64 -3.84 -3.05 -3.83 0.2 -0.6 1.78 1.01 0.78 -0.57 0.91 -0.22 -0.97 1.3
- - - - - - 1.56 0.72 - - - - 1.97 0.99 -0.15 2.2
1.42 0.74 -0.99 -1.87 -0.78 -1.05 -0.79 -1.08 -0.96 -1.95 0.01 -0.95 0.95 -0.07 -0.76 1.58
0.24 -0.88 -1.44 -0.78 -0.45 -0.32 0.59 1.24 1.22 0.77 -0.55 -1.44 -0.81 -1.6 -0.57 0.33
-0.86 3.2 -2.63 -3.76 -2.66 -2.67 -1.25 -1.28 -6.92 - -2.24 -3.35 0.37 -0.02 -0.69 0.76
-2.49 1.25 0.81 0.78 0.32 -0.85 -0.13 0.76 -1.83 -0.58 0.5 1.22 -2.14 -2.87 -3.33 -1.35
-0.43 -0.48 -0.85 -0.4 -0.94 -0.52 0.25 0.52 1.41 0.6 0.23 -0.42 0.01 -0.8 -1.08 0.32
-5.53 -0.57 -1.18 -0.97 -1.17 -1.18 0.54 -0.77 0.98 0.11 0.29 -0.54 0.63 -0.05 0.14 1.51
-1.15 -0.64 -1.18 -0.06 -5.63 -7.52 0.42 -0.13 1.54 0.51 0.15 -1.15 0.65 -0.27 -1.29 1.34
- - -5.49 -8.0 - - 0.59 0.16 1.18 0.31 0.82 0.17 0.68 0.11 -0.13 1.75
-0.39 -1.23 -2.08 -1.78 -1.4 -0.73 -0.14 -0.57 1.19 1.67 0.66 0.15 0.02 -0.3 -1.1 0.35
-0.44 -1.34 -1.01 -0.75 -0.73 -0.08 -0.17 0.09 1.05 0.07 -0.01 -1.39 0.89 0.08 -0.73 1.18
0.43 -1.19 -2.06 -2.3 -1.55 -1.51 -1.03 -0.62 -0.97 0.49 -0.86 -1.49 1.37 0.29 0.18 2.06
1.09 1.18 -1.97 -1.51 -2.68 -2.68 -0.07 -0.73 1.08 1.35 0.2 0.13 -0.85 -1.12 -1.64 -0.16
- - -0.57 -0.24 - - 1.1 1.37 - - - - 1.41 0.73 0.16 2.12
0.41 -0.05 -4.19 -7.76 1.73 0.6 0.03 -0.8 0.38 -0.52 -0.47 -0.98 0.15 -0.37 -0.14 0.27
- - 1.48 1.78 2.08 0.93 -1.98 -7.65 - -5.53 -0.14 1.06 -3.32 -3.47 -5.1 -2.71
-0.59 -1.01 -3.94 -5.71 -2.73 -2.61 -0.51 -0.06 -0.39 -1.29 -0.8 -2.64 1.84 0.93 -0.47 2.22
-8.87 - -1.97 -1.28 -1.32 -3.23 1.06 -0.13 1.76 0.57 0.56 -0.2 0.37 0.11 -0.96 0.78
-1.67 -1.02 -5.05 - -2.26 -4.02 1.07 -0.48 0.65 0.64 0.63 -0.35 0.97 0.15 -0.3 1.44
0.86 0.59 -1.62 -2.19 -1.27 -0.76 0.06 -0.11 -0.64 -0.67 -0.01 -0.13 0.63 0.45 -0.13 1.1
-1.19 -1.33 0.68 0.65 0.36 0.34 0.91 -1.05 -0.29 0.1 0.61 0.32 -0.44 -1.04 -1.42 -0.3
-1.71 -1.33 0.58 1.11 0.41 -0.05 1.2 -0.18 -0.16 0.08 0.45 0.13 -0.98 -1.23 -1.82 -0.88
-0.01 -1.75 -0.31 0.02 -0.12 0.09 0.02 -0.54 -0.64 0.02 0.28 -0.38 0.62 0.13 -0.19 1.04
-3.43 -4.42 0.04 0.0 0.67 0.84 -0.58 -0.26 1.65 0.7 -0.04 -1.16 -0.02 -1.59 -2.01 0.26
-0.91 -0.75 -1.16 -0.56 -0.77 -1.41 1.24 0.66 0.42 -0.49 -0.54 -1.53 0.77 0.25 0.11 0.83
0.2 2.05 -1.29 -1.08 -0.06 -1.24 1.0 -0.72 -1.47 -0.89 -0.19 0.18 -0.41 -1.0 -1.25 0.3
0.1 0.77 -1.36 -1.56 -0.97 -1.54 0.36 0.56 0.9 1.46 -0.57 -0.27 -0.45 -1.18 -1.31 0.22
-0.15 -0.48 -0.92 -0.35 -0.54 -0.37 0.26 -0.83 0.29 -0.75 -0.86 -2.06 1.22 0.34 -0.44 1.54
-0.8 -6.34 0.15 0.53 0.68 0.85 0.82 -0.12 - - - - 0.94 0.11 -0.74 1.66
-3.08 -1.49 1.56 2.29 1.46 2.03 -3.88 -5.84 -7.38 -6.47 -2.3 -2.41 -3.39 -3.75 -4.59 -2.98
0.82 1.14 -0.77 -1.14 -0.51 -0.53 -0.02 -0.95 -0.27 -0.23 0.03 -0.02 0.21 -0.16 0.04 0.41
-0.09 -0.66 -1.36 -2.17 -0.5 -0.95 -0.17 0.53 -0.32 0.42 0.72 0.29 0.64 0.07 -0.75 1.04
-0.3 -0.15 -0.06 0.31 0.59 -0.23 0.79 -0.36 -0.13 -0.15 0.68 -0.09 -0.15 -0.96 -1.32 0.06
1.19 0.27 -1.21 -1.09 -1.44 -1.43 0.26 0.17 0.15 0.71 0.35 -0.02 0.02 -0.41 -0.92 0.34
-0.03 -0.87 -2.3 -2.57 -1.53 -1.05 0.09 0.19 -0.76 -0.62 -0.77 -1.02 1.3 0.95 0.63 1.49
0.41 -0.38 -0.31 -0.29 -0.64 -0.61 0.32 -0.19 0.38 0.52 0.23 -0.31 0.2 -0.41 -0.75 0.72
-0.22 - -5.11 -7.36 0.25 0.07 0.19 0.23 1.01 0.3 -1.07 -2.27 1.26 0.22 -0.24 1.15
1.06 -0.05 -2.74 -3.3 -2.27 -1.92 -0.47 1.05 0.57 0.45 -0.83 -1.83 0.84 0.31 -0.91 1.12
-0.31 -0.27 -1.65 -1.41 -1.32 -1.34 0.92 -0.14 -0.11 0.51 0.44 0.31 0.44 0.14 -0.08 0.78
-0.45 -0.46 -0.28 0.21 0.17 -0.24 -0.28 -1.15 -0.12 -0.78 -0.2 -1.68 1.04 -0.02 -0.16 1.43
0.16 -1.19 -1.03 -0.84 -0.83 -0.37 0.37 -0.22 0.37 0.55 0.85 0.17 0.29 -0.11 -0.46 0.44
0.1 -0.15 -2.27 -2.16 -0.87 -0.94 0.67 -0.05 0.21 -1.19 0.58 -1.18 1.04 0.43 -1.2 1.38
-0.12 -2.11 -0.43 -0.02 0.32 0.83 0.54 -0.53 -1.03 -1.53 -0.11 -0.77 0.47 0.52 -0.13 0.89
0.51 -0.55 0.78 0.71 0.2 -0.42 0.66 0.17 -0.77 -0.61 -0.7 -0.39 -0.15 -0.43 -1.9 0.49
- 0.21 -2.22 -1.67 -1.64 -2.19 1.37 0.45 0.08 -0.88 0.13 -1.09 1.02 0.28 -0.32 1.39

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.