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Heatmap: Cluster_81 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-3.95 -2.71 0.48 2.48 -0.39 0.87 1.62 -2.19 - - - 0.28 - - 0.78 -
-0.44 - 1.81 -0.65 1.66 1.3 -1.16 -1.65 -2.49 -1.08 0.28 0.97 - -2.51 -0.44 -
3.43 -4.8 -2.7 -0.37 -2.35 -1.24 -2.05 -2.51 -1.27 -1.5 -0.31 -2.15 -1.87 -1.89 -0.71 -1.91
- - - -0.55 - - -1.56 -2.09 -0.32 - - - - 0.94 3.59 -
- - - - - - - - - - - - - - - -
-0.18 - 1.81 -0.48 1.82 -0.84 - 2.4 -0.07 -2.47 - - -2.25 - - -2.37
- - 0.8 1.67 2.03 1.9 -2.98 -4.72 -2.15 -3.32 -0.02 0.63 -5.2 -2.84 -4.23 -
-0.42 0.95 -0.59 -0.17 -0.7 1.26 1.91 0.32 -1.94 -1.34 -0.23 -0.08 -2.1 -1.14 -1.12 -2.71
1.65 - - - - 1.57 - - - - 3.31 - - - - -
-6.02 -5.65 1.82 2.29 1.81 1.7 -3.24 -3.99 -7.11 -4.59 -2.88 -1.81 -3.96 -4.69 -4.79 -4.89
1.36 1.59 -5.55 -4.48 -3.84 -2.78 0.32 -1.05 0.78 0.61 1.45 1.25 - -4.0 - -
- - -2.97 0.09 2.41 3.19 -2.88 -6.95 - -4.06 -3.13 -4.05 - -8.26 - -
- - - - - - -0.34 0.9 - - - - - - 3.74 -
- - - - - - - - - - - - - 4.0 - -
- - 1.25 - -1.21 1.81 - - 0.25 0.31 1.34 2.24 - - - -
2.18 -2.53 0.95 1.81 0.72 0.44 -3.53 -5.54 - - -2.15 0.33 - -2.05 0.02 -
- - 2.6 2.35 - - - 0.34 - - - - - 1.83 - -
-2.5 - -3.54 -3.22 -2.09 -0.88 -1.75 3.79 - - -3.89 -2.41 -1.63 - - -2.75
-4.62 1.71 -4.44 -3.41 -4.5 -3.02 -4.3 1.38 2.79 1.27 -3.98 -2.37 - -3.3 - -
0.5 - - - - - - - - - - - 2.34 3.25 - -
- - - - - - -0.19 1.14 - - -0.85 2.51 - 2.1 - 1.26
-2.9 -2.97 1.74 0.09 1.75 1.07 -0.23 -1.83 -5.45 - 0.83 1.21 -4.11 -4.2 -1.13 -4.23
-6.27 -1.28 -0.25 -1.5 -2.3 0.63 -0.11 0.17 -0.31 0.92 1.99 1.75 - -1.8 -2.54 -3.64
-2.94 0.22 -0.48 -0.85 -2.2 -2.09 0.68 0.56 -0.24 0.87 1.37 0.75 -1.74 0.07 0.55 -2.87
- - - - - - - - - - - - -0.04 2.45 3.26 -
- - - - - - - -0.97 0.76 -0.15 - - 0.53 0.91 3.17 -0.81
-2.61 2.19 - - - - - -1.81 1.22 -0.04 - - - 1.1 2.17 0.07
- - - - - 2.18 - - - - 2.89 - - 2.02 - -
-4.67 -10.01 1.95 1.68 1.07 2.32 -2.79 -4.08 -4.37 -3.27 -0.33 -0.67 -9.15 -6.79 -8.18 -
-7.03 - 2.37 2.26 1.15 0.76 -3.23 -2.96 -0.82 0.19 -5.19 -3.12 - -6.03 - -
- - 2.5 - - - 0.24 3.19 - - - - - - - -
- - - - - - -4.33 -1.01 -1.0 -0.29 - -4.59 0.48 1.34 3.04 0.95
-4.6 - -0.15 -0.08 0.37 1.59 -3.89 -4.9 -2.14 -2.61 1.88 2.5 - - - -
- - 2.98 3.0 -5.14 -5.64 -5.57 -8.05 -4.72 -6.39 - -8.05 - - - -
- - - - - - - 1.6 - - -0.66 0.82 1.53 - 2.94 -
-1.31 1.0 1.0 -0.47 2.32 2.02 -3.48 - - - - -1.24 - -1.99 0.08 -
-1.61 - 0.21 1.87 -0.66 - -0.46 -2.45 - - - - 1.12 2.84 - -
-0.26 -0.01 -1.08 0.53 0.25 -0.6 -1.1 -2.28 1.53 -2.26 -0.23 -2.33 1.2 0.63 0.59 -2.1
- - - - - - - - - - - - - 1.62 3.69 -
-0.76 -5.29 1.16 1.21 1.74 1.4 -0.19 -1.49 -2.19 -1.02 0.45 0.36 -3.13 -4.81 -4.33 -4.1
- - - - - - - - - - - - - - - -
- -4.87 -3.05 -2.23 3.58 0.55 - -5.42 -4.81 - -4.72 -2.01 - -2.7 0.76 -
- - 1.68 2.11 -1.02 2.71 -0.96 -4.22 -4.18 - - - - -2.65 -0.85 -2.95
1.38 -4.57 0.95 1.38 1.31 1.51 1.05 -0.34 - - -2.66 -1.28 -6.12 -5.63 -5.14 -
3.56 1.52 -6.31 -7.3 -4.08 -4.21 -2.17 -3.29 - - -1.71 -2.16 -4.13 -2.68 -2.74 -5.84
- - 0.87 0.95 1.74 3.06 - - - - - - - -0.89 - -
- - - - - 1.15 - - - - - - - 1.41 3.48 -
- 3.11 1.61 - 0.73 - - - - - - - - - - 1.39
- - - - - - - - - - - - - 4.0 - -
-2.25 - 1.03 1.26 1.77 0.76 -0.25 0.46 1.4 -1.46 -1.65 -1.34 -1.99 -4.09 - -
-10.47 -6.13 0.54 0.13 -0.03 1.01 2.08 -1.66 0.59 0.81 0.49 0.27 -7.78 -8.87 -6.8 -
- - - - - - 2.04 1.54 -0.49 1.52 -0.35 1.96 - -0.43 - -
-2.53 -4.08 -5.58 - -5.44 - -1.59 1.81 0.47 3.38 -3.34 - - - - -
-0.39 -0.96 - - - - - -2.32 2.76 2.66 -1.57 -0.69 - -1.22 - -
- -0.84 - - - - - - - - - - 0.63 1.34 3.41 -0.49
- 3.63 - - - -1.72 - -5.39 - -1.03 - - -0.79 0.12 0.18 -
- -1.33 - - - - 0.89 - - - - - - 1.4 3.47 -
- - - - - - - - - - - - - 4.0 - -
- - 2.39 1.47 2.26 0.79 -1.56 - - - -3.38 -0.4 - -4.24 -2.17 -
-1.07 - 2.47 1.43 1.23 -0.02 0.39 -4.41 - - -3.4 -1.92 -1.16 0.2 -1.18 -2.28
- - 1.4 1.74 -0.63 1.2 - -0.33 0.39 1.67 -0.1 -0.21 - - - -
- - 0.48 0.66 1.0 1.86 2.3 -3.89 -7.23 - -0.18 0.49 -5.88 - -3.91 -5.01
- - - - - - - 4.0 - - - - - - - -
- - 1.91 0.66 0.87 2.29 0.39 -3.92 - - 0.42 0.31 - - - -
- - - - - - - - - - - - - - - -
2.42 - 2.36 - 2.47 - - - - - - - - - - -
- 2.78 - - 0.66 - - - - - - 1.09 2.44 - - -
-5.93 - 1.18 2.03 0.95 1.97 -2.06 -7.76 -1.91 -0.63 -0.4 0.58 -3.18 -2.69 - -3.3
- - - - - - 2.99 - - - 1.33 - - 2.48 - -
- -1.1 - - - - - - - - - - 2.42 - 2.4 2.3
- 1.57 1.89 - 1.6 - - -0.79 0.5 - 0.59 1.48 - - - -
- - - - - - -1.32 -3.35 -0.01 - 1.09 0.98 1.26 0.16 2.23 1.14
4.0 - - - - - - - - - - - - - - -
- - - - - - 0.11 1.58 - - - - - 2.59 - 2.56
- -1.54 -2.04 - - - -2.62 -1.64 - - - - - 1.78 3.41 -0.25
- -2.89 2.6 3.28 - -5.66 - -4.83 -5.04 - - - - - - -
- - 0.52 0.17 1.77 2.31 2.19 - - - -3.67 -1.19 - - - -
- - - - - - - - - - - - 2.73 3.22 - -
- - 2.55 1.01 1.59 2.13 -5.4 - - - -2.45 -1.82 - -1.91 - -
- - - - - - - - - - - - - - - -
- - 0.66 - - 2.21 - 2.08 - - - - - 2.47 - -
- - 0.16 1.49 -0.3 -0.46 -2.1 -0.62 - - - - 0.48 - 3.04 -
-1.68 -0.75 -1.57 -0.24 -2.74 -2.61 2.18 -1.02 -0.42 0.47 -0.18 -2.6 0.95 -0.54 1.03 -0.43
- - 1.79 1.81 1.09 2.74 -3.04 -7.67 - - -3.21 - - - - -
-8.39 -7.75 -2.89 -4.07 1.23 -1.45 0.33 -1.04 0.22 2.44 1.03 1.43 - - - -9.51
0.14 - - - 0.07 -1.1 -1.73 -2.13 - - 0.61 2.09 - - 2.83 -
-2.67 3.57 - - - - - - - - - - - 2.0 - -
- -1.11 -1.87 - -0.77 - 2.72 -0.7 - - -1.14 0.33 1.02 -0.08 - 1.48
-6.41 -4.93 -0.69 -0.8 0.88 1.33 3.1 -2.77 - - -2.06 -0.22 -3.73 -1.2 - -3.86
- - 1.63 -0.77 1.14 0.6 - - - - 2.37 1.2 - - 0.19 -
- 4.0 - - - - -9.28 -7.58 - - - - - -7.8 - -
- - - - - - - - 3.4 2.44 - - - - - -
- - 4.0 - - - - - - - - - - - - -
-8.16 - - -10.43 - - -7.64 -2.51 -2.32 0.87 3.49 1.36 -9.85 - -7.87 -
4.0 - - - - - - - - - - - - - - -
- - -0.32 1.82 -1.19 -1.36 - - -0.75 - - - 0.6 0.5 2.57 0.47
2.29 0.4 -2.46 -2.13 -0.01 0.42 -0.75 -0.13 1.29 0.8 -3.43 -3.16 -2.5 -1.79 -1.36 -1.72
- -0.23 2.68 0.69 2.83 - - - - - - - - - - -
- - -5.4 -5.75 -2.87 -4.04 -1.02 1.63 2.58 2.23 0.06 -1.23 -6.48 -6.56 -5.5 -
4.0 - - - - - - - - - - - - - - -
- - -0.07 -1.48 -0.68 0.38 -0.16 - -2.81 - - -2.82 - 1.51 3.07 -1.61
- 0.34 -0.08 1.58 -0.95 -1.11 2.34 -1.74 - - 1.92 -0.51 - - - -
- - - - - 1.05 - - 1.66 1.72 - - - 2.9 - -
-5.51 3.54 -6.3 -3.16 -4.58 -3.52 - -1.46 1.32 0.24 -4.63 - - - - -
-5.61 -5.86 -1.26 -0.84 -2.47 -0.39 -0.07 0.86 1.62 1.61 1.33 1.37 - - -4.71 -
- - 2.27 2.35 -0.29 -0.1 -4.99 -3.81 0.67 0.73 -2.63 -0.28 - - - -
2.31 1.92 -1.13 -0.85 -0.85 -1.17 -0.14 1.55 -2.85 -0.25 -2.53 -2.49 -5.08 -5.59 - -4.62
- - - - - 2.65 - - - - - 3.28 - - - -
-3.11 1.94 -2.32 -0.41 -1.19 0.96 - -0.39 - - -1.66 - 0.59 0.82 1.57 0.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.