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Heatmap: Cluster_112 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.5 -1.24 -1.65 -1.31 -1.17 -1.36 0.96 -0.08 0.08 0.13 0.65 1.0 0.43 0.22 -0.66 0.64
-1.7 3.24 -3.78 -3.89 -3.22 -1.9 -2.14 -1.23 -9.14 -10.08 -6.46 -3.62 0.25 0.72 0.01 0.19
-1.39 -3.2 -5.07 -4.2 -5.52 -4.47 -1.41 -0.58 - - -5.57 -4.51 2.25 1.82 0.92 2.03
-3.42 -3.66 1.46 1.51 0.11 1.92 0.88 -0.53 -2.52 -2.52 0.24 0.02 -3.51 -6.93 - -2.37
-6.07 -4.24 0.34 0.71 0.69 0.38 -0.38 -0.44 0.24 -0.88 -0.27 -1.5 0.83 0.06 -0.19 1.01
-0.38 -1.64 -0.07 0.17 0.11 0.23 0.01 0.99 -0.0 0.03 -0.43 -0.95 0.15 0.23 -0.32 0.28
-4.74 - -0.96 -0.96 -0.88 -0.76 0.62 -0.2 1.14 0.37 0.19 -1.15 0.99 0.25 -0.84 1.36
-4.72 -3.99 -5.76 -7.65 - -6.99 0.44 0.26 -0.89 -1.69 -0.6 -1.74 1.83 1.33 0.84 1.87
1.46 -1.09 -1.77 -0.08 -1.22 -0.54 1.15 -0.37 -1.14 -1.17 0.31 -1.04 0.88 0.06 -2.06 0.75
-1.15 -1.26 -2.12 -1.44 -1.13 -0.42 -0.64 -0.76 -0.21 0.36 0.76 0.24 1.11 0.8 0.11 1.07
-1.06 -0.19 -0.95 -0.51 -0.72 -0.84 -2.19 -0.92 1.17 1.96 0.97 -0.79 0.04 -0.72 -1.68 -0.17
-1.92 1.24 -0.68 -0.33 0.66 1.33 1.54 0.84 -5.1 -6.26 -0.44 0.19 -1.21 -1.59 -5.59 -1.17
-1.36 0.48 -2.44 -1.02 -1.88 -1.88 -1.03 1.08 1.75 1.18 -0.65 -1.79 0.3 -0.21 -1.49 0.49
-5.14 -1.99 -6.66 -6.11 -6.27 -6.44 -6.27 0.63 2.56 2.97 -4.83 -5.14 -3.6 -3.68 -4.24 -3.15
-1.08 -0.56 -1.48 -0.23 -1.11 -0.22 0.71 -0.13 0.44 1.41 0.22 0.41 -0.01 -0.47 -1.04 0.09
-4.56 -0.88 -1.14 -0.51 0.08 0.95 0.33 0.43 -0.15 -0.24 1.19 1.04 -0.36 -1.1 -1.21 -0.14
0.8 -0.29 -2.8 -2.29 -1.85 -0.77 0.69 0.05 -0.14 -0.57 0.05 -0.86 0.9 0.7 0.13 0.87
-0.21 -0.17 0.45 0.62 -0.03 0.16 0.17 -0.3 -0.03 -0.34 0.25 -0.1 0.0 -0.22 -0.96 0.05
-0.03 -0.97 -2.52 -2.59 -1.76 -1.1 0.71 0.43 0.92 0.59 0.43 -0.63 0.65 -0.35 -0.59 1.01
-0.39 -0.25 -0.66 -0.98 -0.74 -0.7 0.64 0.29 -1.6 -1.6 -0.67 -0.85 1.18 0.76 0.29 1.17
0.17 -0.08 -0.82 -1.0 -0.81 -0.84 0.88 0.44 0.16 -0.84 -0.42 -1.95 0.84 0.38 -0.94 1.17
-0.17 -0.82 -0.63 0.04 0.61 0.24 1.46 -1.13 -0.58 -0.72 -0.5 -0.28 0.52 -0.28 -1.24 0.55
-0.73 -5.3 -2.89 -4.36 -4.57 -4.72 -0.44 -0.7 - - - -3.53 1.89 1.95 0.77 2.14
-1.31 -0.16 -2.62 -2.09 -1.94 -1.58 -1.51 1.68 1.79 2.44 -2.76 -2.78 -1.91 -2.19 -2.38 -1.7
-0.94 2.28 -2.19 -2.76 -1.04 0.1 1.18 0.01 0.75 -0.77 0.13 -0.5 -1.2 -1.92 -2.91 -0.97
0.28 -0.86 -4.57 -3.37 -2.7 -2.61 -2.0 -0.51 0.22 0.61 -0.54 -1.43 1.04 1.23 1.05 1.37
-0.02 -1.53 - - -7.36 - - -4.02 -6.92 -5.86 - - 2.28 1.79 0.92 2.12
-0.03 0.35 -0.91 -0.12 -0.04 0.49 0.44 -1.28 -0.02 -0.34 -0.27 0.37 0.57 -0.18 -1.28 0.56
0.82 0.11 -1.72 -1.69 -1.38 -1.05 0.8 -0.02 1.01 0.48 0.53 -0.59 0.08 -0.6 -0.89 0.21
2.06 -0.31 -4.44 -4.5 -4.09 -3.36 -3.65 -3.81 -3.16 -1.74 -4.34 -5.07 1.57 1.11 0.79 1.71
0.53 -0.11 -6.24 - -0.54 -0.55 0.62 -0.63 -0.37 -1.45 -1.03 -1.52 1.16 0.61 0.4 1.58
1.0 -1.03 -1.7 -1.91 -1.57 -1.37 -0.18 -0.6 -2.21 -1.54 0.07 -0.43 1.49 0.99 -0.05 1.36
-0.73 -4.98 - -7.51 -4.91 - -1.95 0.6 -4.94 -5.62 -3.84 -3.95 2.14 1.54 -0.21 2.38
-9.49 - -5.12 -4.46 -4.18 -3.57 -2.85 -0.65 -1.11 -2.05 -3.18 -4.68 2.23 1.52 1.03 2.19
0.89 0.55 -4.07 -3.46 -3.94 -2.38 -0.88 1.44 1.92 1.64 -1.47 -2.98 -0.75 -1.85 -2.96 -0.62
-0.98 -2.24 -0.74 -0.75 0.21 0.39 1.73 -0.8 -2.96 -3.29 0.98 0.26 0.55 -0.25 -1.09 0.63
1.55 -0.8 -4.46 -4.71 -2.41 -1.7 0.72 0.32 0.73 0.76 -0.04 -1.09 0.21 0.06 -1.93 0.83
-4.0 -1.83 - - -4.16 -5.31 1.62 0.33 -3.68 -2.7 -2.11 -2.43 1.83 0.9 0.19 2.01
0.65 -1.64 -2.15 -2.39 -1.33 -0.69 0.51 -0.37 -1.91 -1.12 -0.22 -1.08 1.38 1.02 0.23 1.39
0.61 0.15 -1.44 -1.45 -0.43 -1.47 -1.88 0.63 0.9 0.18 -0.83 -1.4 0.92 0.79 -0.4 0.48
0.69 0.11 -0.47 -0.11 -0.21 -0.1 0.32 -0.19 0.16 0.03 0.09 -0.65 0.01 0.07 -0.46 0.17
-1.56 -2.59 -0.37 -0.32 -0.4 0.64 1.4 -1.58 -1.87 -0.81 1.99 1.43 -1.37 -1.96 -3.24 -1.47
0.41 1.72 -0.2 -0.11 -0.43 -0.25 -0.39 0.1 -0.96 -1.58 -2.23 -1.44 0.55 0.18 -0.62 0.59
-0.31 -0.69 -6.5 - -5.65 -6.2 1.91 1.13 -0.02 -0.76 -0.97 -1.47 0.88 0.47 -0.91 1.25
-0.49 -0.78 0.52 0.51 0.26 0.52 -0.03 -1.19 0.37 1.01 -0.21 -0.18 -0.08 -0.83 -2.25 0.05
3.04 -4.83 - - -8.51 -8.68 -10.31 -5.93 -3.18 -1.98 -1.62 -2.45 1.12 0.5 -0.39 1.31
-2.66 -2.97 1.0 1.54 -1.35 -0.98 0.47 0.29 - - - - 1.22 0.55 -0.49 1.48
-1.18 -0.13 -1.4 -1.4 -1.23 -1.9 0.39 -0.24 2.05 1.92 -0.19 -0.24 -1.09 -1.87 -3.7 -0.85
1.16 -0.24 -1.89 -1.6 -1.09 -1.01 -0.19 -1.09 -0.57 -0.71 -0.66 -0.53 1.0 0.89 0.38 1.16
-1.31 -1.3 1.93 1.24 0.46 -0.01 1.05 -0.31 -1.04 -1.02 -1.15 -1.44 -0.77 -0.95 -2.55 -0.53
-1.56 -0.72 -4.96 -5.73 -4.49 -3.07 -1.15 -1.22 1.03 -1.09 0.85 0.16 1.54 0.72 -0.13 1.61
0.2 -4.35 -2.12 -2.12 -0.47 -0.39 -0.79 -0.52 -1.11 -2.1 -0.49 -1.2 1.51 1.17 0.54 1.67
-3.25 -2.85 -0.45 0.48 -0.86 0.46 0.53 0.23 1.56 1.1 0.74 0.53 -1.85 -2.44 -2.92 -1.87

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.