Heatmap: Cluster_132 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.11 - -1.07 1.26 0.64 - - 1.36 -0.49 - 1.19 0.5 - - 1.82 -
-0.12 -3.96 0.14 -0.05 0.83 1.34 0.59 -7.04 - -0.74 2.1 1.14 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 4.0 - -
- - 4.0 - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- - 0.7 2.04 -1.17 -1.33 -1.97 1.47 0.87 1.66 - - - - - 0.49
-1.06 0.76 - - - - - - 2.01 2.06 2.1 0.41 - - - -
- - 0.0 1.46 1.87 1.2 -0.25 - -0.41 - 1.27 0.8 - - - -0.79
-0.45 -0.27 - -5.75 - - -4.76 3.51 0.65 0.52 - - - - - -
- -4.19 0.9 0.34 1.76 0.87 1.49 1.45 -5.0 -3.02 -0.15 -0.03 - -6.08 - -6.11
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-4.58 -2.98 0.18 1.03 1.57 -0.95 1.18 -6.7 -3.4 -5.35 0.33 2.46 - - - -
0.82 -0.68 1.64 - 1.91 0.29 - -0.17 - - - - - - 2.21 -
- - 0.7 - - 0.66 - -0.95 - 1.33 1.36 2.84 - - - -
-8.3 - 0.72 1.5 1.9 2.02 -1.36 -9.16 - - 0.22 1.06 - - -3.62 -
-8.41 - 0.92 0.09 1.19 -0.0 0.13 -0.5 -4.31 -1.85 1.02 2.48 - - -6.31 -
- -5.31 0.76 1.72 1.98 1.98 1.34 -3.46 -5.74 -5.68 -2.65 -2.43 - - -3.44 -
- - - - - - - - - - - - - - - -
-8.86 -8.18 0.5 1.38 0.14 0.76 -0.83 -2.11 2.69 -0.02 -0.56 -1.9 - - - -
- 4.0 - - - - - - - - - - - - - -
-4.88 - 2.13 2.28 -1.5 2.63 - - -2.94 - - -4.53 - - - -
1.46 3.46 -2.65 -1.0 -1.93 -0.37 -4.32 - - - -2.99 -3.1 - - - -1.86
2.66 3.27 - - - - - - - - - - - - -5.87 -
- - - 2.53 0.31 3.17 - - - - - - - - - -
-1.79 - -2.3 -1.72 0.13 0.02 3.04 -2.75 - - 1.88 -0.09 - - -3.42 -
-1.15 - 2.23 - 2.36 2.19 - - 0.22 - - - - - - -
-6.16 -7.23 -2.0 -1.97 -0.45 0.51 1.29 1.68 0.38 0.64 1.47 0.95 -5.78 -6.88 -3.81 -
1.1 - - - - - - - - - - - - - 3.79 -
- - - - - - - - - - - - - - - -
3.89 -1.7 - - - - - - - - - - - - -0.17 -
- 0.86 -3.02 - -0.31 -3.05 - - 2.84 2.57 - - - - - -
- - - - - - - - 4.0 - - - - - - -
- - - - - - - - - - - - - - - -
- - 0.64 - - - - - - - - - 1.55 - 3.53 -
2.53 3.36 - - - - - - - - - - - - - -
- -1.72 -2.82 -3.64 -1.71 -1.6 -7.35 -6.42 0.93 3.36 0.27 0.55 - - - -
-1.85 0.56 -0.6 0.06 - 0.56 3.3 - - - -0.74 -0.68 - - - -
- -5.65 -1.1 -1.1 0.32 1.24 1.85 -0.58 -2.97 -3.72 1.91 1.67 - - -6.04 -
3.33 2.57 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - 4.0 -
-0.51 2.38 0.35 -1.31 1.48 0.65 - -2.32 -1.05 - - -1.06 - -0.84 1.24 -
-4.98 3.99 - - - -5.25 - - - - - - - - - -
- - - - - - - 3.93 - - - - - - -0.4 -
-12.03 - 2.36 2.07 0.53 1.58 -0.61 -8.35 -7.59 -8.63 -0.5 -0.2 - - - -
- - -1.21 -1.86 2.78 2.86 -2.54 - - - -2.12 -0.39 - - - -
-7.79 - 1.58 2.05 0.92 2.57 -1.39 -2.36 -3.57 -5.32 -2.7 -2.39 - - - -
- - - - - - - 1.43 - - 3.73 - - - - -
- - - - - - - - - - - - - - - -
- 1.39 -1.55 2.68 1.9 -0.01 - -0.29 - - 0.1 - - - - -
- - - - - - - - - - - - - - - -
- 0.38 -1.99 -1.65 -6.68 - -1.43 -3.05 2.35 1.41 1.65 1.44 - - - -
-6.93 -3.51 -1.45 0.2 -6.02 - -1.82 -7.8 0.06 1.62 2.94 1.19 - - - -
-0.33 3.74 - - - - - -4.18 0.87 - - - - - - -
- - - 1.29 - - - 2.32 -0.05 2.71 0.05 - - - - -
- - - - - - - - - - - - - - - -
- - 2.97 1.73 1.67 0.49 -4.86 -11.48 - - -3.86 -2.73 - - - -
- - - - - - 0.25 -1.75 3.1 2.57 - - - - - -
- 1.36 2.65 1.61 -0.92 -1.08 0.6 -3.71 - - -0.37 -0.47 - - - -
- - - - - - - - - - - - - - - -
- - 0.77 0.14 2.65 2.41 0.38 -6.38 - - -3.51 -2.36 - - - -
- - -2.59 - -4.46 - -5.26 0.74 1.66 2.94 0.78 0.62 - - - -
-5.26 3.4 0.78 -0.63 0.95 -0.93 -1.4 -4.05 - - -3.08 -4.77 - - - -
-2.54 - -1.23 -1.63 -2.42 -5.58 - 0.28 1.38 3.46 -3.88 - - - - -
- 3.99 -5.39 - - - -7.64 -4.82 - -4.75 - - - - - -
-5.7 - - - - - -6.61 1.78 2.49 2.74 -2.7 - - -4.12 - -
- - 3.01 1.98 -0.69 0.42 - - - - -1.65 -1.76 - - 0.49 -
- 3.15 0.58 1.86 0.03 -2.48 -3.36 -10.87 - - -3.79 -0.76 - - -5.32 -
0.79 3.84 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.