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Heatmap: Cluster_64 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.07 -0.65 1.8 1.95 1.08 0.37 - - -0.6 1.59 - - - -
-2.51 3.55 - - - - - -7.17 1.58 0.15 - - - - - -
-2.06 - 0.32 0.01 1.15 1.84 0.94 1.14 -1.52 - 0.38 -0.54 -0.24 -1.33 - -
-0.79 0.45 -0.94 0.99 - - - - - - - - - - 3.53 -
- - - - - - - - - - 3.79 1.1 - - - -
-3.76 -1.59 2.03 2.2 1.32 1.54 -2.24 -5.93 -3.7 -4.64 -0.51 -1.12 - - - -
-6.67 -6.43 1.63 1.62 2.03 1.3 -0.43 -8.11 - - -5.78 -6.89 - -6.64 1.29 -5.66
- -0.02 -0.75 0.67 1.23 1.29 1.18 -4.53 -2.33 -2.26 1.82 0.66 - - -2.32 -
- - 1.31 0.1 1.45 1.55 2.54 -5.33 - - -0.71 -1.55 - - - -
- - - 3.73 0.36 - 0.55 - - - - - - - - -
- - -4.3 - - - - - - - - - 3.0 1.68 1.58 0.81
- - - 4.0 - - - - - - - - - - - -
- - - - - - - - - - - - 2.78 1.32 2.73 -
-2.68 0.1 -1.67 0.68 - 1.14 1.96 - -1.04 - 0.64 1.27 - - 1.2 -
3.7 -3.07 - -3.78 -2.98 -1.82 -3.78 -4.76 -2.54 - - - - -0.29 0.36 -
1.05 1.53 -2.25 -1.89 0.9 1.07 1.06 0.47 -0.63 - 0.95 -0.87 - - - -
- - 1.58 1.3 -3.74 -2.24 2.37 -4.78 -5.79 - 1.9 0.4 - - - -
- - - - - - - - - - - - - - - -
- 0.29 - - - - - - 2.83 1.29 2.38 - - - - -
-2.41 -1.17 - - - 0.98 - -4.24 - -0.93 - -1.0 1.92 1.83 2.31 -
-2.81 -6.75 -2.4 -1.24 -1.46 -1.81 1.76 0.73 - - 2.16 2.34 - - - -
-0.48 3.84 - - - - - - - -2.76 -2.73 - - - -0.5 -
- -0.51 -0.82 - 1.62 - - - - - - - - 0.38 3.37 -
1.75 2.29 - 0.54 - - 2.21 - 0.75 - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-2.16 -5.65 0.76 1.97 0.58 2.42 -2.6 -6.88 -6.91 -4.55 0.57 0.57 -4.12 -5.21 - -5.24
- - - 2.15 - - - - - - 2.5 - - 2.56 - -
- 3.9 - - - - - - - - - - -1.53 - -0.55 -
-5.56 -5.33 2.19 2.26 1.55 1.51 -1.77 -3.36 -4.08 - -2.98 -2.09 - - - -
- 3.93 - - - - - - - - - - - - -0.34 -
- - - - - 2.82 3.16 - - - - - - - - -
-6.37 - -1.74 -0.13 -0.31 -3.1 - -4.17 -1.04 -3.5 0.42 3.57 - - - -
3.21 -2.05 -3.74 - - -3.76 -2.82 0.87 0.72 1.09 -3.04 - -2.83 -2.34 - -2.95
- - - - - 2.51 - - - - - - - 3.36 - -
-0.95 3.7 -3.47 - -2.34 -1.92 -1.33 -4.54 -2.89 - - - - - 0.42 -
- 1.89 -1.83 -2.5 -1.12 1.65 2.65 -5.49 - - 0.78 -2.03 - - - -
- - - -3.43 - -2.21 -4.43 3.83 -3.2 -1.88 - - -1.83 - -0.86 -1.96
- - - - - - - - - - - - - - - -
- - - - - 4.0 - - - - - - - - - -
- 0.63 - - - - -1.51 0.64 - - - - - - 3.65 -
- - - 2.83 - - - - - 3.15 - - - - - -
- - - - - - - 3.09 - - - 2.91 - - - -
- - - - - - - - - - - - - - - -
- - 0.7 2.62 - 0.67 - 0.63 - 2.34 - - - - - -
-5.17 -2.17 - - - - -7.05 2.41 2.23 2.52 - - - - - -
- - - - - - - - - - - - - - - -
-4.88 - - -3.74 -3.94 -1.52 1.8 0.86 0.59 0.47 -0.4 0.5 0.84 -0.26 -1.19 1.04
- - - 4.0 - - - - - - - - - - - -
- -2.84 0.8 1.76 -0.2 1.6 -1.06 - -3.85 - 2.52 -0.95 - - - -
-4.93 -1.38 0.44 0.97 1.42 2.09 -4.7 - - -1.03 1.38 0.82 - - -1.14 -
-9.87 - 0.11 -0.94 -0.72 0.12 0.17 -1.33 0.07 -1.33 2.71 1.68 - - - -
-1.58 -3.95 2.04 2.0 0.77 1.9 -0.02 -5.94 - - -1.54 -2.65 - -2.44 - -1.47
- - 1.58 -0.79 2.39 1.55 -1.8 -4.79 - - 1.15 0.78 - - - -
- - - - - - 1.98 1.18 - - - - 2.18 2.08 - 0.06
- - 0.02 -1.76 1.19 - 3.61 -3.77 -3.09 - - - - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- - 2.65 2.04 - 1.67 - - - - - -1.31 - - 1.01 -
- - 0.72 - 0.84 - - -1.96 - - - - 3.62 - - -
-6.62 - 2.33 2.66 1.26 0.82 -1.93 -11.47 - - -4.33 -2.6 - -8.0 - -
-5.04 2.38 0.16 0.01 0.15 1.43 -0.73 0.72 0.43 -3.6 -0.98 -3.67 - -2.42 -1.35 -
- - - - - - - - - - - - - 2.43 - 3.41
-1.01 -1.0 1.62 1.3 1.9 1.99 -1.91 -4.79 -2.56 -5.3 -5.27 - -2.03 -2.54 -0.73 -2.15
1.22 3.55 -1.89 -0.96 -1.77 -1.79 - - -2.27 -2.22 - -2.29 - - - -
- - 0.55 - 2.35 1.17 2.5 -4.32 - - - - - -1.82 0.25 -
- - - - - - - - - - - - - - - -
1.68 - -2.31 -1.98 -2.18 0.66 0.6 2.49 -1.73 - - -0.74 -0.43 0.09 - -0.52
- - 0.38 2.12 1.8 1.48 1.89 - - - - -1.5 - - - -
- - 1.82 2.16 1.59 2.32 - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -3.12 -3.08 -2.46 -2.62 -3.79 -1.96 2.35 3.04 -0.28 -0.07 - - - -
- - - - - - - - - - - - - - 3.45 2.35

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.