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Heatmap: Cluster_202 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.27 -3.34 -1.4 -2.36 -1.34 -0.74 -0.25 -0.15 -1.67 -1.49 -0.08 -0.87 1.58 1.14 1.06 0.96
0.28 -1.39 -0.16 -0.22 -0.05 0.47 0.69 -0.09 -0.13 0.18 0.96 0.12 -0.43 -0.58 -0.8 -0.59
-2.52 -4.09 -1.61 -0.89 -0.77 -0.27 0.32 0.08 0.14 0.05 0.45 -1.37 1.42 0.83 0.52 0.49
0.32 -1.45 -0.83 -0.69 -1.45 -0.41 0.55 -0.41 -1.36 -0.76 0.25 -0.27 1.1 0.69 0.82 0.42
-1.72 1.47 -2.11 -1.54 -2.09 -1.42 -0.5 1.89 0.77 0.86 -0.17 -0.62 -0.57 -0.78 -1.09 -0.87
0.26 -1.81 -1.3 -1.36 -1.19 -0.3 0.23 -0.93 -0.86 0.21 0.51 -0.96 1.04 0.7 0.69 0.87
0.79 -0.89 -0.82 -0.7 -0.44 0.03 0.36 -0.66 -0.44 -0.11 0.98 0.38 0.26 -0.0 -0.38 -0.06
0.18 -1.97 -1.05 -0.89 -0.51 0.12 0.49 -0.62 -0.58 0.15 1.03 -0.21 0.53 0.37 0.07 0.36
-0.94 -1.11 -0.41 -0.08 -0.95 -0.52 0.11 -0.11 0.79 1.02 0.75 0.04 0.42 -0.2 -0.81 -0.22
0.53 -2.4 -0.71 -0.74 -0.17 0.7 -0.08 -1.31 -2.22 -0.35 0.89 -0.38 1.18 0.39 -0.1 0.25
0.6 -1.71 -1.11 -1.75 -0.99 -0.42 0.39 -0.81 -1.19 0.32 0.72 -0.32 0.62 0.72 0.56 0.58
-0.06 -1.89 0.76 1.01 0.68 0.91 -0.07 -0.08 -0.8 -1.48 0.24 0.1 -0.32 -1.09 -0.63 -0.79
0.29 -1.37 -0.82 -1.96 -0.3 0.24 0.14 -1.25 -1.06 -0.28 1.21 -0.16 0.95 0.41 -0.05 0.39
0.23 -4.13 -0.55 -1.1 -0.66 -0.5 -0.51 -0.74 -2.07 -1.96 -0.37 -0.65 1.51 1.09 0.95 1.12
0.07 -2.28 -0.43 -1.24 -0.54 0.03 0.45 -0.95 -1.99 -0.55 0.77 -0.46 1.04 0.85 0.44 0.5
-5.08 -5.86 0.25 0.91 0.57 0.83 0.96 0.21 -5.85 -6.45 - - 1.06 0.75 0.35 0.55
1.05 -3.46 -0.65 -2.55 -1.23 -0.94 -0.06 -0.48 -4.51 -6.25 -1.55 -1.68 1.84 1.33 0.44 1.18
0.84 -1.76 -0.1 -1.42 -0.34 -0.14 0.39 -0.35 -4.08 -2.61 -1.64 -1.48 1.61 0.77 0.36 0.9
-0.66 -1.74 -1.52 -1.22 -1.09 -0.62 0.77 -0.55 -0.3 0.44 0.85 -0.06 0.79 0.47 0.31 0.59
0.58 -1.49 -0.58 -1.21 -0.28 -0.1 0.82 -0.6 -1.01 -0.53 0.8 -0.05 0.53 0.35 0.15 0.19
0.64 -1.08 -0.67 -0.73 -0.26 0.32 0.42 -0.42 -0.36 -0.1 0.88 0.35 0.13 0.06 -0.51 -0.15
0.67 -0.38 -0.35 -0.39 -0.09 -0.09 0.67 0.36 -2.16 -2.43 0.21 -0.06 0.55 0.13 -0.19 0.47
0.79 -0.94 -0.21 -0.6 -0.23 0.12 -0.0 -0.28 -0.21 0.12 0.32 -0.58 0.48 0.12 -0.05 0.21
-0.55 -1.46 0.66 1.22 1.07 1.05 0.03 -0.64 -0.34 -0.18 0.17 -0.68 -0.74 -1.5 -1.36 -1.14
0.7 -3.16 -0.44 -1.73 -0.32 -0.69 -0.18 -0.49 - - -2.91 -2.23 1.64 0.96 1.37 1.14
0.42 -1.85 -0.01 0.17 0.41 0.36 0.71 -0.07 -6.95 -7.47 -0.83 -0.74 0.94 0.2 0.67 0.29
0.63 -1.26 -1.21 -1.77 -0.8 0.09 0.29 -0.63 -0.52 0.11 0.81 -0.21 0.71 0.49 -0.11 0.53
0.78 -0.65 -1.24 -1.54 -1.4 -0.2 0.79 -0.04 -0.66 -0.82 0.76 -0.46 0.76 0.64 -0.02 0.1
0.61 0.63 -1.0 -1.54 -0.92 -0.57 0.04 -0.23 0.33 0.74 0.3 -0.41 0.17 -0.29 -0.02 0.2
0.56 -1.64 -0.61 -1.76 -0.13 0.28 0.62 -0.86 -2.32 -1.09 0.12 -0.4 0.8 0.81 0.63 0.57
0.48 -3.24 -0.26 -1.18 0.0 0.14 -0.43 -0.49 -3.67 -3.67 -1.15 -1.59 1.58 1.01 0.93 0.87
-1.39 -3.36 0.62 1.52 1.65 1.73 -0.61 -0.76 -2.08 -3.43 -1.51 -0.66 -0.8 -1.25 -0.68 -1.03
-1.6 -3.06 -0.13 0.57 -1.46 -0.76 -0.49 1.32 1.9 1.65 -0.72 -1.91 -1.17 -1.83 -2.48 -1.55
0.78 -0.98 -1.25 -2.49 -0.95 -0.52 0.09 -1.09 -1.3 -0.37 0.63 -0.39 0.8 0.68 0.75 0.94
1.59 0.59 -5.59 -7.26 -0.34 -0.06 -0.32 -0.43 -1.3 -1.39 -0.67 -1.14 1.06 0.64 0.44 0.37
-0.71 -1.52 1.24 1.68 0.82 0.44 -0.67 -0.94 -0.38 -0.31 0.02 -0.14 -0.9 -1.64 -1.37 -1.19
-0.09 -1.33 -1.05 -1.8 -0.41 -0.66 0.43 -0.16 -0.97 -0.66 0.26 -0.75 1.16 0.71 0.81 0.76
0.64 -4.91 0.16 -0.67 -0.37 -0.17 0.24 -0.82 -5.34 - -1.07 -1.31 1.65 1.02 0.48 0.83
0.41 -1.59 -1.66 -2.31 -1.47 -1.26 0.03 -0.04 -3.91 -3.85 -0.36 -0.27 1.47 1.19 0.78 1.33
2.18 0.18 0.1 -0.2 0.32 1.08 -0.47 -1.1 -3.54 -4.03 0.28 -0.6 -0.71 -0.92 -1.75 -1.28
-1.11 -0.84 0.81 1.4 1.53 0.94 1.27 -1.92 -0.58 -0.97 -0.51 -0.84 -2.12 -2.55 -3.03 -2.95
0.34 -0.81 -0.44 -0.17 -0.06 0.25 0.37 -0.13 -0.22 -0.2 0.21 -0.39 0.39 0.08 -0.05 0.26
-0.64 -0.34 -0.52 -0.41 -0.55 0.07 0.3 -1.05 -1.03 -0.09 0.58 0.25 0.77 0.43 0.11 0.51
-0.36 -1.08 -1.38 -1.08 -1.04 -1.51 0.25 -0.3 -0.9 -1.62 0.62 0.17 1.4 0.56 0.29 1.13
0.44 -2.11 -0.82 -1.66 -0.51 -0.04 0.28 -0.84 -2.1 -0.72 0.57 -0.72 0.99 0.94 0.7 0.7
0.13 -1.0 -1.39 -1.91 -0.9 -0.67 0.52 -0.42 -0.56 -0.66 0.55 0.07 0.96 0.64 0.57 0.67
-0.42 -2.54 0.22 0.22 1.08 0.91 0.93 0.43 -3.22 -4.06 -0.81 -0.35 0.19 -0.17 0.03 -0.1
-0.22 -1.09 0.22 0.53 0.42 0.73 0.19 -0.31 0.1 0.3 0.4 0.08 -0.48 -0.99 -0.62 -0.81
0.46 -1.71 -0.54 -1.27 -0.22 0.19 0.39 -0.66 -1.73 -0.56 0.46 -0.65 0.81 0.62 0.58 0.59
-0.53 -1.48 -0.56 -1.16 -0.48 -0.18 0.57 -0.16 -0.05 0.06 1.23 0.33 0.27 0.14 0.01 -0.13
0.14 -1.88 -1.39 -1.58 -0.84 -0.05 0.43 -0.64 -0.47 0.27 0.98 -0.28 0.88 0.45 0.17 0.43
-0.0 -4.16 0.07 -0.84 0.23 -0.07 -0.41 -0.84 -3.74 -3.44 -1.14 -1.39 1.43 1.21 0.88 1.03
0.03 -2.86 -0.5 -0.23 -0.39 0.02 0.72 0.16 -0.01 0.47 0.19 -1.49 0.56 0.14 -0.15 0.48
-0.54 -2.18 0.76 0.79 0.86 1.07 -0.26 -0.97 -0.79 -1.01 0.6 0.25 -0.18 -0.96 -0.84 -0.56
0.36 -0.69 0.42 -0.09 0.2 0.72 -0.23 -0.45 -0.45 -0.18 0.86 0.64 -0.43 -0.54 -0.9 -1.04

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.