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Heatmap: Cluster_131 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 1.11 0.64 2.12 2.04 0.54 -1.53 - - -0.24 0.06 - - -2.95 -
- - 0.66 0.85 1.99 1.0 2.6 -2.37 - - -2.47 -3.16 - -5.49 -3.42 -
- - 2.37 - - 0.34 - - - - - - - - 3.26 -
- - 2.98 1.82 0.57 1.47 - - - - - - - - -1.69 -
- -0.72 - - - - - - - - 2.72 2.44 - - 1.76 -
- 3.93 - -3.51 - -2.88 - - - - - - - - -0.97 -
- - 2.41 2.13 0.95 1.56 0.09 -8.04 - - -3.73 -3.25 - -4.57 -2.5 -
3.08 -2.47 - -3.83 - - -7.65 2.84 - - - - - - -3.09 -
- - 0.65 2.01 1.94 1.36 0.99 -4.5 -5.08 - -1.18 0.08 - - -1.18 -
- 3.92 - - - -3.26 - - - - - - - - -0.33 -
- - - - - - - - - - - - - - 4.0 -
-2.37 - - - 0.15 - - - - - - - - - 3.88 -
-7.21 -4.97 -1.61 -0.65 1.69 -0.12 1.54 -1.51 1.85 0.99 0.14 -0.27 - - -3.56 -
2.9 - - - - - - -0.95 - - - - - - 3.0 -
- - 1.33 0.74 1.81 2.73 -0.04 -7.27 - - -2.94 -1.24 - - -2.73 -
1.09 - - - - - - - - - - - - - 3.79 -
- - - - - - - - - - - - - - 4.0 -
-1.14 3.65 - -0.61 - - - - -1.37 - - - - - 0.95 -
- 2.77 - - - - - - - - - - - - 3.2 -
0.62 2.74 - 0.18 - - - - - - - - - - 2.73 -
- - 0.72 -2.12 -0.74 -0.17 - -3.11 1.58 -0.24 0.21 2.63 - - 0.43 -
- 3.62 -1.56 -0.23 - - - - - - - - - - 1.32 -
0.85 0.67 -0.26 0.08 - 1.72 - - 0.35 - - - - - 2.62 -
1.14 - 0.95 - - 0.91 - - - - - 1.51 - - 2.83 -
- 0.38 0.24 -0.36 1.2 -2.19 -2.23 -2.15 -0.58 0.39 2.05 1.5 - - -0.26 -
-3.22 -1.25 - - -3.06 -5.82 - -2.38 1.42 3.16 0.64 0.8 - - -1.89 -
-0.15 - - - -0.76 -0.91 - - 3.1 1.77 - - - - 1.0 -
- - - - - - - - - - - - - - 4.0 -
-1.88 3.88 - - - - - - -2.5 - - - - - -0.19 -
- 3.88 - -2.66 -3.31 -4.03 -4.68 - - - -1.98 -1.24 - - -2.13 -
-1.67 -1.79 0.71 1.23 0.23 3.08 -0.04 -1.43 - - -5.49 -1.5 - - -3.28 -
- 3.88 - -2.43 - - - - - - - - - - 0.12 -
- 2.93 0.81 - -0.38 -0.55 - - - - - - - - 2.37 -
- - -3.0 -2.67 0.45 3.62 - -5.66 -2.43 - - - - - 0.88 -
- - 0.43 1.0 2.16 1.28 2.34 -4.29 -3.55 -4.81 -2.39 -1.88 - -6.63 -4.56 -
-3.13 - -0.53 -3.01 2.38 2.65 -4.01 -1.67 - - - -2.78 - -2.52 1.55 -
-3.42 0.85 2.2 2.1 0.88 0.96 -2.61 -2.89 -3.92 -3.86 -1.07 -1.09 - -4.67 -4.6 -
- 1.19 -0.29 1.04 - 0.67 -0.96 -1.94 - - - 1.27 - - 2.6 -
- - - - - - - - - - - - - - 4.0 -
-2.44 3.93 - - - - - - - - - - - -3.16 -1.09 -
-6.19 - 2.74 2.63 0.42 0.62 -4.05 -9.81 - - -3.77 -4.18 - - -6.27 -
- 3.96 - - - - - - - - - - - - -1.36 -
-8.57 - -3.33 -2.76 -6.08 -5.83 -5.46 3.07 1.24 2.25 -4.32 -3.07 - - -4.9 -6.0
- 1.7 -0.62 -0.5 -3.13 - -1.0 -2.74 2.16 2.1 - -1.78 - - 0.65 -
-4.41 0.44 -1.8 -1.54 -0.94 -0.48 1.77 1.53 -1.46 -3.23 1.66 1.47 - - -4.8 -
- - 1.19 1.11 1.32 1.96 - -3.47 - -0.18 - - - - 2.07 -
- - 1.77 - - - - - - - - - - - 3.65 -
- - - - 1.7 1.55 1.49 0.6 - - - - - - 2.46 -
-2.66 2.12 2.37 1.04 - 0.89 - - - -1.25 - - - - 1.01 -
1.16 3.68 -4.54 -3.52 -1.2 -2.63 - -6.86 - - - -5.99 - - -2.33 -
- - - - -8.03 - -5.37 3.41 0.39 1.98 -6.17 -3.79 - - -6.28 -
-7.19 -5.24 -6.79 -4.14 -2.92 -4.95 -0.75 0.85 1.79 3.16 -0.48 -2.45 - - -5.49 -
- - 1.6 1.67 1.2 2.79 -1.98 -6.42 - - -4.11 -2.75 - - -3.88 -
- - 0.38 0.98 0.77 0.61 2.16 -3.6 - - 0.14 1.68 - - -0.64 -
- - -0.88 -2.96 1.93 0.53 3.14 -5.26 -0.74 -4.51 -1.75 -2.2 - - -4.58 -
- 3.88 - - - - - -3.03 - - - - - - 0.2 -
- - 0.52 -0.85 2.45 -0.96 2.97 -5.22 - - -3.86 -3.86 - - -4.29 -
- -6.88 0.54 1.39 1.09 0.93 2.27 -2.55 -1.46 - 0.19 0.35 - -5.53 -3.46 -
-2.19 2.4 -3.56 - - -2.58 -3.24 -5.27 2.77 1.35 -2.84 - - - -0.69 -
- - - - 2.33 2.94 0.17 0.29 - - - - - - -0.08 -
- - -2.16 -2.15 -3.35 -0.87 - -1.54 2.41 3.08 -1.11 -2.33 - - -2.6 -
- - 0.34 -0.09 1.43 1.43 3.01 -5.0 - - -3.31 -2.27 - - -5.36 -
- - 0.66 0.99 - - - -0.41 - - - - - - 3.55 -
-3.88 -4.9 2.27 0.71 0.69 -2.21 - - -6.81 - 0.51 2.61 - - -4.46 -
- -8.62 -1.66 -4.56 -0.12 -3.47 -5.41 -6.44 -3.32 -7.43 1.89 3.42 - - -4.17 -
- - - - - - - - - - - - - - 4.0 -
-1.91 - - -0.8 2.33 -1.16 -1.8 0.98 - - - 2.02 - - 1.76 -
-5.32 -3.38 -0.87 0.04 -0.57 3.41 -1.52 1.05 -6.31 -6.25 -2.22 -4.32 - - -1.98 -
- - - - - - - - - - - - - - 4.0 -
- - 0.26 0.01 -0.62 -1.36 3.41 -5.0 - - -0.64 - - - 0.55 -
-4.09 3.99 -8.86 -9.53 -8.73 -9.9 - -9.05 - - - - - - -5.97 -8.07
- - -0.95 -1.62 -0.01 0.69 -0.53 1.5 1.83 2.28 - -2.8 - - -1.06 -
-7.76 -0.97 1.99 2.05 1.41 1.49 -0.24 -1.74 -6.15 -8.67 -1.83 -1.24 - - -6.41 -
- - - 2.3 - - -1.03 1.87 0.25 - - - - - 2.52 -
- - - - - - - -1.83 2.2 2.74 - - - - 2.15 -
-4.76 - 1.44 1.58 1.67 2.47 -1.88 - - - -2.83 -0.13 - - -2.41 -
-3.33 - -2.53 -2.2 0.92 2.93 0.5 -1.6 - - 0.14 0.36 - -0.71 0.36 -
- 0.53 - - - - - -2.12 0.14 - - - 1.46 - 2.44 2.34
-1.29 1.24 - - - - - - 2.29 1.34 - - - - 2.54 -
- - - - - 0.9 - - - - - - - - 3.82 -
-2.62 - 0.31 -1.53 0.86 1.91 0.87 1.73 - - - 1.02 - - 0.04 -1.06
- -7.11 -2.05 -3.54 -1.63 -0.54 2.0 -2.55 - - 2.52 2.23 - - -4.68 -
- - -2.87 -4.67 3.97 -4.04 -7.0 - - - - - - - -4.44 -
0.76 2.78 -1.55 - -1.42 0.43 - -2.22 -0.95 -0.89 -0.86 0.04 - - 1.34 -
- - 0.85 1.71 2.93 1.57 - - - - - - - - -1.66 -
-2.51 -2.5 1.41 0.65 1.55 1.71 1.85 -6.25 - - -2.5 0.43 -6.28 - -3.72 -
-2.58 3.48 -2.82 -2.81 -0.61 -1.18 1.2 -2.92 - - -1.57 -1.78 -3.22 -5.32 -3.25 -
- - 0.84 0.98 3.01 1.45 0.3 -7.81 - - -2.23 -5.13 - - -9.67 -
-3.86 -4.98 0.13 1.03 1.82 1.86 -0.54 -7.13 -1.85 -0.91 1.59 0.07 - -8.99 -5.34 -7.02
-2.79 -2.65 0.97 1.62 1.11 1.21 0.79 -3.29 -1.58 -1.02 1.34 -0.11 -7.41 -7.46 -4.86 -6.54
-5.92 - -0.29 -0.36 0.51 -0.49 0.39 -0.04 - - 2.82 1.26 -3.23 - -1.26 -
-3.19 - -0.92 -0.58 -0.93 -2.09 -1.05 -0.56 2.65 1.79 -1.12 1.05 - -2.56 -1.49 -
- - - - - - - - - - - - - - 4.0 -
- - -0.93 - 1.35 0.99 2.06 0.48 - - 1.33 1.28 - - -1.21 -
- - - 1.99 - - - -1.42 - - - - - - 3.54 -
- - - - - - - 1.29 2.63 2.35 - -0.63 - - 0.7 -
- 3.57 - - - - - - - - - - - - 2.06 -
2.22 -0.71 -1.13 - - - - - 2.26 1.09 - - - - 1.75 -
-0.87 - 0.78 1.51 2.92 1.35 -2.54 - - - - -3.3 - - -0.98 -
-2.96 3.8 - - -1.58 -1.42 - -3.05 - - - - - - 0.17 -
- - -0.7 -1.06 1.77 1.81 2.29 -2.34 -4.52 -4.14 0.57 0.2 - -6.27 -2.61 -
- - 0.6 - 1.73 - - - - - - - - - 3.48 -
-3.92 3.42 -4.69 -4.36 - -2.4 -5.36 -5.35 -3.11 -1.73 1.6 0.2 - - -1.8 -
-4.27 -3.43 2.12 2.12 1.52 -0.01 -1.7 -1.93 -1.6 -0.06 -1.83 -1.61 - - -0.6 -2.7
- - 2.18 1.53 2.61 0.21 -0.81 -4.91 - - - -2.28 - - -0.96 -
- 3.96 - - -6.91 - - -7.69 -1.35 - - -6.49 - - -4.16 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.