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Heatmap: Cluster_30 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - 0.11 1.0 2.32 - - - 1.73 2.21 - - - -
-2.14 -7.19 2.06 0.55 1.51 0.04 -0.08 -0.67 -5.03 -1.36 0.87 0.3 -2.11 -2.15 -3.72 -0.58
-1.76 -3.15 1.22 0.81 1.0 1.52 -1.56 -1.57 -4.5 -3.8 -1.1 -0.26 0.25 -0.02 0.75 -0.54
-6.11 -4.59 -3.21 -2.33 -0.49 0.35 - - - - -5.29 - 1.43 1.27 2.95 -0.35
- - 2.82 3.16 - - - - - - - - - - - -
-4.3 - 2.36 1.61 1.42 1.67 -1.91 -3.0 -1.8 -0.94 -1.38 -2.81 - -2.6 - -
-1.41 -0.18 0.37 -1.42 1.11 1.31 -2.37 -4.18 -3.22 -3.97 -3.93 -1.72 -1.68 -1.55 2.63 -0.35
- - - - - - - 3.05 - 2.95 - - - - - -
-1.72 -0.47 1.52 1.39 0.55 1.82 -0.64 -2.71 -2.54 -2.31 0.19 0.02 -2.02 -1.38 -2.46 -1.48
-3.79 0.02 -1.05 -1.76 -0.99 -1.66 -4.31 0.95 1.37 1.65 -5.1 -4.21 -0.32 1.11 0.88 -0.44
0.08 -5.43 1.0 1.45 0.79 2.34 -1.39 -3.45 - -8.13 -0.81 -0.6 -2.53 -1.0 -0.33 -2.04
-4.43 - - - - -3.64 - 3.29 0.88 0.49 -2.93 -1.46 -0.7 0.21 - -0.82
-3.38 -6.57 0.4 0.74 1.72 2.14 -4.51 -5.06 -10.43 -7.04 -3.34 -2.64 -0.53 -0.24 1.18 0.12
-8.16 -4.79 -7.35 -6.28 -6.48 -5.16 -8.61 -12.59 -6.55 -6.3 -6.68 -6.05 2.08 1.77 1.89 2.17
-2.53 -0.97 -0.34 -2.12 0.58 -0.43 -0.95 -1.05 -4.46 - - -4.47 1.52 1.64 1.31 1.33
-1.96 2.77 1.57 -1.45 -0.54 1.78 -4.71 -3.87 - - - -4.35 -1.94 -1.72 -0.38 -
-8.73 -6.18 -5.03 -4.17 -5.13 -5.28 - -10.52 -7.23 -5.59 -6.14 -6.24 1.54 2.42 2.18 1.58
-3.96 -5.86 1.22 1.26 1.26 1.6 -0.69 -1.69 -1.58 -0.57 0.57 0.32 -3.59 -2.52 -1.52 -1.06
-3.28 -3.01 0.77 1.3 0.67 1.39 -1.37 -2.53 0.72 1.53 0.3 -0.03 -5.33 -5.23 -4.84 -5.45
-5.32 -5.37 -0.59 -1.45 0.1 2.49 -5.19 -5.01 -7.9 -6.26 1.06 1.26 -3.29 -4.24 1.62 -1.21
-5.64 -5.18 0.24 -0.5 1.48 2.18 -3.2 -0.11 -4.64 -5.02 0.35 0.54 -2.91 -4.9 1.19 -1.06
-3.48 -0.2 -2.54 -2.58 -3.53 -0.25 -2.22 -1.2 -3.66 -4.6 -5.56 - 1.19 2.32 2.07 0.59
-2.4 -1.16 1.49 1.59 1.47 0.4 -0.95 -2.09 -2.1 -2.14 -1.75 -1.47 -0.64 0.11 -0.21 0.01
- - - - - - - - - - - - - - - -
-10.17 -4.92 - -6.46 -6.92 -7.09 -6.72 -7.08 - - -8.71 -6.81 1.19 2.5 1.98 2.01
-6.19 -6.24 1.39 1.94 0.97 1.45 -0.97 -1.84 -3.44 -2.28 0.92 0.65 -4.62 -4.53 -3.08 -3.85
-3.21 -6.04 1.49 0.96 1.31 1.96 1.23 -3.42 -3.29 -2.73 0.08 -0.27 -5.39 -4.86 -3.94 -5.62
-2.87 -4.77 1.55 1.29 0.64 1.71 -2.5 -2.04 -3.6 -1.49 1.09 0.87 -3.41 -2.52 -1.76 -1.97
-2.29 - 1.08 1.06 0.73 -0.29 2.61 -2.49 - - -1.27 0.61 - -0.13 - -
-8.3 -5.07 0.95 1.09 1.64 2.03 -0.8 -5.3 -1.88 -1.05 0.47 0.48 -3.94 -3.45 -1.23 -
-0.86 -1.95 0.6 0.72 0.58 1.84 -2.03 -2.53 -2.03 -0.34 1.29 1.24 -3.68 -1.87 -2.36 -2.68
-0.06 -1.84 1.34 1.54 1.51 0.9 -2.14 -3.13 -2.6 -1.25 -2.5 -2.57 -1.62 -0.05 -0.03 0.06
-2.41 -4.91 -0.02 -0.66 0.41 1.99 -2.7 -1.52 -3.12 -2.79 0.23 0.99 -0.14 0.16 0.98 -0.06
-2.47 -1.88 0.94 0.74 0.44 0.8 -1.9 -2.56 -1.21 -1.15 0.11 0.08 0.32 -0.07 0.7 0.65
-1.33 -4.08 -1.96 -2.58 -1.59 -0.52 -2.56 -1.18 -4.08 -3.35 -1.35 -0.47 1.39 1.68 1.42 1.89
-2.63 0.2 -0.02 0.24 -0.27 -0.99 -0.23 0.32 0.59 1.31 0.68 0.05 -0.97 -1.16 0.0 -0.99
-4.79 -3.71 -4.57 -5.83 -1.78 -0.7 -2.37 -1.9 -3.59 -4.94 -2.58 -1.95 0.64 2.05 2.31 1.71
-4.61 -4.3 0.81 1.14 0.78 1.85 -1.47 -6.24 -4.05 -1.89 0.98 1.55 -4.18 -3.47 -0.35 -3.31
-3.39 -3.86 1.1 1.59 1.27 2.11 -2.0 -4.21 -3.77 -2.76 0.58 0.63 -4.18 -3.96 -2.91 -3.04
-0.38 - -1.06 -1.3 0.2 0.17 -1.8 -4.43 - - -2.43 -3.86 0.54 1.41 2.13 1.58
-6.79 -7.2 0.85 1.09 0.34 2.75 -4.9 -4.71 -4.86 -1.94 0.74 0.69 -5.94 -4.81 -1.85 -3.84
-2.45 - 0.44 -0.5 2.61 0.31 2.64 -4.49 - - -3.3 - - - - -
-1.38 - -0.09 -0.09 -0.74 0.28 0.51 0.27 -6.42 -6.36 0.54 0.35 0.24 1.34 1.1 -0.56
-3.14 -1.86 1.57 1.13 2.31 1.54 -2.52 -2.35 -4.39 -2.5 -0.89 -0.83 -3.55 -2.97 -0.73 -3.67
- - - - - - - - - - - - - 4.0 - -
- 4.0 - - - - - - - - - - - - - -
0.83 - 2.4 1.74 1.1 - - -1.29 - 1.06 - -0.01 - - - -
-5.87 - -1.15 -0.65 -0.93 -0.01 -3.36 -4.47 -6.3 -4.67 -2.75 -2.23 0.85 1.4 2.83 0.34
-4.98 -5.25 -1.14 -0.84 -0.93 2.29 -4.99 -3.29 -5.31 -1.93 1.57 1.93 -5.31 -1.77 0.85 -2.35
-3.34 -2.64 0.85 0.39 -0.36 0.52 -2.06 -1.05 -0.06 0.22 0.03 -0.36 0.32 0.48 0.73 0.54
-2.4 -3.33 0.62 1.54 1.01 3.03 -4.23 -2.54 - -6.51 -2.9 -1.99 -5.87 -5.18 -1.35 -5.7
-3.69 -2.59 1.31 1.12 1.02 1.5 -2.26 -3.49 -1.09 -1.24 -0.02 0.11 -1.07 -0.78 0.29 -0.48
-1.94 -1.08 0.05 -0.22 0.4 0.62 -1.45 -2.74 -1.13 -0.44 0.68 0.65 0.15 0.33 0.22 1.07
- - - - - - - - - - - - - - - -
- - 1.99 2.57 0.59 1.63 -3.99 -4.52 -5.37 -6.63 -0.07 -1.4 - -6.46 - -
- 4.0 - - - - - - - - - - - - - -
-3.92 -3.73 0.91 0.83 0.99 1.55 -2.54 -4.84 -4.26 -3.18 -2.12 -1.91 -0.77 0.06 1.7 0.66
-3.03 -2.84 1.01 1.13 1.42 1.62 -2.55 -4.11 -1.65 -1.07 -0.97 -0.93 -1.34 -0.73 1.0 -0.44
-3.77 -3.56 0.62 0.68 1.15 1.55 -3.27 -4.66 -0.65 0.11 -1.08 -0.67 -0.86 -0.1 1.23 -0.42
-1.62 -1.8 1.28 1.54 1.34 1.35 -1.44 -2.88 - - - - -0.72 -0.13 1.11 -0.33
-6.38 -5.86 1.34 1.7 0.54 2.11 -3.06 -6.17 -2.12 -1.07 0.33 0.5 -4.22 -1.91 -1.18 -2.66
-1.75 -1.79 0.94 1.2 1.16 1.44 -4.0 -3.01 -2.92 -4.35 -1.72 -2.09 -0.25 1.07 0.76 -0.46
-3.49 -8.58 1.05 1.46 0.8 1.93 -0.48 -3.31 -1.07 -0.51 1.08 0.37 -5.73 -5.02 -3.95 -5.74
-2.48 -0.56 1.11 0.83 1.64 2.15 -0.87 -1.79 -6.93 -4.55 0.3 0.22 -4.03 -2.56 -3.64 -4.41
-1.33 -0.15 -0.5 0.31 0.52 0.48 -1.68 -3.68 -6.22 -5.16 -2.8 -1.06 -0.07 0.52 2.62 -1.68
-1.7 -0.44 1.02 0.99 0.8 1.47 -1.88 -2.92 -1.23 -1.48 0.11 0.15 -0.92 -0.67 0.46 -0.92
-4.74 -3.6 1.62 1.26 1.62 2.36 -4.23 -4.12 -4.43 -2.85 -0.63 -0.57 -3.23 -3.79 -1.92 -2.85
-1.66 -0.34 -0.62 -1.39 -0.36 0.34 -1.44 -2.42 0.39 1.24 1.7 1.32 -1.88 -1.67 -0.09 -1.63
-7.56 -0.38 1.81 2.45 1.3 0.69 -0.73 -5.09 -3.38 -6.13 -2.09 -1.56 -1.68 -2.24 -3.87 -1.97
-0.94 - -0.49 0.85 1.95 2.07 2.01 - - - - - -0.17 - - -
- 2.36 - - - -2.26 - -5.93 - - - - -0.34 2.15 2.22 -0.46
-4.78 -2.92 0.81 0.9 0.28 0.01 -2.3 -2.79 0.12 1.2 1.38 1.34 -2.7 -2.09 -1.29 -1.59
-2.65 1.21 -0.55 -0.46 -1.54 1.77 -1.75 -3.29 2.07 -1.88 -1.16 -3.68 -1.92 0.3 0.22 -1.73
-1.52 -2.58 1.35 1.42 0.9 1.59 -0.97 -0.2 -1.52 -1.28 0.52 -0.25 -3.26 -2.03 -2.02 -1.42
-1.29 1.66 -2.22 -3.24 -4.3 -5.19 0.69 0.91 2.3 1.44 -2.75 -3.17 -2.51 -1.93 -2.86 -3.96
- - - - - - - - - - - - - - - -
-4.25 -5.61 -0.78 -0.58 1.13 1.37 0.61 -1.32 -3.64 - 0.58 -0.45 -0.33 0.03 1.41 0.27
-2.02 -1.75 1.95 1.46 1.44 1.42 -1.88 -1.52 -3.23 -2.03 -0.69 -0.41 -2.39 -1.98 -1.2 -2.02
-5.62 -6.89 1.14 1.76 1.4 1.56 -0.5 -2.46 -1.5 -0.55 0.75 -0.16 -5.1 -4.27 -3.13 -3.74

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.