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Heatmap: Cluster_208 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.38 -0.98 -5.76 -4.84 -2.0 -2.42 -0.7 -0.89 -1.44 -1.49 -0.74 -1.12 1.36 1.7 1.38 1.52
0.36 0.35 -2.67 -1.93 -1.62 -1.07 0.62 -0.26 -1.16 -1.8 0.24 -0.06 0.6 0.71 0.69 1.14
0.06 -0.32 -1.05 -0.51 -0.6 -0.54 0.53 -0.22 0.23 -0.06 0.09 -0.42 0.36 0.35 0.12 0.79
-1.24 0.17 -2.8 -2.8 -2.29 -1.4 0.08 0.26 1.13 1.08 0.15 -0.7 0.75 0.31 -0.34 0.65
0.87 1.04 -1.37 -1.16 -1.09 -0.77 0.18 -0.2 0.87 0.65 0.56 0.32 -1.05 -0.96 -0.93 -0.8
1.26 -0.1 -2.14 -2.33 -1.86 -0.91 0.18 -0.57 -0.63 -0.54 0.21 0.22 0.7 0.83 0.17 0.54
0.36 -0.18 -0.56 -0.5 -0.11 -0.12 0.81 0.11 0.07 -0.49 0.25 0.67 -0.13 -0.59 -0.25 -0.3
-3.36 -4.12 1.55 1.32 2.28 1.42 -0.73 -1.8 -3.8 -3.79 -1.33 -1.0 -1.74 -1.6 -2.93 -2.33
-0.6 -1.41 -0.59 0.05 0.44 0.27 0.55 -1.03 0.32 0.89 1.29 1.06 -1.42 -1.98 -2.64 -1.67
1.15 0.6 -0.72 -1.35 -0.06 -0.27 -0.65 -0.78 -0.47 -0.22 -0.74 -1.51 0.72 0.44 0.36 0.52
-1.73 -1.17 -7.55 - - -6.0 -6.9 2.12 2.18 1.85 -7.87 -6.98 -0.01 -0.36 -1.96 -0.5
-0.35 0.29 -1.74 -2.04 -1.36 -1.21 -0.29 -0.23 2.01 1.84 -0.89 -0.99 -0.95 -1.04 -1.18 -0.23
-0.56 -0.04 -0.26 -0.16 -0.3 -0.6 -0.3 1.09 0.91 0.13 -0.78 -0.01 -0.49 -0.62 0.31 0.08
-2.45 -5.57 -1.77 -2.46 -0.87 -1.39 1.15 -0.61 -4.04 -4.98 -1.02 -0.77 1.71 1.52 0.29 1.58
-0.91 -1.22 -0.73 -0.42 -0.25 0.32 0.14 -0.31 -0.35 -0.18 1.26 1.33 -0.39 -0.36 -0.56 -0.17
0.36 -0.87 -1.71 -1.39 -2.21 -1.12 -0.01 0.56 0.58 -0.42 -1.4 -2.23 1.0 0.93 0.24 1.26
-1.4 -0.17 -2.48 -2.04 -1.32 -0.11 -0.03 0.55 1.59 0.41 -0.82 -0.15 0.42 0.47 0.13 -0.13
-1.9 -1.39 -1.7 -2.6 -0.47 -1.72 -0.11 -1.1 -0.42 0.05 -0.38 0.24 1.74 1.11 -0.07 1.19
0.92 1.4 -1.4 -0.92 -0.5 -0.62 0.04 -0.17 -0.04 0.56 -0.12 -0.15 -0.58 -0.57 -0.36 -0.14
0.14 1.11 -1.68 -2.35 -0.71 -0.1 0.46 -0.92 -0.11 -0.4 -0.43 -1.34 -0.11 0.47 0.58 1.12
-2.86 -1.56 -0.35 -0.31 0.77 0.8 0.29 0.46 -7.04 -4.98 2.03 1.86 -3.69 -6.78 - -4.81
-1.54 1.19 -0.69 -0.29 -0.81 -1.13 -1.3 -0.7 -0.21 -2.52 1.67 1.62 -0.53 -0.66 -0.55 -0.77
-1.65 -3.73 - - - - - 0.57 -2.56 - - - 2.9 0.63 - 2.31
0.77 1.04 -0.91 -2.16 -1.08 -0.77 -0.7 -0.22 0.66 0.91 0.02 -0.22 -0.53 -0.27 -0.39 0.41
-0.86 -0.8 0.98 1.03 1.49 -0.83 0.16 -0.84 0.32 -0.11 0.09 0.47 -1.96 -1.65 -1.73 -1.71
-3.57 -3.77 -9.22 -10.06 -9.86 -10.03 -4.84 2.15 2.54 2.43 -7.31 -6.5 -4.46 -4.57 -5.43 -5.0
1.77 0.2 -1.96 -1.77 -1.75 -0.93 0.07 -0.25 0.22 -0.54 -0.26 -0.7 0.12 0.56 -0.3 0.59
-0.96 -1.05 0.8 0.45 1.58 0.29 0.21 -1.82 -1.84 -1.39 0.05 0.55 -0.39 -0.48 -0.99 0.13
-2.14 1.33 -1.86 -2.01 -1.26 0.03 1.05 1.39 1.44 0.29 -1.09 -0.16 -1.48 -1.75 -2.0 -1.29
-0.99 -8.3 -5.37 -5.23 -4.84 -3.76 -0.88 0.7 -5.63 -4.93 0.55 -0.42 1.49 1.8 0.56 1.65
0.22 -2.66 -1.6 -0.49 -0.58 -0.53 -0.03 -0.56 - - -2.73 - 2.21 0.99 0.8 1.08
- - - - - - - - - - - - 2.52 2.29 1.03 1.74
-1.56 -2.17 0.15 0.39 0.69 0.46 0.17 -0.69 -1.59 -1.76 0.45 -0.05 0.69 0.59 -0.14 0.38
-7.21 -6.15 -0.73 -0.55 1.16 2.18 -0.26 1.5 -4.87 -6.81 1.6 0.11 -5.52 -7.62 -5.54 -4.32
- - -1.21 - - - - - - - - - 3.01 1.92 - 1.89
-2.5 -7.15 -2.67 -2.34 -0.4 -1.51 -1.55 -0.82 - -7.63 -4.14 -2.4 1.82 2.1 1.47 1.37
-2.05 -2.72 1.91 2.19 1.19 1.4 -2.01 -1.61 -2.26 -1.77 -1.06 -1.36 -3.24 -3.58 -2.97 -3.21
-1.04 -1.95 -2.11 -1.94 -1.16 -1.63 -0.53 -1.38 0.26 0.65 0.98 1.06 0.9 0.53 0.36 0.57
0.29 1.73 - - - - -4.86 0.3 1.99 1.3 - -4.63 0.05 -0.12 -0.3 -0.08
-8.3 2.29 -6.08 -9.21 0.39 0.46 1.07 0.66 - - - - 0.44 0.33 -0.17 0.27
- -5.42 0.62 2.35 1.13 1.97 -4.56 -8.12 -3.9 - -2.81 -2.33 -0.1 -0.7 -1.0 -0.43
-2.72 -3.41 1.62 1.62 1.95 1.6 -1.42 -2.42 -1.4 -1.62 -0.52 -1.83 -2.53 -3.56 -4.05 -2.73
-0.76 -0.92 -1.34 -0.84 -0.44 0.2 0.69 -0.07 0.95 0.25 0.15 0.35 -0.09 -0.05 -0.2 0.25
0.27 -2.06 0.3 0.98 -0.39 -0.8 1.06 0.42 -1.38 -1.77 -0.23 -1.23 -0.34 0.03 0.15 0.78
-0.42 -1.15 1.25 1.35 0.56 0.34 0.48 -1.33 -0.12 -0.37 -0.64 0.57 -1.52 -1.54 -1.38 -1.21
-4.38 -5.83 2.25 1.96 1.74 1.6 -5.56 -3.96 -4.73 -5.42 -1.85 -2.03 -3.97 -4.26 -3.78 -3.43
0.96 0.04 -1.26 -1.16 -0.35 -0.07 -0.01 -1.65 -0.93 -0.4 0.31 0.29 0.35 0.61 0.27 0.46
-0.99 -0.63 -0.16 -0.34 0.22 -0.4 0.99 -0.42 0.77 1.18 0.41 0.3 -1.02 -0.99 -1.15 -0.9
-0.49 -0.98 0.11 0.45 -0.08 0.43 0.77 0.11 -1.02 -1.91 0.8 0.64 -0.42 -0.47 -0.34 -0.06
- - - - - - - - - - - - 3.33 1.47 - 1.67
-1.75 0.1 0.43 0.96 2.07 0.53 1.56 -2.64 -2.18 -3.21 0.08 0.09 -4.5 -5.78 -5.17 -3.81
0.16 0.02 -1.1 -1.26 -0.77 -0.79 0.29 -0.43 -0.2 0.18 0.53 0.66 0.19 0.23 0.22 0.41
0.46 -0.09 -0.48 -0.68 -0.33 0.14 0.18 -0.9 -0.97 -0.53 0.15 0.42 0.2 0.39 0.26 0.56
- - -1.43 -1.17 -1.39 -2.01 3.71 -3.23 -0.79 -2.67 -1.92 -1.53 -7.69 -6.78 - -6.22
0.5 -1.67 0.44 -0.1 0.21 0.86 0.02 -1.5 -1.61 -1.12 0.4 0.27 0.27 -0.01 0.04 0.16
0.67 0.92 -0.73 -0.69 -0.07 0.08 0.69 0.23 0.15 -0.19 0.48 0.51 -1.26 -1.21 -1.09 -1.4
0.16 -0.25 -1.63 -1.31 -1.37 -1.33 0.5 1.15 0.44 0.33 -0.12 -1.54 0.58 0.63 -0.62 0.4
-1.95 -3.56 -3.33 -3.09 -0.46 -2.16 -0.49 1.76 0.89 1.37 1.43 0.84 -1.57 -2.07 -2.08 -0.57
0.01 -0.33 1.42 1.15 1.96 0.45 -0.44 -2.39 -3.72 -4.6 -1.09 -1.36 -0.71 -0.69 -1.48 -0.8
-0.37 -1.17 0.22 0.03 -0.91 -1.66 0.47 0.3 -3.32 -2.77 -0.46 0.02 1.06 0.34 -0.15 1.53
-0.59 -1.19 -2.45 -2.25 -1.24 -1.36 0.14 -0.27 1.62 2.26 0.38 0.2 -1.43 -1.52 -1.68 -1.25
-1.29 -2.74 -0.22 -0.78 -1.02 -0.76 0.85 -0.89 -0.77 -1.62 -0.68 0.6 1.01 1.29 0.36 0.84
-0.11 0.31 -2.48 -1.85 -1.23 -1.25 0.65 0.72 -0.5 -0.63 -0.64 -0.83 1.06 0.97 0.18 0.66
-0.38 -0.72 0.42 0.6 0.63 0.44 -0.35 -0.91 0.37 0.73 0.71 0.48 -1.4 -1.2 -1.68 -1.15
1.16 -0.25 -1.98 -2.51 -1.65 -1.63 0.64 0.19 0.7 0.89 0.29 -0.41 0.01 -0.12 -0.4 0.05
-0.84 1.04 -1.32 -0.37 -0.54 -0.6 1.47 0.27 0.52 0.38 0.53 0.23 -1.25 -1.46 -2.12 -0.89
-0.83 -1.84 -3.09 -3.57 -4.77 -2.62 -0.45 0.35 -4.75 -5.28 - -4.02 1.87 2.05 0.74 1.66
-2.91 -0.13 0.74 0.24 1.25 0.55 0.4 -0.31 -0.34 -0.75 0.25 0.56 -0.62 -0.44 -1.58 -1.48
-1.41 - -1.02 -1.29 -0.24 -1.05 -0.05 1.29 -7.49 - -4.81 -1.8 1.68 1.59 0.49 1.03
-0.87 -1.17 -0.04 0.21 0.75 0.82 1.22 -1.66 -0.31 -0.69 -0.48 -1.04 0.33 0.02 -0.63 0.31
0.19 -1.36 -0.89 -1.14 0.33 0.7 0.21 -1.2 -0.51 -0.99 0.61 -0.73 0.57 0.38 -0.46 1.11
0.1 0.09 -0.98 -1.55 -1.06 -0.74 -0.48 -0.57 0.22 -1.28 1.47 1.8 -0.5 -0.65 -0.93 -0.24
0.29 -0.05 -3.32 -2.95 -3.24 -4.31 -1.89 0.05 0.54 1.79 -2.02 - 1.14 0.27 - 1.83
-2.23 -0.67 -0.82 -0.44 0.49 1.31 0.19 -0.5 -0.68 -0.65 1.49 0.99 -1.08 -0.97 -1.17 -0.64
-1.03 -1.0 0.56 0.56 1.3 0.61 0.07 -1.67 -0.37 0.42 1.33 0.51 -2.46 -3.1 -2.84 -2.2
-1.08 0.36 -1.62 -1.27 -1.76 -1.96 -0.62 0.91 1.94 1.85 -1.09 -0.89 -1.05 -1.21 -1.2 -0.72

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.