Heatmap: Cluster_77 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	stage A1 (Dhaka et al., 2020)	stage A3 (Dhaka et al., 2020)	M-81E strain-control (Sun et al., 2020)	M-81E strain-salt (Sun et al., 2020)	Roma strain-control (Sun et al., 2020)	Roma strain-salt (Sun et al., 2020)	root (Murray et al., 2022)	shoot system (Murray et al., 2022)	119 days old-Postflowering drought stress (Varoquaux et al., 2019)	84 days old-control (Varoquaux et al., 2019)	84 days old-Preflowering drought stress (Varoquaux et al., 2019)	35 days old-control (Varoquaux et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)
Sobic.001G021601.1	-	-	-	-0.51	-	-	0.02	3.37	-	-	-	-	-	-	1.99	-
Sobic.001G183900.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.001G232600.1	3.46	-	-	-	-	-	-	-	-	-	-	-	-	-	2.32	-
Sobic.001G269800.1	-	3.33	-	-	-	-	-	-	-	-	-0.78	-	-	-	2.43	-
Sobic.001G312200.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.001G330300.1	-4.4	-	1.74	1.11	1.21	2.86	-1.22	-9.37	-	-	-3.86	-1.41	-	-	-5.82	-
Sobic.001G379800.1	-	-	-	0.89	1.69	-	-	-	-	-	-	-	-	-	3.45	-
Sobic.001G396700.1	-	-	0.55	-0.11	-0.32	2.42	2.05	-4.11	-	-	-	-0.88	-	-	1.44	-
Sobic.001G495132.1	-	-	0.0	-0.87	-0.63	0.92	-	-	-3.61	-2.23	2.66	2.34	-	-	-2.33	-
Sobic.001G520600.1	-	3.19	-	-	-	-	-	-1.38	-	-	-	-	0.4	-	2.37	-
Sobic.001G531600.2	-	0.48	-0.56	-	-	-	-1.23	-	2.34	0.08	-	-	-	-	2.33	1.23
Sobic.002G001900.1	-	-7.36	-6.79	-	-	-	-2.88	-1.81	0.73	3.75	-4.54	-1.77	-	-	-2.91	-
Sobic.002G125400.2	-	0.98	-	-	-	-	-	-	1.48	-	0.6	-	-	0.9	2.97	-
Sobic.002G171200.3	-	3.52	-	-4.1	-	-	-3.51	0.59	0.1	-0.45	-1.18	-1.87	-	-	-1.54	-
Sobic.002G191600.1	-	0.13	-	-	-	-	-	-	-	-	-	-	-	-	3.9	-
Sobic.002G215932.1	-	0.55	-	-	-	2.08	1.44	-	-	-	1.19	-	-	-	2.41	-
Sobic.002G391400.1	-6.42	-8.28	0.99	1.55	2.94	1.38	-0.6	-8.65	-	-	-5.64	-3.8	-	-	-6.43	-
Sobic.003G027700.2	-1.49	1.35	-0.26	-	-0.55	-	-	1.2	-0.11	-	-0.01	1.47	-	-	2.2	-
Sobic.003G084501.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.003G112400.1	-	-	1.36	1.3	3.24	0.48	-2.65	-	-	-	-	-	-	-	-	-
Sobic.003G149000.1	-4.84	-1.61	-1.92	-0.39	1.1	-0.25	2.71	1.82	-2.02	-1.59	-0.88	-1.24	-	-	-5.3	-
Sobic.003G154450.1	-	-	-	-	-	2.53	-	2.5	-	2.19	-	-	-	-	-	-
Sobic.003G170366.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.003G206200.1	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-10.87	-
Sobic.003G211600.2	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.003G239400.2	-3.68	3.95	-	-	-	-	-	-2.58	-	-	-	-	-	-	-1.56	-
Sobic.003G257650.1	-	-	-	-	-	-	2.26	1.27	-	-	-	-	-	-0.1	2.97	-
Sobic.003G283700.2	-	0.89	-	-	-	2.92	-	-	1.31	-	-	-	-	-	2.03	-
Sobic.004G008300.1	-	-	-1.76	-2.43	0.82	-	-0.27	-4.41	-1.17	-	2.31	2.67	-	-	0.12	-
Sobic.004G111500.1	-1.54	-1.29	-	-	-	1.53	-	-	-	-	2.37	0.81	-	0.06	2.13	-
Sobic.004G114200.1	-	-	-	-1.28	2.33	2.61	-1.28	-	-1.03	0.61	0.65	-1.04	-	-	-	-
Sobic.004G135800.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.004G159866.1	3.34	2.42	-	-	-	-	-	-	-	-	-	-	-	-	-0.98	-
Sobic.004G318800.1	-	-	-	2.21	-	-	-	-	-	-	-	0.46	-	1.69	2.76	-
Sobic.005G035400.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.005G046001.1	-	-0.52	-	-	-	-	-	-	-	-	-	-	-	-	3.94	-
Sobic.005G052100.1	2.43	1.5	-	-	-	-	-	-	-	-	-	-	-	-	2.96	-
Sobic.005G088400.1	-	-	-1.71	0.03	2.98	0.37	0.62	-1.7	-	-	-1.05	-0.15	-	-	1.17	-
Sobic.005G090500.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.005G156400.1	-	-4.98	-	-	-	-	-	-	2.93	3.01	-2.21	-5.89	-	-	-3.56	-
Sobic.005G198600.1	-0.45	3.38	-	-	-	-	-	-2.73	-	-	-	-	-	-	2.23	-
Sobic.006G020700.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.006G077100.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.006G170500.2	-4.37	3.39	-0.4	-0.01	0.11	-0.61	0.55	-6.77	-	-	-3.41	-	-	-	-1.22	-
Sobic.006G175500.3	-0.76	-3.77	-	-	-5.44	-2.81	-1.66	2.38	-	-	3.0	0.59	-	-	-2.69	-
Sobic.006G250600.1	-	-	1.77	-	-	-	-	-	-	-	-	-	-	-	3.65	-
Sobic.007G058400.1	-	-	-1.58	-2.24	1.03	0.25	3.43	-4.44	-	-	-1.59	0.01	-	-	-4.39	-
Sobic.007G086300.1	-	-	1.38	1.3	1.33	2.11	1.8	-6.06	-	-	-3.16	-1.09	-	-	-5.04	-
Sobic.007G183000.1	-	-	1.84	-	-	-	-	-0.26	-	1.5	-	-	-	-	3.13	-
Sobic.007G214400.1	-4.87	-	2.13	1.99	1.93	0.44	-	-10.09	-6.77	-	-2.98	1.14	-	-6.59	-3.24	-
Sobic.008G053750.1	-	-	-	0.99	-	-	-	-	-	1.32	-	-	-	-	3.53	-
Sobic.008G078800.1	-	-	1.08	1.47	1.41	1.02	2.27	-6.11	-	-	-1.8	-0.24	-	-	-1.16	-
Sobic.008G102900.1	-	-	3.63	-	-	-	1.87	-	-	-	-	-	-	-	-	-
Sobic.008G104701.1	-	-	1.6	-0.39	1.0	-	-	2.21	-	-	-	-	-	0.09	2.17	-
Sobic.008G120600.1	-	0.89	-	-	-	-	-	-	-	-	-	-	-	-	3.82	-
Sobic.008G170900.1	-	-	-	-	2.34	-	-	1.25	-	-	-	-	-	-	3.1	-
Sobic.008G182800.1	-	-10.31	-2.07	-2.04	-4.7	-6.67	-5.44	-0.64	-0.85	-0.87	2.02	3.27	-9.51	-10.6	-8.53	-
Sobic.009G021400.1	-5.16	-	2.51	1.38	-0.81	0.92	1.36	-2.42	-	-	-2.54	0.94	-	-	-1.37	-
Sobic.009G059200.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.009G082050.1	-	1.24	-	-	1.45	2.11	-	-	-0.06	-	0.03	-	-	-	2.21	-
Sobic.009G196700.1	-	-	-	-	-	-	-	3.49	-0.34	-	-	-	-	-	1.98	-
Sobic.009G231000.1	-	-	0.98	1.83	-1.05	-2.48	2.77	-	-	-	-	1.23	-	-	-0.61	-
Sobic.009G234100.1	-6.55	-4.6	2.01	2.39	1.73	1.19	-5.44	-4.99	-3.11	-2.49	-1.78	-1.35	-	-	-4.88	-5.98
Sobic.010G043500.1	-	-0.72	-0.87	2.81	1.23	2.45	-	-	-	-	-	-	-	-	-	-
Sobic.010G056500.1	-7.28	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-5.44	-
Sobic.010G203800.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.0	-
Sobic.010G206100.1	-	-	-	1.66	1.42	2.04	-	-	-	-	-	-	-	-	2.6	-
Sobic.K044505.1	-	0.94	-	-	-	-	-	-	-	-	1.36	-	-	-	3.52	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.