1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_243 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.87 -6.18 0.85 1.27 0.47 1.24 -2.46 -3.8 -0.92 0.22 1.59 1.5 -7.21 -6.57 -3.73 -6.11
-5.25 -6.13 -0.37 0.89 1.35 0.34 0.75 -3.88 2.04 1.45 -5.71 -1.49 -4.03 -2.81 -1.6 -
-6.9 - 1.47 1.72 1.66 1.11 -2.86 -1.18 -2.18 -0.75 0.96 0.19 - -3.65 -4.04 -
-2.73 - -0.92 0.0 -2.79 0.63 -3.59 - - - 3.31 0.23 - -1.1 -0.03 -
-4.42 -6.56 2.11 1.84 1.34 2.01 -4.46 -4.68 -6.28 -4.14 -0.95 -0.65 -6.37 -8.47 -2.84 -7.5
-5.6 -3.49 1.22 1.43 -0.69 0.78 0.62 -1.36 -1.08 -0.73 1.99 0.45 -3.66 -4.76 - -3.78
- - -1.88 -0.23 2.0 0.41 2.73 -5.55 - - - -2.31 - -0.48 1.0 -
- - - - - - - - - - - - - - - -
-5.66 -3.77 0.48 0.41 -2.06 2.68 -7.19 -4.32 2.36 -1.16 -1.34 -1.31 - -8.03 -3.64 -
-0.55 -0.89 -5.05 -3.72 -3.99 -4.09 -4.58 -11.02 -7.81 -7.75 -7.71 -6.23 1.11 1.77 2.95 0.27
-0.23 -2.8 -0.36 -0.66 1.12 1.05 -1.9 -1.43 - - - -1.67 - 1.78 2.31 -
- -3.02 0.13 1.97 -0.74 1.1 0.46 0.62 - - - - 0.46 0.95 - 0.92
-3.15 - 2.78 2.35 -1.85 -1.41 0.08 -3.2 -2.34 -2.28 -3.83 -3.93 -2.67 -2.93 0.27 -4.28
-2.88 -3.45 0.86 1.82 1.26 1.04 0.7 -2.92 -2.51 -2.75 1.1 0.81 - -7.25 - -
- - 0.2 0.36 2.64 0.6 -0.47 1.05 -4.04 -0.66 -2.36 -0.35 - -2.79 -0.14 -1.82
- -5.16 -0.66 -0.38 -0.53 -1.0 -0.63 3.4 0.32 -0.34 - -3.53 - -4.84 - -
2.54 - 0.35 1.06 0.87 1.98 -0.53 -6.52 -6.75 - -4.33 -3.3 - -5.51 -2.44 -
- -2.27 1.29 0.78 1.95 2.53 0.21 -8.18 - - -4.86 -2.96 - - -0.64 -
-3.14 0.28 1.16 1.35 1.71 0.87 -0.09 1.12 -1.61 -1.85 -1.14 -0.73 - -9.51 -7.44 -6.95
0.71 -0.91 1.04 -0.63 0.76 0.33 -2.63 -2.29 0.95 -0.32 -1.24 -1.36 - -1.15 1.93 -
-3.36 - 2.79 1.3 1.69 0.95 -0.9 -0.76 - -3.88 -4.52 -3.62 - -8.26 -4.19 -
-6.3 -2.89 -0.24 0.93 0.79 1.97 -0.71 -3.04 -1.04 -0.34 1.79 0.92 - -7.92 -3.68 -
-4.87 - 0.76 1.8 1.5 1.21 -0.23 -3.64 -2.9 -1.82 0.98 1.17 -6.92 -5.69 -4.36 -
1.23 -3.18 - - -4.81 - - -2.6 - - - - -0.22 1.05 3.27 -0.34
-4.11 -3.71 0.07 1.41 1.33 0.34 2.23 -3.09 -1.65 -1.38 0.35 0.2 -3.56 -2.07 -3.59 -4.69
2.95 -1.52 -0.78 -0.72 0.21 -1.47 0.78 -3.37 -1.48 1.55 -5.28 -5.38 - -6.91 -4.84 -
- - -1.43 0.5 -1.31 - 3.65 -0.8 - - - - - -0.62 - -
-8.59 - 1.96 1.9 2.24 1.42 -1.28 -2.44 -5.66 -5.6 -2.76 -2.38 - -7.0 - -
-1.73 -1.58 1.9 1.84 1.64 1.02 -1.08 -0.28 -1.78 -4.07 -0.21 -1.91 -5.79 -3.71 -5.81 -6.91
- -8.87 1.56 1.28 -0.37 -0.33 -0.3 0.21 -0.41 0.96 1.22 1.0 - -5.17 -5.42 -
3.01 2.42 -8.51 -6.85 -7.57 -3.8 -6.35 -1.86 -1.41 -7.55 -6.67 -7.14 -1.87 -0.05 -0.96 -3.76
-1.27 - -2.06 -0.14 - 0.71 0.44 0.37 - -1.43 - - -0.15 1.93 0.83 1.73
-2.7 3.96 -2.8 - - - -3.48 - - - - - - - - -
- -2.15 0.65 1.77 0.17 -0.39 - -1.59 0.28 0.69 - - - -0.07 1.02 1.47
-2.57 -2.76 0.09 -1.09 2.32 2.5 -1.95 -2.23 -5.76 -4.7 -2.5 -2.6 -1.41 -0.08 -0.85 -0.37
- - 2.45 2.24 1.93 -0.05 - - - - - -1.74 -0.46 - - -
-2.26 -5.12 -3.99 -5.25 -3.21 -2.72 -1.16 -1.11 -6.27 -6.53 -2.35 -2.2 1.58 1.93 2.43 0.92
-8.42 -5.35 -2.53 -2.08 0.15 0.55 1.57 1.24 -5.1 -3.87 1.73 2.05 - - -3.18 -
3.51 0.96 -5.41 - -5.28 -3.86 -4.5 -4.74 -0.32 -0.61 -1.94 -3.85 -3.5 - -0.94 -3.62
- -4.26 -1.3 -1.03 0.21 0.82 -5.54 0.67 3.19 -1.09 -1.81 -0.69 - -7.75 -5.09 -
-5.69 -5.11 -0.29 -0.22 -3.49 -3.61 -1.83 1.26 1.15 1.22 1.7 1.37 -2.22 -1.77 -1.06 -4.19
- -3.59 0.27 1.33 1.84 2.34 -0.28 -3.34 -4.5 - -0.56 0.83 - -4.83 -3.76 -4.86
-4.36 -6.16 0.8 1.37 0.55 0.33 -0.32 -0.13 1.12 0.94 0.65 0.56 -5.67 -6.76 -5.43 -
0.27 1.04 -3.13 -3.99 -0.59 -0.41 0.58 -0.34 -0.75 -0.74 -0.58 -0.69 0.11 0.79 1.4 -0.11
3.78 -2.05 -4.95 -3.39 - -3.4 -5.2 -3.04 -5.96 -5.9 - -5.97 -1.62 -0.63 -0.84 -4.74
- - - 1.07 - - - 1.39 1.33 - - - - 3.13 - -
-6.92 -4.3 1.93 1.64 1.72 0.8 0.28 -4.7 -1.97 -1.66 0.21 -0.05 - -11.0 -6.93 -10.03
-0.94 -0.72 - - - - - - - - - - - - 3.89 -
- - - 1.08 - - - 3.8 - - - - - - - -
-7.04 -4.47 1.52 1.12 1.37 1.5 -1.94 -0.82 0.53 -0.25 -0.36 0.42 -4.35 -2.86 - -3.47
- - 0.74 1.08 - 3.52 - -0.35 - - - - - - - -
- - -0.82 -0.17 -0.4 -1.22 3.44 -0.76 - - -2.23 0.33 - -2.71 -1.64 -
-7.72 -6.31 -0.31 -1.99 -0.25 -0.53 -2.99 -3.16 - -8.3 -0.01 -1.67 0.96 1.94 2.41 -0.44
- - -0.53 - 3.03 1.94 - - -2.56 -2.49 -1.46 - - -1.08 0.78 -1.32
-5.21 -0.39 -1.21 -1.3 1.19 2.26 1.24 0.84 -5.29 -5.82 0.69 0.36 -4.52 -4.3 -3.55 -4.65
-7.79 - -2.69 -3.87 -3.42 -1.27 -5.68 -5.22 0.63 0.05 2.55 2.52 -2.51 -4.19 -0.31 -
-6.16 -6.18 2.4 2.7 -1.2 0.37 -2.43 -3.23 0.0 -0.85 -2.31 -1.69 - -4.53 -3.46 -
2.64 -8.46 -2.41 -1.61 -1.4 -2.15 2.46 -1.52 -1.79 -1.82 0.3 -0.11 - - -5.07 -6.17
- - - - - - - -0.05 - - - - - - 3.91 -
- -5.83 1.51 1.66 1.1 0.2 1.46 -6.38 - - 0.4 1.31 -5.73 -6.83 -3.76 -
-0.24 1.46 - - - -0.45 -2.09 -0.76 - - - - - - 3.05 1.36
0.18 -1.21 - - - - 0.96 - - 0.34 - - 1.47 - 3.08 -
-7.05 0.04 0.57 0.74 2.31 1.51 0.32 -0.68 -0.57 -1.3 -0.76 -1.26 -8.54 -7.63 -5.56 -
-3.63 -4.28 1.26 1.53 2.15 2.0 0.65 -3.47 - - -3.05 -1.51 - -7.45 -6.7 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.