Heatmap: Cluster_197 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-5.99 -5.7 0.28 0.62 1.18 2.49 -4.3 -6.15 -1.73 -0.54 0.86 1.05 -7.83 -5.47 -1.47 -6.96
-0.99 - - 0.26 - - - -1.19 - - - - - - 3.79 -
- 3.1 - - - - - - - - - - - - 2.9 -
- -1.51 1.16 2.59 -0.22 0.93 - -6.12 - - - - - -1.43 2.08 -
-7.76 - -0.3 -0.49 2.73 -1.3 - -5.89 -4.17 -4.11 -3.54 -0.02 -4.43 -6.11 2.58 -2.44
-6.12 -7.56 0.81 1.53 2.52 1.52 -4.33 -5.57 -4.65 -6.52 0.0 0.27 -8.56 -9.65 -1.33 -6.46
-3.17 -2.7 0.69 0.8 1.51 2.5 -2.54 -5.42 -2.96 -2.6 0.54 0.66 -6.14 -7.82 -1.75 -4.26
-6.51 -4.21 0.84 0.61 1.35 2.19 -5.63 -7.31 -3.96 -3.59 0.96 0.97 -6.05 -8.14 0.39 -3.09
-0.89 2.39 -1.12 -1.0 -0.71 0.44 -2.57 -1.58 -1.27 -2.65 -0.8 0.5 -2.05 -1.27 1.38 -0.03
-4.67 2.44 0.23 0.37 1.11 0.65 -0.14 -3.65 -5.42 -3.04 -2.74 -4.43 -5.09 -3.19 1.52 -5.22
-6.22 -2.27 2.77 1.42 2.13 0.65 -5.24 -5.23 -4.43 -4.4 -5.85 -4.36 -6.49 -6.56 -3.57 -7.2
-0.38 0.11 2.73 -0.42 2.04 -2.85 -1.19 -1.88 - - -4.54 -1.14 - -7.28 0.37 -
-2.04 -0.9 -0.33 -0.04 -0.92 1.25 2.82 -1.4 -6.61 - -1.12 0.08 -4.24 -5.3 0.52 -4.33
3.95 -1.65 - - -5.3 - -7.32 - - - - - -7.33 -5.25 -3.03 -
-2.87 - - - -0.31 -1.05 2.59 1.4 - - - 0.88 - -1.21 1.86 -
- - -0.03 1.02 3.31 1.52 -2.98 -9.61 -6.47 -10.5 -5.82 -5.08 - -10.31 -4.33 -
- - 0.68 0.02 - 0.65 - - - - - - - - 3.56 -
-1.95 -4.08 -0.02 -0.74 3.14 -1.02 -4.53 -6.48 -5.74 -6.2 -2.92 -1.52 -3.17 -3.57 1.96 -2.75
-1.19 - -2.75 -4.0 -0.4 0.22 - -2.36 - - -2.65 -1.43 -0.84 0.06 3.4 -0.97
-6.0 - 1.63 1.74 2.59 0.46 0.28 -7.85 - - -2.71 -1.04 - - -1.72 -
-4.53 1.69 -0.85 0.04 0.44 1.56 1.64 -1.35 -1.15 0.14 -1.06 -0.28 -5.08 -4.8 -1.47 -4.72
-5.31 -6.39 2.52 0.97 1.03 0.49 -0.61 -5.51 -6.67 -6.61 -1.04 -0.43 -3.75 -2.89 1.32 -2.4
-5.17 -4.36 0.22 0.36 2.29 -0.3 -1.34 -2.65 -4.43 -4.64 -0.99 0.24 -0.32 -0.34 1.77 -1.15
-1.88 -3.75 0.5 1.35 -0.14 3.08 -3.15 -4.32 -3.81 -3.01 -0.49 -0.32 -5.09 -4.19 -1.53 -4.22
-3.94 -4.68 1.53 1.2 1.33 2.15 -4.7 -5.17 -4.15 -2.41 0.63 0.9 - - -4.4 -
- - - - - - - - - - - - - - 4.0 -
- - 1.26 - 1.37 1.38 - -2.18 - - - -1.45 - - 2.81 -0.29
- - - - -0.04 - - 0.81 - - - - - - 3.73 -
-6.46 -3.61 0.64 1.06 2.53 -1.48 -4.19 -2.38 -1.51 -0.87 1.06 0.96 -3.36 -4.24 -0.49 -3.54
- - 0.5 2.05 0.81 2.38 0.17 - - - - -0.05 - - 0.48 -
-2.22 -0.62 -0.16 -0.78 2.1 2.09 -1.6 -4.12 -7.5 -5.85 0.05 0.21 -2.68 -3.07 0.92 -1.56
-9.41 -10.76 1.12 1.05 3.25 0.17 -2.33 -5.31 -7.99 -6.19 -3.0 -0.76 -7.25 -7.35 -2.82 -5.37
0.63 -3.82 -4.54 -4.29 -2.66 -2.79 -2.48 0.95 2.45 2.22 -0.32 -0.64 - -4.08 -2.28 -5.85
- - 0.99 0.89 1.28 2.15 -0.77 -7.31 -1.02 1.25 -0.02 -0.86 - - -1.74 -
-3.3 -6.51 1.36 1.35 0.91 2.47 0.66 -1.05 -2.92 -2.55 -1.29 -1.52 - - -2.1 -
-4.41 -7.08 1.77 2.15 1.73 1.55 -3.63 -5.92 -2.44 -5.11 -0.75 -0.15 - -8.61 -3.74 -
- - - - - - - - - - - - - 1.62 3.69 -
- 3.98 -5.86 -7.11 - -5.16 - - - - - - - - -2.56 -
-5.13 - 1.68 0.9 2.17 2.19 -3.68 -5.74 - - -0.42 -1.02 - - -1.08 -
-6.27 -11.13 1.86 1.46 1.47 2.61 -5.29 -5.71 - -7.49 -2.08 -1.86 -8.57 - -2.9 -6.37
- - - - - - - - - - - - - - 4.0 -
-4.53 -6.84 1.01 1.59 0.54 2.54 -1.05 -4.01 -4.95 -3.7 -0.55 -0.55 -3.33 -3.76 0.49 -3.69
-3.01 - 0.67 0.05 1.98 2.46 -2.68 -4.89 - -2.89 -1.26 -1.95 - -2.78 1.41 -
-2.33 -2.36 2.31 1.46 1.98 1.23 -3.35 -5.25 -4.28 -6.22 -2.19 -0.31 - -5.04 -1.38 -
-3.82 2.16 -0.91 -2.04 -0.45 -0.08 -0.06 -1.69 - - -1.39 -2.01 -1.45 -1.09 2.61 -2.58
-3.02 -3.87 1.59 1.32 0.92 1.36 -4.01 -3.07 -2.87 -1.09 1.19 1.29 -5.66 -5.95 -1.93 -4.7
-1.45 -2.74 1.13 0.62 1.89 0.76 -0.97 -0.72 -0.13 -0.86 0.16 0.44 -4.88 -4.08 0.1 -2.76
-0.62 2.68 -1.32 -2.63 -1.8 -3.3 -0.12 -3.36 -3.58 -2.52 -2.2 -3.81 -3.47 -1.11 2.55 -5.18
-4.28 -4.39 1.05 1.73 1.62 1.22 0.18 -8.32 -0.53 -6.05 -2.21 -2.42 -2.76 -2.4 1.21 -2.3
- - - - 0.74 -1.75 -1.38 -3.36 - - - - - - 3.76 -
- - - -0.96 - -1.33 - -2.4 - - - - - - 3.9 -
- -5.34 0.42 -0.35 2.52 -1.73 -5.04 -6.51 -3.62 -3.72 -0.64 -0.27 -1.04 -2.2 2.4 -2.75
-7.24 - -0.07 -0.46 0.92 1.19 -1.41 -4.79 -3.75 - -2.07 -1.37 -3.45 -2.54 3.13 -4.57
-6.49 -9.28 2.18 2.49 1.8 0.77 -3.78 -6.89 -6.5 -8.15 -1.71 -2.23 - -11.43 -4.61 -10.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.